Wall clock time and date at job start Mon Mar 30 2020 01:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 O 1.42903 * 112.94577 * 50.33394 * 9 7 2 11 11 C 1.53954 * 113.74388 * 278.74046 * 9 7 2 12 12 N 1.47807 * 86.03668 * 222.08525 * 11 9 7 13 13 C 1.34774 * 134.45633 * 204.64086 * 12 11 9 14 14 O 1.21278 * 120.00353 * 179.86801 * 13 12 11 15 15 C 1.50700 * 119.99993 * 359.87247 * 13 12 11 16 16 H 1.08999 * 109.47357 * 14.99360 * 15 13 12 17 17 F 1.39902 * 109.46807 * 254.99807 * 15 13 12 18 18 C 1.53003 * 109.47495 * 134.99538 * 15 13 12 19 19 F 1.39907 * 109.46597 * 60.00107 * 18 15 13 20 20 F 1.39897 * 109.47445 * 179.97438 * 18 15 13 21 21 F 1.39895 * 109.47144 * 300.00469 * 18 15 13 22 22 C 1.47586 * 91.05425 * 24.54926 * 12 11 9 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 0.96700 * 113.99800 * 309.66654 * 10 9 7 25 25 H 1.08995 * 113.76496 * 336.35212 * 11 9 7 26 26 H 1.09005 * 113.76577 * 107.74446 * 11 9 7 27 27 H 1.08993 * 113.76952 * 221.15022 * 22 12 11 28 28 H 1.08995 * 113.86700 * 89.76371 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 8 0.2446 -2.5614 -1.0132 11 6 0.7562 -2.9292 1.3924 12 7 1.1919 -4.2900 1.0142 13 6 0.8427 -5.5338 1.3981 14 8 1.3847 -6.4972 0.8990 15 6 -0.2214 -5.7276 2.4475 16 1 -0.7717 -4.7966 2.5832 17 9 0.3779 -6.0956 3.6568 18 6 -1.1848 -6.8287 1.9998 19 9 -0.4784 -8.0238 1.8256 20 9 -2.1723 -7.0090 2.9742 21 9 -1.7840 -6.4608 0.7904 22 6 2.1609 -3.7402 0.0462 23 1 -0.4850 0.8401 0.0004 24 1 -0.3474 -1.7969 -1.0267 25 1 1.3275 -2.4975 2.2141 26 1 -0.3215 -2.8326 1.5249 27 1 2.2027 -4.2899 -0.8940 28 1 3.1462 -3.5468 0.4700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323963840.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:38 Heat of formation + Delta-G solvation = -261.485175 kcal Electronic energy + Delta-G solvation = -21740.979551 eV Core-core repulsion = 17485.497737 eV Total energy + Delta-G solvation = -4255.481814 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.062 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.53307 -49.62729 -48.90400 -48.76649 -41.33775 -39.27075 -35.91448 -34.14163 -32.64494 -30.25318 -27.39513 -27.13044 -25.10155 -22.21632 -20.75372 -20.05103 -19.90236 -19.41825 -19.16876 -18.38670 -17.79130 -17.09598 -16.90351 -16.28021 -15.93049 -15.75622 -15.67313 -15.65558 -15.30315 -15.03188 -15.02428 -14.98072 -14.73620 -14.44494 -13.94975 -13.76137 -13.41013 -12.91739 -12.79425 -12.75047 -12.25963 -12.20977 -11.55478 -11.12918 -10.65148 -10.34108 -9.79719 -8.26671 -6.42765 0.76127 1.05486 1.50211 1.50588 1.55398 1.60109 2.14862 2.41395 2.51186 2.60553 2.87173 2.98745 3.24826 3.61681 3.68807 4.06984 4.31107 4.55133 4.64719 4.76621 4.85751 5.20691 5.73677 5.91418 6.45853 6.59887 6.63037 7.30549 7.44510 8.79341 Molecular weight = 271.06amu Principal moments of inertia in cm(-1) A = 0.035586 B = 0.005203 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.641273 B = 5380.691968 C = 5471.135885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.038 3.962 3 Si 0.964 3.036 4 H -0.285 1.285 5 H -0.268 1.268 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.220 3.780 10 O -0.584 6.584 11 C 0.081 3.919 12 N -0.615 5.615 13 C 0.502 3.498 14 O -0.557 6.557 15 C 0.051 3.949 16 H 0.176 0.824 17 F -0.156 7.156 18 C 0.451 3.549 19 F -0.169 7.169 20 F -0.160 7.160 21 F -0.169 7.169 22 C 0.114 3.886 23 H 0.276 0.724 24 H 0.390 0.610 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 -4.858 6.176 8.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.163 4.163 3 Si 0.790 3.210 4 H -0.210 1.210 5 H -0.193 1.193 6 H -0.203 1.203 7 C -0.594 4.594 8 H 0.092 0.908 9 C 0.179 3.821 10 O -0.396 6.396 11 C -0.041 4.041 12 N -0.347 5.347 13 C 0.287 3.713 14 O -0.436 6.436 15 C 0.010 3.990 16 H 0.193 0.807 17 F -0.136 7.136 18 C 0.395 3.605 19 F -0.150 7.150 20 F -0.141 7.141 21 F -0.150 7.150 22 C -0.007 4.007 23 H 0.086 0.914 24 H 0.244 0.756 25 H 0.125 0.875 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.330 -6.020 5.861 8.719 hybrid contribution -0.098 1.046 0.083 1.054 sum -2.428 -4.974 5.944 8.122 Atomic orbital electron populations 1.69432 1.06942 1.29051 1.49885 1.25659 0.95713 1.02305 0.92631 0.85502 0.78317 0.78367 0.78816 1.21030 1.19260 1.20286 1.21658 0.94246 0.90512 1.53024 0.90786 1.20063 0.85946 0.91714 0.84363 1.86068 1.47399 1.49786 1.56376 1.24543 1.01317 0.75888 1.02353 1.50318 1.39519 1.04505 1.40384 1.20043 0.84753 0.82873 0.83611 1.90759 1.56150 1.39778 1.56925 1.22680 0.93669 0.99976 0.82637 0.80700 1.92984 1.84802 1.92939 1.42865 1.20297 0.80912 0.83242 0.76007 1.93267 1.78212 1.48360 1.95170 1.93254 1.63095 1.95681 1.62056 1.93260 1.84491 1.91331 1.45926 1.23651 0.94126 0.91597 0.91300 0.91393 0.75606 0.87541 0.89809 0.91421 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -42.44 11.20 21.45 0.24 -42.20 15 2 C 0.04 1.74 5.40 84.66 0.46 2.20 15 3 Si 0.96 36.86 29.54 68.60 2.03 38.88 15 4 H -0.28 -10.84 7.11 99.48 0.71 -10.13 15 5 H -0.27 -9.94 7.11 99.48 0.71 -9.23 15 6 H -0.28 -10.74 7.11 99.48 0.71 -10.03 15 7 C -0.56 -25.36 8.61 25.60 0.22 -25.14 15 8 H 0.07 3.27 7.81 -2.91 -0.02 3.25 15 9 C 0.22 9.50 1.40 -10.88 -0.02 9.49 15 10 O -0.58 -27.75 13.49 -148.98 -2.01 -29.75 15 11 C 0.08 2.94 7.66 86.45 0.66 3.60 15 12 N -0.61 -23.00 3.61 -839.59 -3.03 -26.03 15 13 C 0.50 18.57 7.13 87.66 0.63 19.19 15 14 O -0.56 -24.11 16.33 -3.02 -0.05 -24.16 15 15 C 0.05 1.47 3.71 29.85 0.11 1.58 15 16 H 0.18 3.88 7.26 -2.39 -0.02 3.86 15 17 F -0.16 -4.45 17.03 44.97 0.77 -3.69 15 18 C 0.45 13.12 2.86 71.98 0.21 13.33 15 19 F -0.17 -5.57 15.95 44.97 0.72 -4.86 15 20 F -0.16 -4.04 17.30 44.97 0.78 -3.26 15 21 F -0.17 -5.23 17.02 44.97 0.77 -4.46 15 22 C 0.11 4.48 8.23 86.49 0.71 5.19 15 23 H 0.28 12.31 8.31 -92.71 -0.77 11.54 15 24 H 0.39 18.74 6.60 -74.06 -0.49 18.26 15 25 H 0.11 3.60 8.09 -2.39 -0.02 3.58 15 26 H 0.08 2.90 7.84 -2.38 -0.02 2.88 15 27 H 0.07 2.75 8.14 -2.39 -0.02 2.73 15 28 H 0.11 3.94 8.09 -2.39 -0.02 3.92 15 Total: -1.00 -53.39 269.93 3.92 -49.47 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.74 Total: 20.62 kcal Atomic # 6 Polarization: 26.46 SS G_CDS: 2.98 Total: 29.44 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: -2.79 Total: -68.22 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -2.06 Total: -53.92 kcal Atomic # 9 Polarization: -19.29 SS G_CDS: 3.03 Total: -16.27 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.88 kcal Total: -53.39 3.92 -49.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323963840.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -212.020 kcal (2) G-P(sol) polarization free energy of solvation -53.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -261.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds