Wall clock time and date at job start Mon Mar 30 2020 01:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86797 * 119.99703 * 2 1 4 4 H 1.48501 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47244 * 299.99994 * 3 2 1 6 6 H 1.48497 * 109.47213 * 60.00124 * 3 2 1 7 7 C 1.38800 * 120.00029 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99944 * 179.97438 * 7 2 1 9 9 S 1.76207 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99587 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47101 * 180.02562 * 10 9 7 12 12 O 1.21267 * 119.99535 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.97438 * 11 10 9 14 14 C 1.38475 * 119.99931 * 179.97438 * 13 11 10 15 15 N 1.36322 * 126.80419 * 359.41010 * 14 13 11 16 16 H 0.97007 * 126.16628 * 359.97438 * 15 14 13 17 17 C 1.36273 * 107.67098 * 179.87509 * 15 14 13 18 18 N 1.29949 * 109.50304 * 0.40516 * 17 15 14 19 19 C 1.36041 * 109.19871 * 359.74788 * 18 17 15 20 20 C 1.46494 * 126.37862 * 179.97438 * 19 18 17 21 21 O 1.21642 * 119.99679 * 180.02562 * 20 19 18 22 22 O 1.34878 * 120.00259 * 0.03106 * 20 19 18 23 23 H 0.96989 * 120.00216 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47515 * 60.00084 * 10 9 7 25 25 H 1.09006 * 109.47576 * 299.99886 * 10 9 7 26 26 H 0.96996 * 119.99859 * 359.72574 * 13 11 10 27 27 H 1.08002 * 125.25365 * 180.13054 * 17 15 14 28 28 H 0.96701 * 117.00067 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3028 -0.0001 12 8 0.7914 -5.5023 0.0000 13 7 2.8443 -6.3431 -0.0007 14 6 2.3588 -7.6399 -0.0008 15 7 1.0502 -8.0220 0.0110 16 1 0.2813 -7.4308 0.0214 17 6 1.0170 -9.3843 0.0033 18 7 2.2310 -9.8479 -0.0038 19 6 3.1072 -8.8072 -0.0067 20 6 4.5691 -8.9022 -0.0140 21 8 5.2442 -7.8903 -0.0154 22 8 5.1663 -10.1115 -0.0191 23 1 -0.4850 0.8399 0.0004 24 1 3.1245 -3.7313 0.8905 25 1 3.1246 -3.7313 -0.8895 26 1 3.8010 -6.1834 -0.0048 27 1 0.1202 -9.9861 0.0073 28 1 6.1333 -10.1236 -0.0242 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601075661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:14 Heat of formation + Delta-G solvation = -97.086303 kcal Electronic energy + Delta-G solvation = -17572.291872 eV Core-core repulsion = 14328.468502 eV Total energy + Delta-G solvation = -3243.823371 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.44917 -40.97218 -40.71913 -37.14249 -36.21676 -34.61668 -33.74669 -31.70512 -29.65547 -27.70491 -25.54002 -23.77636 -22.08323 -21.80609 -19.96477 -19.81411 -18.88728 -18.09593 -17.62605 -17.39862 -16.90529 -16.68652 -16.63173 -15.98253 -15.70682 -15.39332 -15.06601 -14.56786 -14.19079 -13.96219 -13.20688 -12.94281 -12.66638 -12.57017 -12.43083 -11.99071 -11.80105 -11.61427 -11.44990 -11.26331 -11.18476 -10.38065 -9.22619 -8.71106 -8.39061 -6.16740 -0.03880 0.95436 1.06269 1.35080 1.40269 1.43174 1.49253 1.58478 2.03667 2.21418 2.22168 2.33612 2.96439 3.16638 3.38553 3.61098 3.89194 4.14763 4.35044 4.42319 4.50358 4.53925 5.25941 5.40945 5.48582 5.90346 6.17267 6.22946 6.56641 6.62134 7.03925 7.05639 8.70075 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.036938 B = 0.003881 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.841532 B = 7212.712340 C = 7955.398622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.016 3.984 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.129 6.129 10 C -0.134 4.134 11 C 0.544 3.456 12 O -0.530 6.530 13 N -0.622 5.622 14 C 0.313 3.687 15 N -0.560 5.560 16 H 0.443 0.557 17 C 0.215 3.785 18 N -0.457 5.457 19 C -0.114 4.114 20 C 0.581 3.419 21 O -0.549 6.549 22 O -0.495 6.495 23 H 0.272 0.728 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.445 0.555 27 H 0.270 0.730 28 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.970 -17.336 0.018 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.696 4.696 8 H 0.103 0.897 9 S 0.098 5.902 10 C -0.285 4.285 11 C 0.333 3.667 12 O -0.405 6.405 13 N -0.274 5.274 14 C 0.092 3.908 15 N -0.175 5.175 16 H 0.291 0.709 17 C -0.071 4.071 18 N -0.175 5.175 19 C -0.242 4.242 20 C 0.427 3.573 21 O -0.441 6.441 22 O -0.307 6.307 23 H 0.081 0.919 24 H 0.139 0.861 25 H 0.139 0.861 26 H 0.289 0.711 27 H 0.286 0.714 28 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges 4.934 -18.104 0.021 18.765 hybrid contribution 1.988 2.445 -0.001 3.151 sum 6.923 -15.660 0.021 17.122 Atomic orbital electron populations 1.70151 1.07813 1.28668 1.47913 1.26069 0.95961 1.03187 0.93696 0.84934 0.78647 0.76528 0.78056 1.18161 1.20001 1.19987 1.23242 0.95501 0.91898 1.58941 0.89743 1.85420 1.08887 0.98741 1.97111 1.23378 1.04739 0.92347 1.08049 1.20514 0.85813 0.86744 0.73673 1.90508 1.16482 1.85232 1.48299 1.42978 1.12758 1.00606 1.71089 1.18288 0.85861 0.85585 1.01088 1.43924 1.06428 1.10772 1.56418 0.70939 1.26142 0.98899 0.79356 1.02742 1.70643 0.99860 1.29259 1.17788 1.19065 0.91692 0.87830 1.25577 1.18940 0.86251 0.81097 0.71013 1.90861 1.65484 1.37720 1.50080 1.84634 1.30092 1.31069 1.84893 0.91898 0.86096 0.86111 0.71138 0.71428 0.70576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.50 13.22 21.65 0.29 -53.21 15 2 C 0.02 0.88 5.49 84.86 0.47 1.34 15 3 Si 1.00 42.20 29.55 68.60 2.03 44.22 15 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 5 H -0.27 -11.33 7.11 99.48 0.71 -10.63 15 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 7 C -0.55 -29.73 9.50 67.95 0.65 -29.08 15 8 H 0.08 4.28 7.80 -2.91 -0.02 4.25 15 9 S -0.13 -6.56 20.57 -56.49 -1.16 -7.72 15 10 C -0.13 -4.84 6.16 71.24 0.44 -4.40 15 11 C 0.54 17.89 7.81 87.66 0.68 18.58 15 12 O -0.53 -19.80 13.45 -2.99 -0.04 -19.84 15 13 N -0.62 -16.84 5.36 -306.69 -1.65 -18.49 15 14 C 0.31 8.34 7.73 131.92 1.02 9.36 15 15 N -0.56 -12.64 5.75 -194.04 -1.12 -13.75 15 16 H 0.44 10.21 6.55 -92.70 -0.61 9.61 15 17 C 0.21 3.83 13.01 180.02 2.34 6.17 15 18 N -0.46 -11.06 11.31 -187.54 -2.12 -13.18 15 19 C -0.11 -3.01 7.07 40.75 0.29 -2.72 15 20 C 0.58 14.31 8.30 69.97 0.58 14.90 15 21 O -0.55 -14.70 15.93 19.37 0.31 -14.40 15 22 O -0.49 -9.33 13.44 -57.92 -0.78 -10.11 15 23 H 0.27 14.86 8.31 -92.72 -0.77 14.09 15 24 H 0.12 3.92 8.14 -2.40 -0.02 3.90 15 25 H 0.12 3.92 8.14 -2.39 -0.02 3.90 15 26 H 0.44 10.87 6.90 -92.71 -0.64 10.23 15 27 H 0.27 1.74 8.06 -2.91 -0.02 1.72 15 28 H 0.43 3.44 9.11 -74.06 -0.67 2.76 15 Total: -1.00 -74.24 277.99 1.57 -72.67 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.66 Total: 19.65 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 6.46 Total: 14.15 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -4.60 Total: -98.63 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.51 Total: -44.34 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: -6.56 SS G_CDS: -1.16 Total: -7.72 kcal Total: -74.24 1.57 -72.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.416 kcal (2) G-P(sol) polarization free energy of solvation -74.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds