Wall clock time and date at job start Mon Mar 30 2020 01:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42105 * 114.64797 * 2 1 4 4 N 1.49358 * 108.33074 * 121.10156 * 2 1 3 5 5 C 1.31361 * 120.00223 * 297.53326 * 4 2 1 6 6 O 1.22439 * 119.99743 * 0.02562 * 5 4 2 7 7 C 1.47508 * 119.99912 * 179.97438 * 5 4 2 8 8 H 1.08003 * 119.99852 * 0.02562 * 7 5 4 9 9 C 1.41346 * 119.99951 * 179.97438 * 7 5 4 10 10 N 1.29924 * 120.00018 * 0.02562 * 9 7 5 11 11 Si 1.86796 * 119.99931 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47195 * 60.00775 * 11 9 7 13 13 H 1.48509 * 109.47010 * 180.02562 * 11 9 7 14 14 H 1.48497 * 109.47343 * 300.00331 * 11 9 7 15 15 C 1.76198 * 108.33559 * 238.89010 * 2 1 3 16 16 C 1.38246 * 119.97089 * 29.72867 * 15 2 1 17 17 C 1.38199 * 120.02449 * 179.72171 * 16 15 2 18 18 C 1.38464 * 119.97380 * 0.52941 * 17 16 15 19 19 F 1.35094 * 120.02888 * 179.72581 * 18 17 16 20 20 C 1.38461 * 119.94618 * 359.74437 * 18 17 16 21 21 C 1.38204 * 119.97465 * 0.02562 * 20 18 17 22 22 H 1.08995 * 109.47020 * 60.00420 * 1 2 3 23 23 H 1.09001 * 109.47013 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47266 * 300.00183 * 1 2 3 25 25 H 0.96995 * 120.00346 * 179.97438 * 10 9 7 26 26 H 1.08007 * 119.99158 * 359.97438 * 16 15 2 27 27 H 1.08001 * 120.01596 * 180.29380 * 17 16 15 28 28 H 1.08003 * 120.01070 * 179.97438 * 20 18 17 29 29 H 1.07998 * 119.98508 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.4066 1.2916 0.0000 4 7 2.2837 -0.7324 1.2140 5 6 1.9911 -0.2761 2.4106 6 8 1.3329 0.7493 2.5307 7 6 2.4546 -0.9998 3.6095 8 1 3.0348 -1.9045 3.5034 9 6 2.1402 -0.5086 4.8970 10 7 1.4426 0.5800 5.0245 11 14 2.7277 -1.4246 6.4152 12 1 4.2111 -1.4921 6.4095 13 1 2.2690 -0.7094 7.6333 14 1 2.1696 -2.8007 6.4101 15 6 2.3683 -0.8642 -1.4320 16 6 1.5984 -0.8634 -2.5802 17 6 2.0348 -1.5361 -3.7058 18 6 3.2384 -2.2200 -3.6798 19 9 3.6634 -2.8825 -4.7777 20 6 4.0059 -2.2247 -2.5274 21 6 3.5697 -1.5474 -1.4045 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.2265 0.9169 5.9080 26 1 0.6574 -0.3336 -2.5989 27 1 1.4354 -1.5315 -4.6043 28 1 4.9447 -2.7582 -2.5058 29 1 4.1680 -1.5513 -0.5054 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001635435062.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:19 Heat of formation + Delta-G solvation = -74.677399 kcal Electronic energy + Delta-G solvation = -18070.978176 eV Core-core repulsion = 14808.206567 eV Total energy + Delta-G solvation = -3262.771609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.046 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.16661 -40.18940 -39.26285 -37.28574 -34.87470 -33.39154 -32.53840 -32.03116 -30.20131 -28.39336 -24.52931 -24.33020 -22.83475 -19.95374 -18.92762 -18.56944 -17.79901 -17.69321 -17.32714 -16.83101 -16.50796 -16.24687 -15.78063 -15.10574 -14.82658 -14.59985 -14.46725 -14.40842 -14.20311 -13.81688 -13.71220 -13.31298 -13.05641 -12.73230 -12.47096 -12.32290 -12.10061 -11.97393 -10.93694 -10.45046 -10.36017 -10.34917 -10.09262 -9.89351 -8.28110 -6.76330 -1.39120 -0.58241 0.00173 1.40238 1.44566 1.56347 1.75280 2.07406 2.29298 2.40909 2.74265 2.93853 3.19088 3.46085 3.66830 3.80689 3.95145 4.02644 4.07396 4.12614 4.44920 4.67869 4.74966 4.83984 4.88737 4.92590 5.35714 5.56156 5.91822 6.24579 6.78613 6.87494 8.38280 8.67556 Molecular weight = 271.05amu Principal moments of inertia in cm(-1) A = 0.032857 B = 0.005003 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.982744 B = 5595.749768 C = 6174.070980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.617 4.617 2 S 2.371 3.629 3 O -1.004 7.004 4 N -1.141 6.141 5 C 0.546 3.454 6 O -0.668 6.668 7 C -0.539 4.539 8 H 0.082 0.918 9 C 0.023 3.977 10 N -0.813 5.813 11 Si 1.000 3.000 12 H -0.258 1.258 13 H -0.268 1.268 14 H -0.249 1.249 15 C -0.568 4.568 16 C -0.012 4.012 17 C -0.154 4.154 18 C 0.153 3.847 19 F -0.126 7.126 20 C -0.165 4.165 21 C 0.003 3.997 22 H 0.165 0.835 23 H 0.159 0.841 24 H 0.112 0.888 25 H 0.278 0.722 26 H 0.187 0.813 27 H 0.190 0.810 28 H 0.171 0.829 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -8.767 -19.211 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.774 4.774 2 S 2.574 3.426 3 O -0.990 6.990 4 N -1.051 6.051 5 C 0.352 3.648 6 O -0.561 6.561 7 C -0.579 4.579 8 H 0.100 0.900 9 C -0.193 4.193 10 N -0.442 5.442 11 Si 0.818 3.182 12 H -0.182 1.182 13 H -0.192 1.192 14 H -0.173 1.173 15 C -0.668 4.668 16 C -0.032 4.032 17 C -0.174 4.174 18 C 0.134 3.866 19 F -0.104 7.104 20 C -0.185 4.185 21 C -0.017 4.017 22 H 0.183 0.817 23 H 0.177 0.823 24 H 0.130 0.870 25 H 0.088 0.912 26 H 0.204 0.796 27 H 0.207 0.793 28 H 0.189 0.811 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.754 -7.808 -19.037 20.590 hybrid contribution -0.081 -0.023 0.580 0.586 sum -0.835 -7.831 -18.458 20.068 Atomic orbital electron populations 1.30020 1.21411 1.13535 1.12466 1.10153 0.80619 0.73476 0.78391 1.93376 1.74599 1.43964 1.87091 1.70192 1.60222 1.63031 1.11616 1.17775 0.78843 0.82696 0.85532 1.90800 1.47692 1.28644 1.89000 1.21771 1.36162 1.10833 0.89130 0.90025 1.27335 0.92905 0.95102 1.03997 1.69833 1.28951 1.19812 1.25649 0.85073 0.79578 0.78951 0.74605 1.18168 1.19223 1.17300 1.28038 1.07469 1.19381 1.11865 1.21331 0.98763 0.93963 0.89098 1.21578 0.95950 0.98703 1.01124 1.18129 0.93862 0.91718 0.82932 1.91566 1.89700 1.77870 1.51310 1.21479 1.02851 1.02806 0.91342 1.20947 0.92318 0.89395 0.98993 0.81703 0.82275 0.86966 0.91198 0.79565 0.79294 0.81119 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -18.38 9.85 113.37 1.12 -17.26 15 2 S 2.37 94.52 3.85 -56.49 -0.22 94.30 15 3 O -1.00 -51.92 17.57 -138.04 -2.43 -54.34 15 4 N -1.14 -59.08 9.78 -181.02 -1.77 -60.85 15 5 C 0.55 35.12 7.35 87.21 0.64 35.76 15 6 O -0.67 -46.75 13.17 4.17 0.05 -46.69 15 7 C -0.54 -34.22 9.73 25.48 0.25 -33.97 15 8 H 0.08 4.84 7.87 -2.91 -0.02 4.82 15 9 C 0.02 1.36 5.53 85.74 0.47 1.83 15 10 N -0.81 -52.10 11.85 22.06 0.26 -51.84 15 11 Si 1.00 43.39 29.57 68.60 2.03 45.42 15 12 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 13 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 14 H -0.25 -10.03 7.11 99.48 0.71 -9.32 15 15 C -0.57 -14.97 5.94 22.27 0.13 -14.84 15 16 C -0.01 -0.19 9.45 22.26 0.21 0.02 15 17 C -0.15 -1.96 10.03 22.31 0.22 -1.73 15 18 C 0.15 2.48 7.30 22.38 0.16 2.65 15 19 F -0.13 -1.99 17.27 44.97 0.78 -1.22 15 20 C -0.17 -3.12 10.03 22.31 0.22 -2.90 15 21 C 0.00 0.08 9.56 22.26 0.21 0.29 15 22 H 0.16 2.89 7.45 -2.39 -0.02 2.87 15 23 H 0.16 3.63 8.14 -2.39 -0.02 3.61 15 24 H 0.11 4.49 6.97 -2.39 -0.02 4.47 15 25 H 0.28 15.91 8.28 -92.71 -0.77 15.14 15 26 H 0.19 1.36 6.96 -2.91 -0.02 1.34 15 27 H 0.19 0.91 8.06 -2.91 -0.02 0.89 15 28 H 0.17 2.39 8.06 -2.91 -0.02 2.36 15 29 H 0.14 4.18 7.88 -2.91 -0.02 4.16 15 Total: -1.00 -98.76 278.81 3.54 -95.22 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.19 Total: 10.15 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 3.65 Total: -30.16 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -1.51 Total: -112.69 kcal Atomic # 8 Polarization: -98.66 SS G_CDS: -2.37 Total: -101.03 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.22 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 94.52 SS G_CDS: -0.22 Total: 94.30 kcal Total: -98.76 3.54 -95.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001635435062.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.545 kcal (2) G-P(sol) polarization free energy of solvation -98.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds