Wall clock time and date at job start Mon Mar 30 2020 00:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31311 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48502 * 109.47337 * 239.99935 * 3 2 1 5 5 H 1.48492 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47039 * 120.00152 * 3 2 1 7 7 C 1.39044 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00024 * 196.83333 * 7 2 1 9 9 N 1.37045 * 119.99772 * 16.82915 * 7 2 1 10 10 C 1.38294 * 126.44060 * 37.78932 * 9 7 2 11 11 C 1.38746 * 133.87013 * 0.03475 * 10 9 7 12 12 C 1.37945 * 119.85492 * 179.97438 * 11 10 9 13 13 C 1.38778 * 120.46708 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.54360 * 0.02562 * 13 12 11 15 15 C 1.39889 * 119.77785 * 359.96984 * 14 13 12 16 16 N 1.35504 * 133.31401 * 180.02562 * 15 14 13 17 17 C 1.31076 * 109.70601 * 179.97438 * 16 15 14 18 18 C 1.47810 * 125.14256 * 179.73311 * 17 16 15 19 19 N 1.30897 * 125.89660 * 174.40630 * 18 17 16 20 20 O 1.41667 * 107.81573 * 180.02562 * 19 18 17 21 21 N 1.41641 * 107.68987 * 359.97438 * 20 19 18 22 22 C 1.30446 * 107.97618 * 359.70425 * 21 20 19 23 23 N 1.38860 * 125.84761 * 180.28640 * 22 21 20 24 24 H 0.97004 * 119.99476 * 354.83753 * 1 2 3 25 25 H 1.07998 * 120.06674 * 0.02562 * 11 10 9 26 26 H 1.08002 * 119.76277 * 179.97438 * 12 11 10 27 27 H 1.08000 * 119.72428 * 179.97438 * 13 12 11 28 28 H 1.08002 * 120.11283 * 180.02562 * 14 13 12 29 29 H 0.97002 * 119.99927 * 180.19218 * 23 22 21 30 30 H 0.96999 * 119.99633 * 0.19027 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 3.1009 1.6964 -1.2125 5 1 1.2822 2.7464 0.0006 6 1 3.1009 1.6963 1.2125 7 6 2.0083 -1.2042 -0.0005 8 1 3.0536 -1.2243 0.2703 9 7 1.3671 -2.3654 -0.3447 10 6 0.4085 -2.5134 -1.3305 11 6 -0.1876 -1.6419 -2.2306 12 6 -1.1384 -2.1106 -3.1133 13 6 -1.5044 -3.4493 -3.1079 14 6 -0.9252 -4.3291 -2.2220 15 6 0.0408 -3.8715 -1.3196 16 7 0.7715 -4.4783 -0.3531 17 6 1.5541 -3.6006 0.2259 18 6 2.4918 -3.8945 1.3301 19 7 3.3523 -3.0561 1.8498 20 8 4.0521 -3.7350 2.8776 21 7 3.5468 -5.0566 2.9420 22 6 2.6142 -5.1756 2.0378 23 7 1.8679 -6.3189 1.7848 24 1 -0.4849 0.8367 0.0756 25 1 0.0928 -0.5990 -2.2405 26 1 -1.6017 -1.4308 -3.8130 27 1 -2.2504 -3.8033 -3.8040 28 1 -1.2150 -5.3696 -2.2241 29 1 1.1944 -6.3139 1.0867 30 1 2.0201 -7.1226 2.3061 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000269001.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:53 Heat of formation + Delta-G solvation = 161.884506 kcal Electronic energy + Delta-G solvation = -20113.937025 eV Core-core repulsion = 16914.025366 eV Total energy + Delta-G solvation = -3199.911659 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.13613 -40.13252 -36.38417 -35.10098 -34.39857 -32.37898 -31.55279 -30.17690 -29.35593 -28.31645 -25.55536 -24.05708 -22.02115 -21.16230 -20.75121 -19.82315 -18.17129 -17.01058 -16.43977 -16.19791 -15.72141 -15.35082 -15.25334 -14.83389 -14.18585 -14.07193 -13.30358 -13.19545 -12.94727 -12.19549 -11.91204 -11.78773 -11.57885 -11.43909 -11.23054 -11.09563 -10.97345 -10.88356 -10.54716 -10.19498 -9.78162 -9.19876 -9.08258 -8.49822 -7.47853 -7.19493 -7.00210 -4.78386 0.99542 1.89680 2.51345 2.68032 2.90320 2.91285 2.93575 3.07127 3.36821 3.57124 3.76210 3.88890 4.40693 4.48917 4.83097 4.90747 5.37273 5.67300 5.75993 5.82559 5.96791 6.30284 6.42966 6.48854 6.66994 6.83318 6.93790 7.24419 7.28244 7.33645 7.39847 7.58443 7.78951 7.89826 8.02901 8.26356 8.76972 8.96011 9.89152 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.009682 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.743527 B = 2891.388276 C = 4755.004478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.056 3.944 3 Si 0.937 3.063 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.335 4.335 8 H 0.125 0.875 9 N -0.243 5.243 10 C 0.038 3.962 11 C -0.032 4.032 12 C -0.157 4.157 13 C -0.130 4.130 14 C -0.091 4.091 15 C 0.050 3.950 16 N -0.511 5.511 17 C 0.221 3.779 18 C 0.163 3.837 19 N -0.255 5.255 20 O 0.003 5.997 21 N -0.381 5.381 22 C 0.362 3.638 23 N -0.806 5.806 24 H 0.289 0.711 25 H 0.117 0.883 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.431 0.569 30 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.514 -4.191 -2.830 5.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.161 4.161 3 Si 0.759 3.241 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.143 0.857 9 N 0.088 4.912 10 C -0.079 4.079 11 C -0.052 4.052 12 C -0.179 4.179 13 C -0.151 4.151 14 C -0.111 4.111 15 C -0.078 4.078 16 N -0.238 5.238 17 C -0.033 4.033 18 C -0.021 4.021 19 N -0.002 5.002 20 O -0.124 6.124 21 N -0.148 5.148 22 C 0.083 3.917 23 N -0.365 5.365 24 H 0.100 0.900 25 H 0.135 0.865 26 H 0.130 0.870 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.267 0.733 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.433 -4.040 -1.664 4.391 hybrid contribution -0.549 1.107 -0.475 1.323 sum -0.981 -2.933 -2.138 3.760 Atomic orbital electron populations 1.69926 1.06741 1.30443 1.36169 1.25801 0.95596 1.01191 0.93471 0.85798 0.79504 0.78255 0.80507 1.18452 1.19811 1.18351 1.20182 0.96678 0.82023 1.47744 0.85726 1.41152 1.24614 1.06588 1.18849 1.18681 0.99067 0.95463 0.94660 1.20021 0.94649 0.98192 0.92370 1.20617 1.00294 0.95596 1.01357 1.20582 1.01097 0.93575 0.99804 1.19910 0.96843 0.98830 0.95529 1.18729 1.00218 0.90357 0.98495 1.69878 1.10827 1.30737 1.12327 1.19435 1.01474 0.84513 0.97904 1.22153 0.95154 0.89567 0.95201 1.80287 1.05280 1.14749 0.99838 1.93190 1.54490 1.16032 1.48649 1.79986 1.15341 0.97928 1.21581 1.22286 0.90561 0.88403 0.90409 1.41644 1.41956 1.09660 1.43197 0.89982 0.86523 0.87050 0.86980 0.86854 0.73284 0.76180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.56 10.82 55.50 0.60 -18.96 16 2 C 0.06 1.31 4.61 -17.48 -0.08 1.23 16 3 Si 0.94 18.06 29.59 -169.99 -5.03 13.03 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 7 C -0.33 -8.36 9.09 -14.92 -0.14 -8.50 16 8 H 0.13 3.09 6.94 -52.49 -0.36 2.73 16 9 N -0.24 -6.12 2.84 -57.20 -0.16 -6.28 16 10 C 0.04 0.91 6.12 -83.83 -0.51 0.40 16 11 C -0.03 -0.71 8.62 -39.50 -0.34 -1.05 16 12 C -0.16 -2.90 10.03 -39.49 -0.40 -3.30 16 13 C -0.13 -2.23 10.01 -39.60 -0.40 -2.62 16 14 C -0.09 -1.71 10.10 -39.18 -0.40 -2.11 16 15 C 0.05 1.13 7.21 -84.69 -0.61 0.52 16 16 N -0.51 -11.34 9.72 -8.61 -0.08 -11.43 16 17 C 0.22 5.24 7.74 -154.16 -1.19 4.05 16 18 C 0.16 3.61 7.20 -80.86 -0.58 3.03 16 19 N -0.25 -5.82 11.27 34.46 0.39 -5.43 16 20 O 0.00 0.07 13.62 12.24 0.17 0.24 16 21 N -0.38 -7.49 12.96 32.48 0.42 -7.07 16 22 C 0.36 6.82 8.60 -153.64 -1.32 5.50 16 23 N -0.81 -11.61 9.09 32.43 0.29 -11.32 16 24 H 0.29 6.47 8.31 -40.82 -0.34 6.13 16 25 H 0.12 2.61 6.52 -52.49 -0.34 2.27 16 26 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 28 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.43 6.30 7.33 -40.82 -0.30 6.00 16 30 H 0.41 4.45 8.95 -40.82 -0.37 4.09 16 LS Contribution 272.79 15.07 4.11 4.11 Total: -1.00 -27.78 272.79 -7.03 -34.81 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -1.77 Total: 11.16 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -5.96 Total: -2.86 kcal Atomic # 7 Polarization: -61.94 SS G_CDS: 1.46 Total: -60.48 kcal Atomic # 8 Polarization: 0.07 SS G_CDS: 0.17 Total: 0.24 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.78 -7.03 -34.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000269001.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.695 kcal (2) G-P(sol) polarization free energy of solvation -27.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds