Wall clock time and date at job start Mon Mar 30 2020 00:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31311 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48502 * 109.47337 * 239.99935 * 3 2 1 5 5 H 1.48492 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47039 * 120.00152 * 3 2 1 7 7 C 1.39044 * 119.99967 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00024 * 196.83333 * 7 2 1 9 9 N 1.37045 * 119.99772 * 16.82915 * 7 2 1 10 10 C 1.38294 * 126.44060 * 37.78932 * 9 7 2 11 11 C 1.38746 * 133.87013 * 0.03475 * 10 9 7 12 12 C 1.37945 * 119.85492 * 179.97438 * 11 10 9 13 13 C 1.38778 * 120.46708 * 0.02562 * 12 11 10 14 14 C 1.37637 * 120.54360 * 0.02562 * 13 12 11 15 15 C 1.39889 * 119.77785 * 359.96984 * 14 13 12 16 16 N 1.35504 * 133.31401 * 180.02562 * 15 14 13 17 17 C 1.31076 * 109.70601 * 179.97438 * 16 15 14 18 18 C 1.47810 * 125.14256 * 179.73311 * 17 16 15 19 19 N 1.30897 * 125.89660 * 174.40630 * 18 17 16 20 20 O 1.41667 * 107.81573 * 180.02562 * 19 18 17 21 21 N 1.41641 * 107.68987 * 359.97438 * 20 19 18 22 22 C 1.30446 * 107.97618 * 359.70425 * 21 20 19 23 23 N 1.38860 * 125.84761 * 180.28640 * 22 21 20 24 24 H 0.97004 * 119.99476 * 354.83753 * 1 2 3 25 25 H 1.07998 * 120.06674 * 0.02562 * 11 10 9 26 26 H 1.08002 * 119.76277 * 179.97438 * 12 11 10 27 27 H 1.08000 * 119.72428 * 179.97438 * 13 12 11 28 28 H 1.08002 * 120.11283 * 180.02562 * 14 13 12 29 29 H 0.97002 * 119.99927 * 180.19218 * 23 22 21 30 30 H 0.96999 * 119.99633 * 0.19027 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 3.1009 1.6964 -1.2125 5 1 1.2822 2.7464 0.0006 6 1 3.1009 1.6963 1.2125 7 6 2.0083 -1.2042 -0.0005 8 1 3.0536 -1.2243 0.2703 9 7 1.3671 -2.3654 -0.3447 10 6 0.4085 -2.5134 -1.3305 11 6 -0.1876 -1.6419 -2.2306 12 6 -1.1384 -2.1106 -3.1133 13 6 -1.5044 -3.4493 -3.1079 14 6 -0.9252 -4.3291 -2.2220 15 6 0.0408 -3.8715 -1.3196 16 7 0.7715 -4.4783 -0.3531 17 6 1.5541 -3.6006 0.2259 18 6 2.4918 -3.8945 1.3301 19 7 3.3523 -3.0561 1.8498 20 8 4.0521 -3.7350 2.8776 21 7 3.5468 -5.0566 2.9420 22 6 2.6142 -5.1756 2.0378 23 7 1.8679 -6.3189 1.7848 24 1 -0.4849 0.8367 0.0756 25 1 0.0928 -0.5990 -2.2405 26 1 -1.6017 -1.4308 -3.8130 27 1 -2.2504 -3.8033 -3.8040 28 1 -1.2150 -5.3696 -2.2241 29 1 1.1944 -6.3139 1.0867 30 1 2.0201 -7.1226 2.3061 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000269001.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:53 Heat of formation + Delta-G solvation = 145.180701 kcal Electronic energy + Delta-G solvation = -20114.661356 eV Core-core repulsion = 16914.025366 eV Total energy + Delta-G solvation = -3200.635991 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.81506 -41.75513 -37.93882 -36.60545 -36.07069 -34.03391 -33.28245 -31.66970 -30.92073 -29.94228 -27.32222 -25.70865 -23.59443 -22.75499 -22.35963 -21.48152 -19.84840 -18.54972 -18.03650 -17.65103 -17.40372 -16.99887 -16.77849 -16.42608 -15.88687 -15.61417 -14.89527 -14.77997 -14.55310 -13.84840 -13.50645 -13.40098 -13.18426 -13.02567 -12.78564 -12.68558 -12.56186 -12.37264 -12.10793 -11.83382 -11.45177 -10.91791 -10.78443 -9.91551 -9.13741 -8.84258 -8.68063 -6.61345 -0.67506 0.31501 0.96266 1.09230 1.30017 1.36718 1.42245 1.53754 1.76984 1.95783 2.14165 2.19245 2.68331 2.81416 3.23869 3.31741 3.84462 4.06177 4.25573 4.39918 4.50210 4.75713 4.85318 4.87200 5.06235 5.16554 5.36024 5.74131 5.79814 5.85846 5.90751 6.00289 6.11816 6.27313 6.50657 6.75330 7.04125 7.20656 8.17721 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.009682 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.743527 B = 2891.388276 C = 4755.004478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.025 3.975 3 Si 0.997 3.003 4 H -0.256 1.256 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.368 4.368 8 H 0.113 0.887 9 N -0.265 5.265 10 C 0.012 3.988 11 C -0.069 4.069 12 C -0.137 4.137 13 C -0.118 4.118 14 C -0.091 4.091 15 C 0.022 3.978 16 N -0.496 5.496 17 C 0.198 3.802 18 C 0.155 3.845 19 N -0.276 5.276 20 O -0.010 6.010 21 N -0.382 5.382 22 C 0.369 3.631 23 N -0.778 5.778 24 H 0.293 0.707 25 H 0.101 0.899 26 H 0.146 0.854 27 H 0.162 0.838 28 H 0.146 0.854 29 H 0.434 0.566 30 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.118 -5.244 -4.260 7.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.498 4.498 8 H 0.130 0.870 9 N 0.065 4.935 10 C -0.104 4.104 11 C -0.089 4.089 12 C -0.158 4.158 13 C -0.138 4.138 14 C -0.111 4.111 15 C -0.105 4.105 16 N -0.224 5.224 17 C -0.056 4.056 18 C -0.029 4.029 19 N -0.022 5.022 20 O -0.135 6.135 21 N -0.153 5.153 22 C 0.090 3.910 23 N -0.338 5.338 24 H 0.104 0.896 25 H 0.119 0.881 26 H 0.164 0.836 27 H 0.180 0.820 28 H 0.163 0.837 29 H 0.270 0.730 30 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.054 -5.118 -3.104 6.329 hybrid contribution -0.195 1.253 -0.154 1.278 sum -2.250 -3.865 -3.258 5.533 Atomic orbital electron populations 1.69984 1.07806 1.31247 1.37210 1.26563 0.96261 1.03497 0.92513 0.84946 0.78432 0.74799 0.80211 1.17968 1.18386 1.18828 1.20233 0.96600 0.83058 1.49910 0.86968 1.41333 1.25573 1.06858 1.19774 1.19229 0.99257 0.96853 0.95095 1.20145 0.97004 0.97604 0.94162 1.21124 0.97884 0.97024 0.99755 1.21130 1.00828 0.92475 0.99407 1.20400 0.95382 1.00850 0.94425 1.19365 1.01519 0.90069 0.99547 1.69861 1.10326 1.30146 1.12018 1.19848 1.02321 0.84764 0.98714 1.22359 0.94716 0.90873 0.94982 1.80248 1.05865 1.15684 1.00430 1.93162 1.54786 1.17130 1.48381 1.79976 1.16170 0.96800 1.22349 1.22270 0.90598 0.88539 0.89575 1.41635 1.40482 1.08932 1.42784 0.89621 0.88074 0.83627 0.82025 0.83665 0.72970 0.73803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.65 10.82 21.68 0.23 -41.42 16 2 C 0.02 1.20 4.61 84.96 0.39 1.59 16 3 Si 1.00 37.94 29.59 68.60 2.03 39.97 16 4 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 5 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.37 -19.24 9.09 84.07 0.76 -18.47 16 8 H 0.11 5.93 6.94 -2.91 -0.02 5.91 16 9 N -0.26 -13.82 2.84 -334.90 -0.95 -14.77 16 10 C 0.01 0.56 6.12 38.85 0.24 0.80 16 11 C -0.07 -3.01 8.62 22.32 0.19 -2.82 16 12 C -0.14 -4.65 10.03 22.33 0.22 -4.42 16 13 C -0.12 -3.52 10.01 22.26 0.22 -3.30 16 14 C -0.09 -3.11 10.10 22.53 0.23 -2.89 16 15 C 0.02 0.99 7.21 39.58 0.29 1.27 16 16 N -0.50 -21.92 9.72 -181.14 -1.76 -23.68 16 17 C 0.20 9.60 7.74 136.33 1.05 10.66 16 18 C 0.16 7.02 7.20 44.08 0.32 7.34 16 19 N -0.28 -13.07 11.27 -44.90 -0.51 -13.57 16 20 O -0.01 -0.42 13.62 71.17 0.97 0.55 16 21 N -0.38 -14.93 12.96 -51.15 -0.66 -15.59 16 22 C 0.37 13.77 8.60 135.73 1.17 14.94 16 23 N -0.78 -21.13 9.09 -51.30 -0.47 -21.60 16 24 H 0.29 13.40 8.31 -92.71 -0.77 12.63 16 25 H 0.10 4.65 6.52 -2.91 -0.02 4.63 16 26 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 27 H 0.16 3.30 8.06 -2.91 -0.02 3.27 16 28 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.43 11.91 7.33 -92.71 -0.68 11.23 16 30 H 0.43 8.32 8.95 -92.71 -0.83 7.49 16 Total: -1.00 -62.72 272.79 3.70 -59.02 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: -0.27 Total: 26.40 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.08 Total: 4.70 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -4.11 Total: -130.63 kcal Atomic # 8 Polarization: -0.42 SS G_CDS: 0.97 Total: 0.55 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -62.72 3.70 -59.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000269001.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.197 kcal (2) G-P(sol) polarization free energy of solvation -62.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds