Wall clock time and date at job start Mon Mar 30 2020 01:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99803 * 2 1 4 4 H 1.48503 * 109.47262 * 269.99983 * 3 2 1 5 5 H 1.48505 * 109.47251 * 29.99992 * 3 2 1 6 6 H 1.48501 * 109.47259 * 150.00340 * 3 2 1 7 7 C 1.37873 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00131 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46978 * 179.97438 * 9 7 2 11 11 C 1.35560 * 124.77210 * 264.99294 * 10 9 7 12 12 C 1.36717 * 109.69501 * 180.02562 * 11 10 9 13 13 C 1.46304 * 126.79338 * 179.97438 * 12 11 10 14 14 C 1.35584 * 120.00153 * 0.02754 * 13 12 11 15 15 C 1.41237 * 120.00131 * 180.02562 * 14 13 12 16 16 O 1.21713 * 119.99910 * 359.97438 * 15 14 13 17 17 O 1.34997 * 119.99927 * 180.02562 * 15 14 13 18 18 C 1.47529 * 106.41572 * 0.02562 * 12 11 10 19 19 C 1.39241 * 133.97238 * 180.02562 * 18 12 11 20 20 C 1.37780 * 119.68125 * 179.97438 * 19 18 12 21 21 C 1.38738 * 120.29304 * 359.96821 * 20 19 18 22 22 C 1.37782 * 120.62913 * 359.84034 * 21 20 19 23 23 C 1.38000 * 124.77385 * 85.00241 * 10 9 7 24 24 H 0.96999 * 119.99900 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47083 * 59.99448 * 9 7 2 26 26 H 1.09005 * 109.46379 * 299.99596 * 9 7 2 27 27 H 1.07997 * 125.15533 * 0.03913 * 11 10 9 28 28 H 1.08002 * 120.00080 * 180.02562 * 13 12 11 29 29 H 1.08002 * 119.99767 * 359.97438 * 14 13 12 30 30 H 0.96697 * 113.99908 * 179.97438 * 17 15 14 31 31 H 1.08001 * 120.15795 * 359.92736 * 19 18 12 32 32 H 1.07992 * 119.85325 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.68763 * 180.02562 * 21 20 19 34 34 H 1.07997 * 120.03446 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6318 -4.2634 -1.1087 12 6 3.5129 -5.2469 -0.7544 13 6 4.2004 -6.1733 -1.6543 14 6 3.9871 -6.1034 -2.9914 15 6 4.6503 -6.9981 -3.8600 16 8 5.4137 -7.8314 -3.4082 17 8 4.4383 -6.9282 -5.1914 18 6 3.6324 -5.1901 0.7149 19 6 4.3603 -5.9154 1.6545 20 6 4.2483 -5.6049 2.9921 21 6 3.4156 -4.5745 3.4040 22 6 2.6926 -3.8461 2.4847 23 6 2.7898 -4.1466 1.1298 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.3241 -4.0388 -2.1193 28 1 4.8778 -6.9127 -1.2534 29 1 3.3093 -5.3642 -3.3922 30 1 4.9359 -7.5801 -5.7036 31 1 5.0090 -6.7181 1.3362 32 1 4.8120 -6.1654 3.7231 33 1 3.3355 -4.3391 4.4550 34 1 2.0470 -3.0463 2.8159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003394177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:04 Heat of formation + Delta-G solvation = -29.156850 kcal Electronic energy + Delta-G solvation = -19278.024026 eV Core-core repulsion = 16141.075784 eV Total energy + Delta-G solvation = -3136.948242 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93785 -39.96182 -36.73309 -35.99337 -34.44501 -33.11322 -31.19373 -29.78760 -28.43478 -27.13275 -24.65316 -23.15056 -22.23251 -20.92356 -20.41217 -18.41366 -18.00277 -16.92959 -16.80188 -16.01977 -15.64113 -15.36620 -15.13016 -14.64329 -14.19802 -13.68515 -13.51210 -13.36912 -13.08992 -12.53197 -12.41498 -11.76027 -11.67129 -11.48393 -11.40805 -11.19124 -11.05470 -10.92478 -10.60213 -10.44894 -10.40237 -10.28066 -9.58711 -8.82711 -8.79627 -7.81263 -7.00620 -6.40906 -4.52475 0.84683 1.62268 2.08614 2.96017 3.11440 3.18879 3.22627 3.48896 3.59755 3.65971 4.16394 4.32727 4.91697 4.98817 5.11153 5.20756 5.33965 5.45333 5.60226 5.64058 5.73974 5.94836 6.05105 6.13679 6.30575 6.42165 6.53310 6.58677 6.69717 6.77341 6.86436 6.94731 7.08958 7.24651 7.49076 7.67133 7.75596 7.81269 8.09063 8.54555 9.16598 10.64797 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.005390 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.804432 B = 5193.762584 C = 6743.575166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.229 3.771 10 N -0.433 5.433 11 C 0.141 3.859 12 C -0.234 4.234 13 C 0.101 3.899 14 C -0.289 4.289 15 C 0.521 3.479 16 O -0.546 6.546 17 O -0.513 6.513 18 C -0.082 4.082 19 C -0.090 4.090 20 C -0.142 4.142 21 C -0.119 4.119 22 C -0.100 4.100 23 C 0.094 3.906 24 H 0.270 0.730 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.173 0.827 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.401 0.599 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.098 -9.575 -0.741 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.085 0.915 9 C 0.111 3.889 10 N -0.106 5.106 11 C 0.002 3.998 12 C -0.241 4.241 13 C 0.081 3.919 14 C -0.309 4.309 15 C 0.372 3.628 16 O -0.441 6.441 17 O -0.323 6.323 18 C -0.086 4.086 19 C -0.108 4.108 20 C -0.161 4.161 21 C -0.139 4.139 22 C -0.120 4.120 23 C -0.011 4.011 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.190 0.810 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.257 0.743 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.604 -9.029 -0.345 10.141 hybrid contribution 0.593 0.730 -0.446 1.041 sum 5.197 -8.299 -0.791 9.824 Atomic orbital electron populations 1.69912 1.06114 1.27964 1.48554 1.24937 0.94958 0.99621 0.94046 0.86351 0.79800 0.82029 0.78565 1.20173 1.20764 1.19538 1.21303 0.93795 0.89594 1.53824 0.91533 1.19912 0.87020 0.81869 1.00113 1.44802 1.34940 1.27172 1.03652 1.22361 0.93920 0.91145 0.92363 1.18789 1.09361 1.04607 0.91306 1.21685 0.88631 0.90349 0.91224 1.20705 1.10904 1.06510 0.92794 1.19546 0.79370 0.82649 0.81258 1.90912 1.37409 1.38334 1.77421 1.85117 1.67705 1.59275 1.20161 1.18997 0.99661 0.97729 0.92210 1.20320 0.99161 0.99308 0.92026 1.20800 1.00916 0.99194 0.95222 1.20719 0.97928 0.96586 0.98649 1.20227 1.01459 1.00740 0.89558 1.18297 0.97806 0.96020 0.89006 0.92060 0.92974 0.93214 0.80987 0.85246 0.85080 0.74343 0.86509 0.86492 0.86185 0.85706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.65 13.29 55.43 0.74 -22.92 16 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.55 -13.86 9.39 -34.44 -0.32 -14.19 16 8 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.23 5.22 5.71 -5.19 -0.03 5.19 16 10 N -0.43 -8.71 2.73 -115.37 -0.31 -9.03 16 11 C 0.14 2.47 10.65 -16.45 -0.18 2.29 16 12 C -0.23 -3.92 6.24 -103.42 -0.65 -4.57 16 13 C 0.10 1.50 9.68 -37.29 -0.36 1.14 16 14 C -0.29 -4.10 9.46 -39.39 -0.37 -4.48 16 15 C 0.52 7.47 8.04 31.87 0.26 7.72 16 16 O -0.55 -9.12 16.84 -19.43 -0.33 -9.45 16 17 O -0.51 -5.95 13.54 -41.31 -0.56 -6.51 16 18 C -0.08 -1.46 6.36 -104.93 -0.67 -2.13 16 19 C -0.09 -1.37 10.09 -39.38 -0.40 -1.77 16 20 C -0.14 -2.01 10.03 -39.56 -0.40 -2.41 16 21 C -0.12 -1.79 10.01 -39.56 -0.40 -2.19 16 22 C -0.10 -1.79 9.97 -39.42 -0.39 -2.18 16 23 C 0.09 1.83 6.79 -83.95 -0.57 1.26 16 24 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 25 H 0.05 1.21 8.11 -51.93 -0.42 0.78 16 26 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.17 2.55 7.19 -52.49 -0.38 2.17 16 28 H 0.13 1.85 7.45 -52.49 -0.39 1.46 16 29 H 0.13 1.72 6.88 -52.49 -0.36 1.35 16 30 H 0.40 2.82 8.98 45.56 0.41 3.23 16 31 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 310.21 15.07 4.67 4.67 Total: -1.00 -29.28 310.21 -8.18 -37.46 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -2.80 Total: 5.39 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -4.57 Total: -14.65 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.42 Total: -31.95 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.89 Total: -15.96 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.28 -8.18 -37.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003394177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.300 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds