Wall clock time and date at job start Mon Mar 30 2020 01:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99803 * 2 1 4 4 H 1.48503 * 109.47262 * 269.99983 * 3 2 1 5 5 H 1.48505 * 109.47251 * 29.99992 * 3 2 1 6 6 H 1.48501 * 109.47259 * 150.00340 * 3 2 1 7 7 C 1.37873 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99899 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00131 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46978 * 179.97438 * 9 7 2 11 11 C 1.35560 * 124.77210 * 264.99294 * 10 9 7 12 12 C 1.36717 * 109.69501 * 180.02562 * 11 10 9 13 13 C 1.46304 * 126.79338 * 179.97438 * 12 11 10 14 14 C 1.35584 * 120.00153 * 0.02754 * 13 12 11 15 15 C 1.41237 * 120.00131 * 180.02562 * 14 13 12 16 16 O 1.21713 * 119.99910 * 359.97438 * 15 14 13 17 17 O 1.34997 * 119.99927 * 180.02562 * 15 14 13 18 18 C 1.47529 * 106.41572 * 0.02562 * 12 11 10 19 19 C 1.39241 * 133.97238 * 180.02562 * 18 12 11 20 20 C 1.37780 * 119.68125 * 179.97438 * 19 18 12 21 21 C 1.38738 * 120.29304 * 359.96821 * 20 19 18 22 22 C 1.37782 * 120.62913 * 359.84034 * 21 20 19 23 23 C 1.38000 * 124.77385 * 85.00241 * 10 9 7 24 24 H 0.96999 * 119.99900 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47083 * 59.99448 * 9 7 2 26 26 H 1.09005 * 109.46379 * 299.99596 * 9 7 2 27 27 H 1.07997 * 125.15533 * 0.03913 * 11 10 9 28 28 H 1.08002 * 120.00080 * 180.02562 * 13 12 11 29 29 H 1.08002 * 119.99767 * 359.97438 * 14 13 12 30 30 H 0.96697 * 113.99908 * 179.97438 * 17 15 14 31 31 H 1.08001 * 120.15795 * 359.92736 * 19 18 12 32 32 H 1.07992 * 119.85325 * 180.02562 * 20 19 18 33 33 H 1.08000 * 119.68763 * 180.02562 * 21 20 19 34 34 H 1.07997 * 120.03446 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6318 -4.2634 -1.1087 12 6 3.5129 -5.2469 -0.7544 13 6 4.2004 -6.1733 -1.6543 14 6 3.9871 -6.1034 -2.9914 15 6 4.6503 -6.9981 -3.8600 16 8 5.4137 -7.8314 -3.4082 17 8 4.4383 -6.9282 -5.1914 18 6 3.6324 -5.1901 0.7149 19 6 4.3603 -5.9154 1.6545 20 6 4.2483 -5.6049 2.9921 21 6 3.4156 -4.5745 3.4040 22 6 2.6926 -3.8461 2.4847 23 6 2.7898 -4.1466 1.1298 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8904 27 1 2.3241 -4.0388 -2.1193 28 1 4.8778 -6.9127 -1.2534 29 1 3.3093 -5.3642 -3.3922 30 1 4.9359 -7.5801 -5.7036 31 1 5.0090 -6.7181 1.3362 32 1 4.8120 -6.1654 3.7231 33 1 3.3355 -4.3391 4.4550 34 1 2.0470 -3.0463 2.8159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003394177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:04 Heat of formation + Delta-G solvation = -44.553787 kcal Electronic energy + Delta-G solvation = -19278.691687 eV Core-core repulsion = 16141.075784 eV Total energy + Delta-G solvation = -3137.615903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.27646 -41.08182 -38.00930 -37.06448 -35.91295 -34.81894 -32.57142 -31.19306 -29.75865 -28.68307 -26.12143 -24.65519 -23.53382 -22.22953 -21.66919 -19.64382 -19.13625 -18.83531 -18.01417 -17.49359 -16.88421 -16.47836 -16.40860 -16.28080 -15.70900 -14.96143 -14.77965 -14.63030 -14.40086 -14.25666 -13.70640 -13.42595 -13.17865 -12.75463 -12.72799 -12.55979 -12.48335 -12.34704 -12.30313 -11.92559 -11.73716 -11.55854 -11.23173 -10.77464 -10.06764 -9.13246 -8.50019 -8.19957 -6.55187 -0.35614 0.37271 0.82133 1.35673 1.37360 1.47618 1.72833 2.06165 2.32342 2.43869 2.57376 2.93774 3.05948 3.73876 3.81839 3.95965 4.16118 4.32134 4.36510 4.44336 4.61213 4.69628 4.71566 4.83212 4.88443 4.95986 5.10759 5.39436 5.45552 5.50556 5.63899 5.64921 5.71456 5.76211 5.81703 5.99500 6.28790 6.38354 6.60041 7.08009 7.17555 8.68635 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.005390 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.804432 B = 5193.762584 C = 6743.575166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.557 4.557 8 H 0.053 0.947 9 C 0.246 3.754 10 N -0.452 5.452 11 C 0.118 3.882 12 C -0.223 4.223 13 C 0.096 3.904 14 C -0.278 4.278 15 C 0.526 3.474 16 O -0.571 6.571 17 O -0.507 6.507 18 C -0.101 4.101 19 C -0.091 4.091 20 C -0.136 4.136 21 C -0.108 4.108 22 C -0.133 4.133 23 C 0.062 3.938 24 H 0.273 0.727 25 H 0.043 0.957 26 H 0.028 0.972 27 H 0.191 0.809 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.422 0.578 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.150 0.850 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.796 -10.575 -0.782 12.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.594 4.594 8 H 0.071 0.929 9 C 0.127 3.873 10 N -0.127 5.127 11 C -0.018 4.018 12 C -0.230 4.230 13 C 0.077 3.923 14 C -0.298 4.298 15 C 0.377 3.623 16 O -0.467 6.467 17 O -0.318 6.318 18 C -0.105 4.105 19 C -0.109 4.109 20 C -0.154 4.154 21 C -0.127 4.127 22 C -0.153 4.153 23 C -0.042 4.042 24 H 0.082 0.918 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.208 0.792 28 H 0.156 0.844 29 H 0.160 0.840 30 H 0.282 0.718 31 H 0.162 0.838 32 H 0.175 0.825 33 H 0.168 0.832 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.317 -10.060 -0.423 11.887 hybrid contribution 0.130 0.898 -0.469 1.021 sum 6.447 -9.162 -0.892 11.239 Atomic orbital electron populations 1.69996 1.07309 1.28850 1.49371 1.25689 0.95689 1.02624 0.93616 0.85424 0.78413 0.78359 0.78765 1.19418 1.20049 1.19735 1.21471 0.93261 0.91058 1.53655 0.92878 1.19408 0.87145 0.82345 0.98447 1.44573 1.35756 1.27445 1.04903 1.22727 0.94759 0.91651 0.92615 1.18948 1.08507 1.04131 0.91395 1.21645 0.89042 0.90396 0.91250 1.20896 1.10083 1.06090 0.92719 1.19490 0.78717 0.82011 0.82047 1.90909 1.38426 1.39269 1.78077 1.85072 1.67772 1.59960 1.19021 1.19330 1.00165 0.97937 0.93075 1.20738 0.98632 0.99325 0.92201 1.21263 1.00071 0.98480 0.95597 1.21117 0.96375 0.95658 0.99547 1.20357 1.03142 1.01868 0.89941 1.18720 0.98926 0.97192 0.89392 0.91788 0.93894 0.95402 0.79243 0.84426 0.84042 0.71842 0.83833 0.82502 0.83248 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.97 13.29 21.45 0.28 -49.69 16 2 C 0.03 1.32 5.46 84.65 0.46 1.78 16 3 Si 0.97 41.47 29.54 68.60 2.03 43.50 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.56 -29.22 9.39 25.60 0.24 -28.98 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.25 11.85 5.71 85.63 0.49 12.34 16 10 N -0.45 -19.01 2.73 -518.91 -1.42 -20.43 16 11 C 0.12 4.22 10.65 83.76 0.89 5.11 16 12 C -0.22 -7.39 6.24 -19.08 -0.12 -7.51 16 13 C 0.10 2.72 9.68 23.75 0.23 2.95 16 14 C -0.28 -7.38 9.46 22.39 0.21 -7.17 16 15 C 0.53 13.90 8.04 68.56 0.55 14.45 16 16 O -0.57 -17.88 16.84 19.14 0.32 -17.56 16 17 O -0.51 -10.39 13.54 -59.16 -0.80 -11.19 16 18 C -0.10 -3.56 6.36 -20.06 -0.13 -3.69 16 19 C -0.09 -2.57 10.09 22.40 0.23 -2.34 16 20 C -0.14 -3.42 10.03 22.28 0.22 -3.19 16 21 C -0.11 -3.07 10.01 22.28 0.22 -2.85 16 22 C -0.13 -4.90 9.97 22.37 0.22 -4.67 16 23 C 0.06 2.50 6.79 38.91 0.26 2.77 16 24 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 25 H 0.04 2.10 8.11 -2.39 -0.02 2.08 16 26 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.19 5.70 7.19 -2.91 -0.02 5.68 16 28 H 0.14 3.67 7.45 -2.91 -0.02 3.65 16 29 H 0.14 3.45 6.88 -2.91 -0.02 3.43 16 30 H 0.42 4.72 8.98 -74.06 -0.67 4.06 16 31 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 33 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -63.74 310.21 4.87 -58.86 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.47 Total: 17.49 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: 3.99 Total: -20.99 kcal Atomic # 7 Polarization: -68.98 SS G_CDS: -1.13 Total: -70.11 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -0.48 Total: -28.75 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -63.74 4.87 -58.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003394177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.309 kcal (2) G-P(sol) polarization free energy of solvation -63.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds