Wall clock time and date at job start Mon Mar 30 2020 01:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00064 * 2 1 4 4 H 1.48502 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47687 * 300.00739 * 3 2 1 6 6 H 1.48510 * 109.46899 * 60.00654 * 3 2 1 7 7 C 1.37876 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00175 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00349 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99600 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00189 * 179.97438 * 11 10 9 14 14 O 1.42901 * 109.46937 * 179.97438 * 13 11 10 15 15 C 1.34944 * 116.99900 * 180.02562 * 14 13 11 16 16 O 1.21659 * 120.00056 * 0.02562 * 15 14 13 17 17 C 1.46180 * 119.99754 * 179.97438 * 15 14 13 18 18 C 1.34102 * 119.24219 * 359.97438 * 17 15 14 19 19 O 1.34949 * 121.67558 * 180.34311 * 18 17 15 20 20 C 1.43250 * 116.76928 * 342.80787 * 19 18 17 21 21 C 1.53548 * 108.09244 * 45.51490 * 20 19 18 22 22 O 1.36225 * 119.23661 * 179.72722 * 17 15 14 23 23 H 0.96994 * 119.99427 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47163 * 59.99504 * 9 7 2 25 25 H 1.08999 * 109.46845 * 300.00015 * 9 7 2 26 26 H 0.97004 * 119.99762 * 359.97438 * 10 9 7 27 27 H 1.09006 * 109.47317 * 60.00220 * 13 11 10 28 28 H 1.08999 * 109.47314 * 299.99972 * 13 11 10 29 29 H 1.08001 * 119.16304 * 0.32454 * 18 17 15 30 30 H 1.09000 * 109.73927 * 165.16137 * 20 19 18 31 31 H 1.09001 * 109.73482 * 285.86462 * 20 19 18 32 32 H 1.09000 * 109.75069 * 61.44643 * 21 20 19 33 33 H 1.09005 * 109.75389 * 182.18385 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3963 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0009 13 6 2.7330 -6.0288 -0.0006 14 8 2.0185 -7.2663 0.0007 15 6 2.7534 -8.3981 0.0009 16 8 3.9683 -8.3345 0.0005 17 6 2.0897 -9.7005 0.0028 18 6 0.7497 -9.7529 0.0049 19 8 0.0865 -10.9281 0.0136 20 6 0.8330 -12.0930 -0.3576 21 6 2.1827 -12.0474 0.3731 22 8 2.8467 -10.8331 -0.0026 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4355 -0.0009 27 1 3.3604 -5.9710 0.8890 28 1 3.3590 -5.9712 -0.8910 29 1 0.1870 -8.8311 -0.0003 30 1 0.2862 -12.9894 -0.0651 31 1 0.9977 -12.0967 -1.4351 32 1 2.0188 -12.0632 1.4506 33 1 2.7897 -12.9038 0.0796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004871207.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:02 Heat of formation + Delta-G solvation = -173.094578 kcal Electronic energy + Delta-G solvation = -19954.236565 eV Core-core repulsion = 16367.904701 eV Total energy + Delta-G solvation = -3586.331864 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.45842 -40.37558 -38.69741 -37.46186 -36.28881 -34.27000 -32.69130 -32.40752 -29.87406 -28.72565 -26.67493 -25.72014 -23.07637 -22.25987 -20.14294 -19.99078 -18.77888 -18.54359 -17.30925 -17.16447 -16.84953 -16.31118 -15.71559 -15.29826 -15.20260 -15.02276 -14.67756 -14.49283 -14.28655 -13.98324 -13.11402 -13.07553 -12.58567 -12.55113 -12.01771 -11.79755 -11.44476 -11.13942 -10.99752 -10.95179 -10.70992 -10.55240 -10.35537 -9.43451 -9.21311 -8.79927 -8.59594 -8.00857 -6.20802 -4.28059 0.87474 1.86617 2.64435 2.84354 3.14967 3.22024 3.28670 3.31448 3.36182 3.86258 4.01873 4.32022 4.41549 4.50636 4.57610 4.89259 4.91334 5.06546 5.11062 5.15545 5.21849 5.31679 5.59611 6.19121 6.38012 6.91324 7.20955 7.28644 7.44284 7.58279 7.67237 7.90693 8.47863 8.69458 8.94026 9.38448 10.89401 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.053829 B = 0.002943 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.044395 B = 9510.959592 C = 9986.506920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.501 3.499 12 O -0.535 6.535 13 C 0.051 3.949 14 O -0.322 6.322 15 C 0.526 3.474 16 O -0.494 6.494 17 C -0.078 4.078 18 C 0.061 3.939 19 O -0.296 6.296 20 C 0.010 3.990 21 C 0.021 3.979 22 O -0.289 6.289 23 H 0.266 0.734 24 H 0.030 0.970 25 H 0.030 0.970 26 H 0.394 0.606 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.202 0.798 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.939 -22.874 -0.012 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.284 3.716 12 O -0.413 6.413 13 C -0.027 4.027 14 O -0.237 6.237 15 C 0.370 3.630 16 O -0.383 6.383 17 C -0.125 4.125 18 C -0.005 4.005 19 O -0.207 6.207 20 C -0.065 4.065 21 C -0.055 4.055 22 O -0.204 6.204 23 H 0.076 0.924 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.227 0.773 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.218 0.782 30 H 0.142 0.858 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.257 -22.887 -0.013 23.117 hybrid contribution 1.108 0.896 0.016 1.425 sum 4.365 -21.991 0.003 22.420 Atomic orbital electron populations 1.69983 1.06117 1.27314 1.48786 1.24955 0.94938 0.99516 0.94610 0.86335 0.79829 0.82817 0.77778 1.19593 1.20769 1.20764 1.21246 0.93386 0.90277 1.53381 0.91692 1.19191 0.88161 0.81521 0.98070 1.46360 1.11593 1.05293 1.72270 1.19842 0.89023 0.83952 0.78767 1.90705 1.16271 1.84556 1.49751 1.22543 0.94676 0.80639 1.04824 1.86130 1.39843 1.13554 1.84213 1.19769 0.85355 0.83780 0.74102 1.90907 1.14396 1.87694 1.45311 1.18917 0.89352 0.86247 1.17950 1.23816 0.91479 0.90222 0.95006 1.86161 1.38454 1.14215 1.81878 1.23812 0.93715 0.88262 1.00740 1.23706 0.94695 0.86812 1.00248 1.86417 1.36066 1.13015 1.84886 0.92420 0.95198 0.95206 0.77340 0.88466 0.88447 0.78198 0.85811 0.89681 0.90226 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -14.46 9.28 -34.44 -0.32 -14.78 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 10 N -0.71 -14.32 5.55 -61.47 -0.34 -14.66 16 11 C 0.50 9.79 7.91 -10.99 -0.09 9.71 16 12 O -0.54 -12.64 16.50 -14.36 -0.24 -12.88 16 13 C 0.05 0.77 5.86 36.00 0.21 0.98 16 14 O -0.32 -4.98 8.66 -47.93 -0.41 -5.40 16 15 C 0.53 7.85 7.84 33.92 0.27 8.12 16 16 O -0.49 -8.47 16.69 -24.94 -0.42 -8.89 16 17 C -0.08 -0.99 6.61 -37.85 -0.25 -1.24 16 18 C 0.06 0.66 10.62 29.28 0.31 0.97 16 19 O -0.30 -2.80 10.47 -30.65 -0.32 -3.12 16 20 C 0.01 0.06 7.29 37.44 0.27 0.33 16 21 C 0.02 0.14 7.31 37.44 0.27 0.42 16 22 O -0.29 -3.46 10.29 -45.83 -0.47 -3.93 16 23 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.39 6.72 8.32 -40.82 -0.34 6.38 16 27 H 0.10 1.28 8.13 -51.93 -0.42 0.85 16 28 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 29 H 0.20 2.12 7.33 -52.49 -0.38 1.73 16 30 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 302.55 15.07 4.56 4.56 Total: -1.00 -34.77 302.55 -5.01 -39.78 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.64 Total: 1.33 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: 0.55 Total: 12.58 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.40 Total: -39.60 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.86 Total: -34.21 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.77 -5.01 -39.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004871207.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.313 kcal (2) G-P(sol) polarization free energy of solvation -34.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds