Wall clock time and date at job start Mon Mar 30 2020 01:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00064 * 2 1 4 4 H 1.48502 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47687 * 300.00739 * 3 2 1 6 6 H 1.48510 * 109.46899 * 60.00654 * 3 2 1 7 7 C 1.37876 * 119.99798 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99873 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00175 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00349 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99600 * 359.97438 * 11 10 9 13 13 C 1.50694 * 120.00189 * 179.97438 * 11 10 9 14 14 O 1.42901 * 109.46937 * 179.97438 * 13 11 10 15 15 C 1.34944 * 116.99900 * 180.02562 * 14 13 11 16 16 O 1.21659 * 120.00056 * 0.02562 * 15 14 13 17 17 C 1.46180 * 119.99754 * 179.97438 * 15 14 13 18 18 C 1.34102 * 119.24219 * 359.97438 * 17 15 14 19 19 O 1.34949 * 121.67558 * 180.34311 * 18 17 15 20 20 C 1.43250 * 116.76928 * 342.80787 * 19 18 17 21 21 C 1.53548 * 108.09244 * 45.51490 * 20 19 18 22 22 O 1.36225 * 119.23661 * 179.72722 * 17 15 14 23 23 H 0.96994 * 119.99427 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47163 * 59.99504 * 9 7 2 25 25 H 1.08999 * 109.46845 * 300.00015 * 9 7 2 26 26 H 0.97004 * 119.99762 * 359.97438 * 10 9 7 27 27 H 1.09006 * 109.47317 * 60.00220 * 13 11 10 28 28 H 1.08999 * 109.47314 * 299.99972 * 13 11 10 29 29 H 1.08001 * 119.16304 * 0.32454 * 18 17 15 30 30 H 1.09000 * 109.73927 * 165.16137 * 20 19 18 31 31 H 1.09001 * 109.73482 * 285.86462 * 20 19 18 32 32 H 1.09000 * 109.75069 * 61.44643 * 21 20 19 33 33 H 1.09005 * 109.75389 * 182.18385 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3966 -1.2124 6 1 1.8905 2.3963 1.2127 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0009 13 6 2.7330 -6.0288 -0.0006 14 8 2.0185 -7.2663 0.0007 15 6 2.7534 -8.3981 0.0009 16 8 3.9683 -8.3345 0.0005 17 6 2.0897 -9.7005 0.0028 18 6 0.7497 -9.7529 0.0049 19 8 0.0865 -10.9281 0.0136 20 6 0.8330 -12.0930 -0.3576 21 6 2.1827 -12.0474 0.3731 22 8 2.8467 -10.8331 -0.0026 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6247 -2.5571 0.8897 26 1 3.1567 -3.4355 -0.0009 27 1 3.3604 -5.9710 0.8890 28 1 3.3590 -5.9712 -0.8910 29 1 0.1870 -8.8311 -0.0003 30 1 0.2862 -12.9894 -0.0651 31 1 0.9977 -12.0967 -1.4351 32 1 2.0188 -12.0632 1.4506 33 1 2.7897 -12.9038 0.0796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004871207.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:02 Heat of formation + Delta-G solvation = -198.699512 kcal Electronic energy + Delta-G solvation = -19955.346878 eV Core-core repulsion = 16367.904701 eV Total energy + Delta-G solvation = -3587.442178 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 271.098 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.32483 -41.48735 -40.29333 -38.31350 -37.45963 -36.17281 -34.41054 -33.46149 -30.98414 -29.94133 -28.37606 -26.49182 -24.75235 -23.53585 -21.66540 -20.98586 -19.67386 -19.56941 -18.84230 -18.21628 -18.04502 -17.58224 -17.11615 -16.90737 -16.40295 -16.11912 -15.86422 -15.70831 -15.30132 -14.97382 -14.59413 -14.45473 -14.08859 -13.79984 -13.69769 -13.21047 -12.90770 -12.75262 -12.23260 -12.21469 -11.93847 -11.85280 -11.46473 -11.43823 -10.91278 -10.82216 -9.91835 -9.43968 -8.29080 -6.45131 -0.08807 0.82294 1.45300 1.45521 1.54750 1.59196 1.66671 2.09749 2.22308 2.42501 2.85138 3.06482 3.33370 3.59768 3.70055 3.93292 3.97688 4.04255 4.04842 4.23927 4.43972 4.62429 4.79382 5.02356 5.11943 5.23714 5.42901 5.63379 5.67124 5.83285 6.09834 6.56636 6.64255 6.78472 7.21116 7.35966 8.83234 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.053829 B = 0.002943 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.044395 B = 9510.959592 C = 9986.506920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.503 3.497 12 O -0.581 6.581 13 C 0.062 3.938 14 O -0.333 6.333 15 C 0.529 3.471 16 O -0.522 6.522 17 C -0.099 4.099 18 C 0.086 3.914 19 O -0.302 6.302 20 C 0.005 3.995 21 C 0.014 3.986 22 O -0.314 6.314 23 H 0.269 0.731 24 H -0.006 1.006 25 H -0.006 1.006 26 H 0.413 0.587 27 H 0.123 0.877 28 H 0.124 0.876 29 H 0.199 0.801 30 H 0.161 0.839 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.464 -23.909 -0.029 24.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.288 3.712 12 O -0.461 6.461 13 C -0.015 4.015 14 O -0.249 6.249 15 C 0.375 3.625 16 O -0.413 6.413 17 C -0.146 4.146 18 C 0.019 3.981 19 O -0.213 6.213 20 C -0.069 4.069 21 C -0.060 4.060 22 O -0.231 6.231 23 H 0.078 0.922 24 H 0.012 0.988 25 H 0.012 0.988 26 H 0.249 0.751 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.216 0.784 30 H 0.179 0.821 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.821 -23.966 -0.030 24.446 hybrid contribution 0.536 1.037 0.025 1.168 sum 5.357 -22.929 -0.005 23.546 Atomic orbital electron populations 1.70135 1.08194 1.28535 1.49977 1.26033 0.95772 1.03813 0.93906 0.85120 0.79099 0.77428 0.77623 1.17693 1.20537 1.20531 1.21643 0.94427 0.90425 1.52825 0.89642 1.18644 0.88555 0.83699 0.94724 1.46031 1.11779 1.04678 1.72444 1.20565 0.89176 0.84583 0.76850 1.90683 1.18685 1.85259 1.51473 1.22421 0.92957 0.78864 1.07305 1.86116 1.40385 1.13920 1.84429 1.20114 0.85093 0.84081 0.73168 1.90881 1.15380 1.87932 1.47112 1.18703 0.89680 0.85804 1.20367 1.23781 0.90828 0.90981 0.92525 1.86156 1.39251 1.14646 1.81287 1.24199 0.93575 0.87894 1.01199 1.24097 0.95438 0.85735 1.00774 1.86367 1.37426 1.13899 1.85383 0.92217 0.98799 0.98812 0.75096 0.85882 0.85864 0.78429 0.82140 0.88997 0.89724 0.82702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.98 41.76 29.54 68.60 2.03 43.78 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.56 -29.49 9.28 25.60 0.24 -29.25 16 8 H 0.09 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.27 14.19 5.43 85.63 0.46 14.65 16 10 N -0.70 -28.37 5.55 -466.79 -2.59 -30.96 16 11 C 0.50 19.71 7.91 87.66 0.69 20.40 16 12 O -0.58 -28.26 16.50 15.99 0.26 -27.99 16 13 C 0.06 1.77 5.86 71.23 0.42 2.19 16 14 O -0.33 -10.14 8.66 -52.14 -0.45 -10.59 16 15 C 0.53 15.54 7.84 69.88 0.55 16.08 16 16 O -0.52 -17.56 16.69 24.63 0.41 -17.15 16 17 C -0.10 -2.45 6.61 23.39 0.15 -2.30 16 18 C 0.09 1.80 10.62 66.88 0.71 2.51 16 19 O -0.30 -5.16 10.47 -68.72 -0.72 -5.88 16 20 C 0.01 0.05 7.29 72.17 0.53 0.58 16 21 C 0.01 0.16 7.31 72.17 0.53 0.68 16 22 O -0.31 -7.18 10.29 -71.87 -0.74 -7.92 16 23 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 24 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.41 13.53 8.32 -92.71 -0.77 12.76 16 27 H 0.12 2.97 8.13 -2.38 -0.02 2.95 16 28 H 0.12 2.98 8.13 -2.39 -0.02 2.96 16 29 H 0.20 4.15 7.33 -2.91 -0.02 4.12 16 30 H 0.16 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.16 0.69 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -77.47 302.55 3.61 -73.86 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.38 Total: 11.52 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 4.74 Total: 26.26 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -2.30 Total: -85.88 kcal Atomic # 8 Polarization: -68.31 SS G_CDS: -1.24 Total: -69.55 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.78 kcal Total: -77.47 3.61 -73.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004871207.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.836 kcal (2) G-P(sol) polarization free energy of solvation -77.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds