Wall clock time and date at job start Mon Mar 30 2020 01:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31433 * 1 3 3 Si 1.86804 * 119.99764 * 2 1 4 4 H 1.48505 * 109.46762 * 269.99823 * 3 2 1 5 5 H 1.48499 * 109.47383 * 29.99435 * 3 2 1 6 6 H 1.48497 * 109.47209 * 150.00267 * 3 2 1 7 7 C 1.38755 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99884 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99775 * 359.97438 * 7 2 1 10 10 C 1.34310 * 116.99520 * 180.02562 * 9 7 2 11 11 O 1.21213 * 120.00413 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99894 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 10 15 15 C 1.39334 * 119.12780 * 124.99941 * 14 13 12 16 16 C 1.36576 * 119.94196 * 179.97438 * 15 14 13 17 17 C 1.40773 * 118.14582 * 359.97438 * 16 15 14 18 18 C 1.40427 * 121.37764 * 180.02562 * 17 16 15 19 19 C 1.36136 * 119.61441 * 180.02562 * 18 17 16 20 20 C 1.39358 * 120.86825 * 359.95371 * 19 18 17 21 21 C 1.36071 * 121.06685 * 0.02770 * 20 19 18 22 22 C 1.40592 * 119.74842 * 359.97438 * 21 20 19 23 23 N 1.31087 * 119.12658 * 304.73338 * 14 13 12 24 24 H 0.97006 * 120.00603 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99670 * 12 10 9 26 26 H 1.09000 * 109.47318 * 59.99268 * 12 10 9 27 27 H 1.09001 * 109.46832 * 299.99686 * 13 12 10 28 28 H 1.09004 * 109.47261 * 59.99705 * 13 12 10 29 29 H 1.08005 * 120.02656 * 359.97429 * 15 14 13 30 30 H 1.07995 * 120.92850 * 179.97438 * 16 15 14 31 31 H 1.08002 * 120.19607 * 359.95830 * 18 17 16 32 32 H 1.08001 * 119.56426 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.46667 * 180.02562 * 20 19 18 34 34 H 1.08005 * 120.12325 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0464 -1.4002 5 1 1.4457 2.6528 0.6999 6 1 3.5458 1.4403 0.7000 7 6 2.0081 -1.2016 0.0005 8 1 3.0881 -1.2016 0.0010 9 8 1.3336 -2.3701 0.0016 10 6 2.0652 -3.4964 0.0026 11 8 3.2756 -3.4330 0.0030 12 6 1.3811 -4.8393 0.0032 13 6 2.4348 -5.9485 0.0050 14 6 1.7507 -7.2912 0.0062 15 6 2.0653 -8.2136 -0.9896 16 6 1.4557 -9.4357 -1.0040 17 6 0.5171 -9.7215 0.0055 18 6 -0.1493 -10.9566 0.0558 19 6 -1.0506 -11.1947 1.0478 20 6 -1.3206 -10.2290 2.0156 21 6 -0.6929 -9.0219 1.9972 22 6 0.2446 -8.7383 0.9885 23 7 0.8793 -7.5625 0.9472 24 1 -0.4851 0.8400 -0.0004 25 1 0.7580 -4.9292 0.8931 26 1 0.7585 -4.9303 -0.8869 27 1 3.0582 -5.8588 -0.8847 28 1 3.0570 -5.8572 0.8954 29 1 2.7906 -7.9623 -1.7494 30 1 1.6872 -10.1624 -1.7686 31 1 0.0513 -11.7128 -0.6888 32 1 -1.5630 -12.1447 1.0855 33 1 -2.0396 -10.4421 2.7927 34 1 -0.9134 -8.2847 2.7550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021431827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:46 Heat of formation + Delta-G solvation = -36.336142 kcal Electronic energy + Delta-G solvation = -18952.253263 eV Core-core repulsion = 15814.993704 eV Total energy + Delta-G solvation = -3137.259559 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93861 -38.94168 -37.51982 -35.28996 -33.68047 -33.00469 -32.07461 -30.26566 -29.68722 -26.20993 -24.74722 -23.74347 -22.32013 -21.92615 -19.62484 -18.25416 -17.66086 -17.32952 -16.67638 -15.95287 -15.20608 -14.86002 -14.62433 -14.53870 -14.35288 -14.19644 -13.88133 -13.23288 -13.13098 -12.77893 -12.40522 -11.94666 -11.77188 -11.58017 -11.37301 -11.26501 -11.16291 -10.76402 -10.64586 -10.39721 -10.29192 -9.73854 -9.45715 -8.97992 -8.76147 -8.52278 -8.37013 -6.35002 -4.02902 0.28494 0.71064 1.89407 2.79051 3.15474 3.22330 3.28719 3.61768 3.94075 4.04093 4.13553 4.40078 4.50943 4.67245 4.71129 4.85110 5.00603 5.07374 5.17518 5.22183 5.32636 5.50964 5.53185 5.71118 5.83027 5.87069 5.90334 6.05113 6.20219 6.25708 6.34831 6.43444 6.48769 6.74223 6.87585 7.45539 7.93621 8.01826 8.78271 9.13791 9.93506 10.83239 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.003251 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.470107 B = 8611.772510 C = 9099.858750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.382 4.382 8 H 0.095 0.905 9 O -0.216 6.216 10 C 0.399 3.601 11 O -0.560 6.560 12 C -0.094 4.094 13 C -0.058 4.058 14 C 0.173 3.827 15 C -0.165 4.165 16 C -0.060 4.060 17 C -0.112 4.112 18 C -0.096 4.096 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.091 4.091 22 C 0.132 3.868 23 N -0.470 5.470 24 H 0.269 0.731 25 H 0.101 0.899 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.685 -21.901 -0.330 21.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.458 4.458 8 H 0.113 0.887 9 O -0.123 6.123 10 C 0.246 3.754 11 O -0.458 6.458 12 C -0.132 4.132 13 C -0.096 4.096 14 C 0.020 3.980 15 C -0.184 4.184 16 C -0.086 4.086 17 C -0.114 4.114 18 C -0.115 4.115 19 C -0.141 4.141 20 C -0.125 4.125 21 C -0.110 4.110 22 C 0.011 3.989 23 N -0.178 5.178 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.828 -21.146 0.381 21.228 hybrid contribution 0.524 0.128 -0.693 0.878 sum -1.305 -21.018 -0.312 21.061 Atomic orbital electron populations 1.69996 1.05993 1.27566 1.46808 1.25330 0.95793 0.98845 0.96324 0.85691 0.79049 0.79881 0.78661 1.19945 1.20375 1.19126 1.21220 0.92347 0.79978 1.52289 0.88724 1.83887 1.39403 1.13421 1.75574 1.23187 0.86648 0.87324 0.78252 1.90542 1.15775 1.88231 1.51274 1.20961 0.98204 0.88961 1.05090 1.20404 0.96823 0.87333 1.04991 1.21614 0.91338 0.95987 0.89075 1.21828 1.01871 0.94416 1.00321 1.21446 0.93765 0.96776 0.96596 1.18865 0.99312 0.95930 0.97261 1.20954 0.96315 0.95475 0.98728 1.20886 0.98472 0.99592 0.95143 1.20894 0.99475 0.93313 0.98826 1.20871 0.95101 0.97391 0.97589 1.18937 0.95960 0.89501 0.94539 1.67911 1.07563 1.18655 1.23717 0.92155 0.88117 0.89384 0.89256 0.88798 0.84202 0.84421 0.85499 0.85749 0.85412 0.84575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.67 55.48 0.76 -25.24 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 3 Si 0.94 21.72 29.55 -169.99 -5.02 16.69 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.38 -11.57 9.64 30.92 0.30 -11.28 16 8 H 0.10 2.87 6.86 -52.49 -0.36 2.51 16 9 O -0.22 -6.37 9.75 -20.70 -0.20 -6.57 16 10 C 0.40 10.03 7.91 36.01 0.28 10.31 16 11 O -0.56 -15.04 15.22 -19.05 -0.29 -15.33 16 12 C -0.09 -1.78 5.66 -27.88 -0.16 -1.94 16 13 C -0.06 -0.92 4.88 -27.89 -0.14 -1.05 16 14 C 0.17 2.50 6.18 -82.50 -0.51 1.99 16 15 C -0.16 -1.91 9.62 -39.77 -0.38 -2.29 16 16 C -0.06 -0.62 9.90 -39.22 -0.39 -1.01 16 17 C -0.11 -1.31 5.74 -106.80 -0.61 -1.93 16 18 C -0.10 -0.88 9.78 -39.51 -0.39 -1.27 16 19 C -0.12 -1.03 9.95 -39.92 -0.40 -1.43 16 20 C -0.11 -0.97 9.94 -39.94 -0.40 -1.36 16 21 C -0.09 -1.07 9.98 -39.47 -0.39 -1.47 16 22 C 0.13 1.84 6.60 -84.86 -0.56 1.28 16 23 N -0.47 -7.35 9.82 -7.22 -0.07 -7.42 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.10 1.90 7.93 -51.93 -0.41 1.49 16 26 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 27 H 0.09 1.33 7.80 -51.93 -0.40 0.92 16 28 H 0.09 1.57 8.10 -51.93 -0.42 1.14 16 29 H 0.14 1.28 7.92 -52.48 -0.42 0.87 16 30 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 34 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 305.96 15.07 4.61 4.61 Total: -1.00 -35.20 305.96 -7.74 -42.93 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -3.68 Total: 0.69 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -3.84 Total: -10.37 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.69 Total: -32.66 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.49 Total: -21.90 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -35.20 -7.74 -42.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021431827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.598 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds