Wall clock time and date at job start Mon Mar 30 2020 01:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31433 * 1 3 3 Si 1.86804 * 119.99764 * 2 1 4 4 H 1.48505 * 109.46762 * 269.99823 * 3 2 1 5 5 H 1.48499 * 109.47383 * 29.99435 * 3 2 1 6 6 H 1.48497 * 109.47209 * 150.00267 * 3 2 1 7 7 C 1.38755 * 120.00228 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99884 * 180.02562 * 7 2 1 9 9 O 1.34919 * 119.99775 * 359.97438 * 7 2 1 10 10 C 1.34310 * 116.99520 * 180.02562 * 9 7 2 11 11 O 1.21213 * 120.00413 * 0.02562 * 10 9 7 12 12 C 1.50706 * 119.99894 * 180.02562 * 10 9 7 13 13 C 1.52997 * 109.47238 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47055 * 179.97438 * 13 12 10 15 15 C 1.39334 * 119.12780 * 124.99941 * 14 13 12 16 16 C 1.36576 * 119.94196 * 179.97438 * 15 14 13 17 17 C 1.40773 * 118.14582 * 359.97438 * 16 15 14 18 18 C 1.40427 * 121.37764 * 180.02562 * 17 16 15 19 19 C 1.36136 * 119.61441 * 180.02562 * 18 17 16 20 20 C 1.39358 * 120.86825 * 359.95371 * 19 18 17 21 21 C 1.36071 * 121.06685 * 0.02770 * 20 19 18 22 22 C 1.40592 * 119.74842 * 359.97438 * 21 20 19 23 23 N 1.31087 * 119.12658 * 304.73338 * 14 13 12 24 24 H 0.97006 * 120.00603 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99670 * 12 10 9 26 26 H 1.09000 * 109.47318 * 59.99268 * 12 10 9 27 27 H 1.09001 * 109.46832 * 299.99686 * 13 12 10 28 28 H 1.09004 * 109.47261 * 59.99705 * 13 12 10 29 29 H 1.08005 * 120.02656 * 359.97429 * 15 14 13 30 30 H 1.07995 * 120.92850 * 179.97438 * 16 15 14 31 31 H 1.08002 * 120.19607 * 359.95830 * 18 17 16 32 32 H 1.08001 * 119.56426 * 179.97438 * 19 18 17 33 33 H 1.08003 * 119.46667 * 180.02562 * 20 19 18 34 34 H 1.08005 * 120.12325 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0464 -1.4002 5 1 1.4457 2.6528 0.6999 6 1 3.5458 1.4403 0.7000 7 6 2.0081 -1.2016 0.0005 8 1 3.0881 -1.2016 0.0010 9 8 1.3336 -2.3701 0.0016 10 6 2.0652 -3.4964 0.0026 11 8 3.2756 -3.4330 0.0030 12 6 1.3811 -4.8393 0.0032 13 6 2.4348 -5.9485 0.0050 14 6 1.7507 -7.2912 0.0062 15 6 2.0653 -8.2136 -0.9896 16 6 1.4557 -9.4357 -1.0040 17 6 0.5171 -9.7215 0.0055 18 6 -0.1493 -10.9566 0.0558 19 6 -1.0506 -11.1947 1.0478 20 6 -1.3206 -10.2290 2.0156 21 6 -0.6929 -9.0219 1.9972 22 6 0.2446 -8.7383 0.9885 23 7 0.8793 -7.5625 0.9472 24 1 -0.4851 0.8400 -0.0004 25 1 0.7580 -4.9292 0.8931 26 1 0.7585 -4.9303 -0.8869 27 1 3.0582 -5.8588 -0.8847 28 1 3.0570 -5.8572 0.8954 29 1 2.7906 -7.9623 -1.7494 30 1 1.6872 -10.1624 -1.7686 31 1 0.0513 -11.7128 -0.6888 32 1 -1.5630 -12.1447 1.0855 33 1 -2.0396 -10.4421 2.7927 34 1 -0.9134 -8.2847 2.7550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021431827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:45 Heat of formation + Delta-G solvation = -57.711229 kcal Electronic energy + Delta-G solvation = -18953.180157 eV Core-core repulsion = 15814.993704 eV Total energy + Delta-G solvation = -3138.186453 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.82848 -41.00429 -38.45524 -37.33878 -34.67713 -34.32323 -34.17907 -31.14984 -30.71741 -27.96382 -26.41451 -24.63191 -23.31748 -22.94793 -21.45833 -19.89412 -19.14946 -18.47498 -18.13270 -17.14999 -16.93116 -16.53607 -16.22171 -15.64819 -15.46480 -15.30550 -14.87584 -14.53614 -14.44912 -13.96153 -13.77338 -13.46735 -13.26234 -13.07381 -12.55994 -12.46520 -12.35627 -12.22103 -12.15405 -12.05061 -11.98314 -11.51509 -11.06045 -10.70585 -10.41362 -9.63915 -9.18835 -8.54296 -6.34900 -0.52765 -0.14542 1.07294 1.30423 1.33729 1.51790 1.64088 1.95928 2.13097 2.72701 2.96728 3.14044 3.21342 3.66644 3.75832 3.87365 4.01121 4.04587 4.14912 4.28097 4.31546 4.47504 4.53186 4.59150 4.81597 4.83245 4.95286 5.02235 5.06212 5.14711 5.16800 5.21886 5.45612 5.51737 5.63839 5.82772 5.96975 6.64974 6.90431 6.98260 7.76567 8.66813 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.003251 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.470107 B = 8611.772510 C = 9099.858750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.007 4.007 3 Si 1.020 2.980 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.263 1.263 7 C -0.423 4.423 8 H 0.084 0.916 9 O -0.249 6.249 10 C 0.398 3.602 11 O -0.579 6.579 12 C -0.080 4.080 13 C -0.047 4.047 14 C 0.154 3.846 15 C -0.176 4.176 16 C -0.047 4.047 17 C -0.127 4.127 18 C -0.094 4.094 19 C -0.121 4.121 20 C -0.093 4.093 21 C -0.125 4.125 22 C 0.100 3.900 23 N -0.508 5.508 24 H 0.279 0.721 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.163 0.837 30 H 0.179 0.821 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.913 -23.995 -1.317 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.207 4.207 3 Si 0.838 3.162 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.101 0.899 9 O -0.157 6.157 10 C 0.246 3.754 11 O -0.477 6.477 12 C -0.118 4.118 13 C -0.085 4.085 14 C 0.002 3.998 15 C -0.195 4.195 16 C -0.073 4.073 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.139 4.139 20 C -0.112 4.112 21 C -0.144 4.144 22 C -0.021 4.021 23 N -0.217 5.217 24 H 0.088 0.912 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.118 0.882 28 H 0.096 0.904 29 H 0.181 0.819 30 H 0.197 0.803 31 H 0.180 0.820 32 H 0.178 0.822 33 H 0.172 0.828 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.062 -23.269 -0.605 23.368 hybrid contribution 0.508 0.566 -0.336 0.832 sum -1.554 -22.702 -0.941 22.775 Atomic orbital electron populations 1.70087 1.07768 1.29396 1.47025 1.26606 0.96906 1.02514 0.94645 0.84599 0.77637 0.74325 0.79608 1.18260 1.18433 1.18716 1.21469 0.92243 0.81219 1.54952 0.89869 1.83912 1.40566 1.14409 1.76832 1.24355 0.86708 0.88197 0.76098 1.90505 1.16874 1.88675 1.51672 1.21012 0.98875 0.86276 1.05621 1.20267 0.95899 0.87534 1.04769 1.21419 0.92144 0.95746 0.90517 1.21997 1.02829 0.94548 1.00140 1.21906 0.92078 0.96757 0.96537 1.19217 1.00032 0.96576 0.97089 1.21381 0.95442 0.94906 0.99498 1.21355 0.97901 1.00549 0.94058 1.21282 0.98508 0.92164 0.99283 1.20997 0.96520 0.98854 0.97986 1.19311 0.96843 0.89767 0.96181 1.67777 1.08714 1.20403 1.24825 0.91193 0.88286 0.87824 0.88211 0.90362 0.81921 0.80348 0.82038 0.82155 0.82770 0.85518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.27 13.67 21.62 0.30 -54.97 16 2 C -0.01 -0.40 5.49 84.88 0.47 0.06 16 3 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.42 -26.58 9.64 67.94 0.66 -25.93 16 8 H 0.08 5.25 6.86 -2.91 -0.02 5.23 16 9 O -0.25 -15.36 9.75 14.89 0.15 -15.22 16 10 C 0.40 20.89 7.91 71.24 0.56 21.45 16 11 O -0.58 -32.29 15.22 20.76 0.32 -31.97 16 12 C -0.08 -3.15 5.66 29.85 0.17 -2.98 16 13 C -0.05 -1.54 4.88 29.85 0.15 -1.40 16 14 C 0.15 4.54 6.18 42.93 0.27 4.81 16 15 C -0.18 -3.85 9.62 22.14 0.21 -3.64 16 16 C -0.05 -0.86 9.90 22.50 0.22 -0.63 16 17 C -0.13 -2.75 5.74 -21.28 -0.12 -2.87 16 18 C -0.09 -1.37 9.78 22.31 0.22 -1.15 16 19 C -0.12 -1.58 9.95 22.05 0.22 -1.36 16 20 C -0.09 -1.52 9.94 22.04 0.22 -1.30 16 21 C -0.12 -2.99 9.98 22.34 0.22 -2.76 16 22 C 0.10 2.81 6.60 40.29 0.27 3.08 16 23 N -0.51 -16.54 9.82 -176.76 -1.74 -18.28 16 24 H 0.28 15.37 8.31 -92.70 -0.77 14.60 16 25 H 0.10 3.96 7.93 -2.39 -0.02 3.94 16 26 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 27 H 0.10 3.01 7.80 -2.39 -0.02 2.99 16 28 H 0.08 2.77 8.10 -2.38 -0.02 2.75 16 29 H 0.16 2.66 7.92 -2.91 -0.02 2.64 16 30 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 31 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -80.31 305.96 5.89 -74.43 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 1.11 Total: 14.08 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 3.72 Total: -14.64 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.44 Total: -73.25 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: 0.46 Total: -47.19 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -80.31 5.89 -74.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021431827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.716 kcal (2) G-P(sol) polarization free energy of solvation -80.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds