Wall clock time and date at job start Mon Mar 30 2020 01:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30305 * 126.34163 * 2 1 4 4 N 1.28524 * 110.07735 * 179.97438 * 3 2 1 5 5 C 1.31279 * 109.86182 * 0.02562 * 4 3 2 6 6 S 1.76192 * 126.48644 * 180.02562 * 5 4 3 7 7 C 1.81001 * 100.00087 * 359.97375 * 6 5 4 8 8 C 1.50696 * 109.47158 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00242 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99927 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99933 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47125 * 179.97438 * 11 10 8 13 13 H 1.07994 * 119.99974 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99916 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00258 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99668 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47358 * 59.99879 * 16 14 12 18 18 H 1.48504 * 109.47159 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47271 * 299.99977 * 16 14 12 20 20 N 1.36542 * 107.03065 * 359.97438 * 5 4 3 21 21 N 1.36599 * 127.14525 * 180.02562 * 20 5 4 22 22 H 1.08994 * 109.46858 * 90.02796 * 1 2 3 23 23 H 1.09001 * 109.46950 * 210.02557 * 1 2 3 24 24 H 1.08998 * 109.46965 * 330.02675 * 1 2 3 25 25 H 1.09000 * 109.46608 * 299.99574 * 7 6 5 26 26 H 1.08995 * 109.46795 * 60.00035 * 7 6 5 27 27 H 0.97001 * 119.99781 * 359.97438 * 10 8 7 28 28 H 1.09000 * 109.47577 * 300.00017 * 11 10 8 29 29 H 1.09000 * 109.47284 * 59.99828 * 11 10 8 30 30 H 0.97001 * 120.00243 * 179.97438 * 15 14 12 31 31 H 1.00900 * 111.00328 * 89.97471 * 21 20 5 32 32 H 1.00903 * 110.99821 * 213.93114 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2792 1.0496 0.0000 4 7 3.5130 0.6896 0.0005 5 6 3.5954 -0.6206 0.0004 6 16 5.0749 -1.5773 0.0016 7 6 6.3068 -0.2512 0.0021 8 6 7.6896 -0.8501 0.0026 9 8 7.8287 -2.0549 0.0030 10 7 8.7719 -0.0468 0.0036 11 6 10.1162 -0.6291 0.0045 12 6 11.1418 0.4751 0.0049 13 1 10.8241 1.5072 0.0049 14 6 12.4859 0.1675 0.0064 15 7 12.8728 -1.0894 0.0079 16 14 13.7571 1.5361 0.0075 17 1 13.5799 2.3754 1.2197 18 1 15.1199 0.9460 0.0084 19 1 13.5824 2.3751 -1.2052 20 7 2.3175 -1.1016 0.0002 21 7 1.9291 -2.4112 0.0005 22 1 -0.3633 -0.0005 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 6.1782 0.3645 -0.8881 26 1 6.1769 0.3648 0.8919 27 1 8.6606 0.9168 0.0036 28 1 10.2447 -1.2451 0.8945 29 1 10.2461 -1.2449 -0.8854 30 1 13.8184 -1.3058 0.0086 31 1 1.8265 -2.7578 0.9426 32 1 1.0771 -2.5358 -0.5254 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024767064.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:58 Heat of formation + Delta-G solvation = 33.303969 kcal Electronic energy + Delta-G solvation = -17447.193177 eV Core-core repulsion = 14377.149799 eV Total energy + Delta-G solvation = -3070.043379 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.09234 -40.56189 -37.58035 -36.21805 -34.41896 -33.52497 -31.61079 -30.85466 -29.02725 -28.48550 -24.70519 -23.95185 -22.66844 -21.65703 -19.82699 -18.85380 -18.54206 -18.03052 -17.58330 -17.07265 -16.76264 -16.27101 -16.08808 -15.47237 -14.94585 -14.63630 -14.40865 -13.99647 -13.98397 -13.61281 -13.48615 -13.19144 -12.91498 -12.67641 -12.42229 -12.24011 -11.98311 -11.51643 -11.43357 -11.06947 -11.05551 -10.79785 -10.57307 -9.92043 -8.73584 -8.28636 -6.44911 -0.16372 0.43443 0.88610 1.14025 1.44614 1.48086 1.54066 1.55110 1.56290 2.29112 2.49403 3.06487 3.12237 3.52617 3.73186 3.98233 4.04572 4.28525 4.31136 4.53099 4.57570 4.79449 5.04198 5.09133 5.24090 5.43053 5.62730 5.67091 5.83489 6.36908 6.63658 6.74241 7.20090 7.34703 7.39351 8.83208 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.050800 B = 0.003130 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.044309 B = 8943.047446 C = 9464.461002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.160 3.840 3 N -0.318 5.318 4 N -0.321 5.321 5 C 0.159 3.841 6 S 0.096 5.904 7 C -0.138 4.138 8 C 0.519 3.481 9 O -0.583 6.583 10 N -0.697 5.697 11 C 0.266 3.734 12 C -0.558 4.558 13 H 0.084 0.916 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.983 3.017 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.263 1.263 20 N -0.308 5.308 21 N -0.585 5.585 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.106 0.894 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.412 0.588 28 H -0.006 1.006 29 H -0.006 1.006 30 H 0.269 0.731 31 H 0.381 0.619 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.047 0.882 0.714 27.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 N -0.159 5.159 4 N -0.166 5.166 5 C -0.217 4.217 6 S 0.323 5.677 7 C -0.290 4.290 8 C 0.304 3.696 9 O -0.464 6.464 10 N -0.346 5.346 11 C 0.144 3.856 12 C -0.596 4.596 13 H 0.102 0.898 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.806 3.194 17 H -0.187 1.187 18 H -0.211 1.211 19 H -0.188 1.188 20 N -0.090 5.090 21 N -0.221 5.221 22 H 0.126 0.874 23 H 0.124 0.876 24 H 0.124 0.876 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.248 0.752 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.078 0.922 31 H 0.201 0.799 32 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -25.532 0.049 0.356 25.535 hybrid contribution -0.468 0.893 0.455 1.106 sum -26.001 0.942 0.811 26.031 Atomic orbital electron populations 1.20534 0.79384 1.06515 1.06038 1.26511 0.98939 0.82168 1.03543 1.73868 0.96691 1.25297 1.19997 1.74730 1.12830 1.06780 1.22258 1.27114 0.91804 0.95067 1.07715 1.86529 0.86229 1.02760 1.92147 1.23659 0.92519 1.02095 1.10733 1.20109 0.86288 0.86741 0.76499 1.90690 1.87231 1.16082 1.52433 1.46088 1.05948 1.10663 1.71934 1.18638 0.78160 0.94138 0.94703 1.21587 0.91348 0.93572 1.53117 0.89809 1.26022 1.01039 0.98496 0.93842 1.70116 1.17222 1.19621 1.49817 0.85231 0.76623 0.78064 0.79461 1.18732 1.21058 1.18760 1.45025 1.04266 1.03693 1.55995 1.59630 1.44204 0.94973 1.23332 0.87366 0.87649 0.87565 0.84374 0.84277 0.75200 0.98766 0.98806 0.92190 0.79885 0.78468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.41 10.18 71.24 0.73 0.32 16 2 C 0.16 3.01 8.13 137.63 1.12 4.13 16 3 N -0.32 -8.85 12.18 -49.52 -0.60 -9.45 16 4 N -0.32 -9.82 11.60 -56.86 -0.66 -10.48 16 5 C 0.16 4.31 8.20 179.55 1.47 5.78 16 6 S 0.10 2.80 21.40 -56.49 -1.21 1.59 16 7 C -0.14 -4.10 5.72 71.23 0.41 -3.70 16 8 C 0.52 20.70 7.85 87.66 0.69 21.39 16 9 O -0.58 -28.15 15.86 -3.03 -0.05 -28.20 16 10 N -0.70 -29.27 5.55 -466.80 -2.59 -31.86 16 11 C 0.27 14.45 5.43 85.63 0.46 14.91 16 12 C -0.56 -30.23 9.28 25.60 0.24 -29.99 16 13 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 14 C 0.01 0.33 5.46 84.66 0.46 0.79 16 15 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 16 Si 0.98 42.36 29.54 68.60 2.03 44.39 16 17 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 18 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 20 N -0.31 -6.03 3.81 -185.32 -0.71 -6.73 16 21 N -0.58 -6.47 10.41 37.02 0.39 -6.09 16 22 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 23 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 24 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.14 3.67 8.14 -2.40 -0.02 3.65 16 26 H 0.14 3.64 8.14 -2.40 -0.02 3.62 16 27 H 0.41 14.35 8.32 -92.71 -0.77 13.58 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H -0.01 -0.37 8.14 -2.39 -0.02 -0.38 16 30 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 31 H 0.38 2.54 9.21 -210.56 -1.94 0.60 16 32 H 0.39 1.46 8.85 -210.55 -1.86 -0.40 16 Total: -1.00 -79.72 304.46 -0.92 -80.64 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -3.38 Total: 8.05 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 5.58 Total: 13.62 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -3.89 Total: -120.10 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.05 Total: -28.20 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.21 Total: 1.59 kcal Total: -79.72 -0.92 -80.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024767064.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.945 kcal (2) G-P(sol) polarization free energy of solvation -79.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds