Wall clock time and date at job start Mon Mar 30 2020 01:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47297 * 2 1 4 4 N 1.40584 * 127.38793 * 270.14063 * 3 2 1 5 5 N 1.28902 * 106.83438 * 180.28535 * 4 3 2 6 6 N 1.28428 * 110.34129 * 359.74743 * 5 4 3 7 7 C 1.31540 * 110.49894 * 0.02562 * 6 5 4 8 8 S 1.76193 * 126.45243 * 180.02562 * 7 6 5 9 9 C 1.81002 * 100.00049 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.47156 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46835 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00280 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99711 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00219 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46794 * 90.00022 * 18 16 14 20 20 H 1.48505 * 109.46876 * 210.00288 * 18 16 14 21 21 H 1.48501 * 109.46982 * 330.00118 * 18 16 14 22 22 H 1.08994 * 109.47280 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46500 * 299.99971 * 1 2 3 24 24 H 1.08998 * 109.47201 * 59.99375 * 1 2 3 25 25 H 1.09007 * 109.46866 * 240.00376 * 2 1 3 26 26 H 1.08998 * 109.47201 * 120.00625 * 2 1 3 27 27 H 1.09002 * 109.47115 * 60.00094 * 9 8 7 28 28 H 1.09001 * 109.46925 * 300.00251 * 9 8 7 29 29 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 30 30 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 31 31 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 32 32 H 0.97009 * 119.99937 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3004 2.1869 -1.1170 5 7 2.7096 3.3224 -0.6645 6 7 2.7096 3.3174 0.6198 7 6 2.2930 2.1560 1.0759 8 16 2.1287 1.6938 2.7682 9 6 2.6777 3.2228 3.5663 10 6 2.6201 3.0568 5.0631 11 8 2.2453 2.0079 5.5429 12 7 2.9862 4.0737 5.8684 13 6 2.9307 3.9121 7.3233 14 6 3.3877 5.1852 7.9879 15 1 3.6889 6.0302 7.3866 16 6 3.4213 5.2711 9.3636 17 7 3.8206 6.3819 9.9435 18 14 2.9011 3.8092 10.4037 19 1 4.0817 2.9508 10.6765 20 1 2.3331 4.2926 11.6879 21 1 1.8750 3.0224 9.6736 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.0263 4.0436 3.2661 28 1 3.7018 3.4427 3.2646 29 1 3.2863 4.9124 5.4846 30 1 1.9069 3.6921 7.6258 31 1 3.5824 3.0913 7.6229 32 1 3.8439 6.4425 10.9114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030970896.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:13 Heat of formation + Delta-G solvation = 76.259119 kcal Electronic energy + Delta-G solvation = -17552.940889 eV Core-core repulsion = 14484.760185 eV Total energy + Delta-G solvation = -3068.180704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.05837 -39.18002 -36.21277 -34.54337 -32.59099 -32.40445 -31.29066 -30.42198 -27.53904 -25.54899 -23.49857 -22.86306 -22.18699 -20.26654 -18.55282 -17.35979 -17.12549 -16.68411 -16.14148 -15.70823 -15.46983 -15.21757 -14.38378 -14.15336 -13.84719 -13.36653 -13.31954 -13.09743 -12.97298 -12.46703 -12.39095 -12.11356 -11.81224 -11.40603 -11.23410 -11.12141 -10.90862 -10.84734 -10.73022 -10.05931 -9.69131 -9.56786 -8.87691 -8.41727 -8.19033 -6.28078 -4.31725 0.45458 0.64671 1.56413 1.80920 2.00947 2.84647 3.21422 3.28507 3.35090 3.65411 3.86437 4.26546 4.32748 4.43514 4.61609 4.84630 4.90597 4.97927 5.00176 5.06977 5.12746 5.26202 5.34042 5.54305 5.77826 6.63800 6.93330 6.96283 7.25114 7.92713 8.19207 8.33534 8.53249 8.72387 9.30328 10.83675 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.041209 B = 0.003476 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.298016 B = 8053.110570 C = 8627.377102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.115 3.885 3 N -0.363 5.363 4 N -0.087 5.087 5 N -0.033 5.033 6 N -0.337 5.337 7 C 0.200 3.800 8 S 0.115 5.885 9 C -0.151 4.151 10 C 0.519 3.481 11 O -0.546 6.546 12 N -0.691 5.691 13 C 0.221 3.779 14 C -0.548 4.548 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.889 5.889 18 Si 0.877 3.123 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.261 1.261 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.110 0.890 26 H 0.109 0.891 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.402 0.598 30 H 0.029 0.971 31 H 0.025 0.975 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 -12.769 -17.966 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.006 4.006 3 N -0.163 5.163 4 N -0.074 5.074 5 N -0.029 5.029 6 N -0.194 5.194 7 C -0.184 4.184 8 S 0.339 5.661 9 C -0.303 4.303 10 C 0.301 3.699 11 O -0.426 6.426 12 N -0.339 5.339 13 C 0.099 3.901 14 C -0.586 4.586 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.526 5.526 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.185 1.185 22 H 0.107 0.893 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.236 0.764 30 H 0.047 0.953 31 H 0.042 0.958 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.466 -13.509 -17.979 23.144 hybrid contribution 0.138 0.266 0.339 0.452 sum -5.328 -13.244 -17.640 22.693 Atomic orbital electron populations 1.22205 0.92692 1.04258 1.03959 1.22130 0.96559 0.75835 1.06091 1.51686 1.47365 1.14233 1.03008 1.82431 1.19315 0.98085 1.07608 1.77839 1.09653 1.12493 1.02923 1.74964 1.23572 1.17545 1.03345 1.28346 0.99284 0.91206 0.99559 1.86452 1.80768 1.17210 0.81670 1.23955 1.08720 1.00238 0.97427 1.19436 0.79049 0.85027 0.86356 1.90710 1.48389 1.27299 1.76204 1.46101 1.63968 1.15078 1.08785 1.19600 0.97428 0.98232 0.74864 1.21058 1.46702 0.98406 0.92407 0.90065 1.24792 0.94039 0.96076 0.97630 1.69876 1.45974 1.26146 1.10627 0.86821 0.79918 0.82860 0.80114 1.19777 1.20810 1.18487 0.89275 0.91045 0.91288 0.87142 0.87334 0.85302 0.85316 0.76370 0.95298 0.95750 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 10.24 37.16 0.38 -0.53 16 2 C 0.12 0.71 7.09 -4.04 -0.03 0.68 16 3 N -0.36 -3.89 3.69 -61.30 -0.23 -4.12 16 4 N -0.09 -1.15 13.93 60.35 0.84 -0.31 16 5 N -0.03 -0.50 13.38 60.35 0.81 0.31 16 6 N -0.34 -4.82 11.57 30.50 0.35 -4.47 16 7 C 0.20 2.43 8.15 -89.17 -0.73 1.70 16 8 S 0.11 1.32 20.92 -107.50 -2.25 -0.93 16 9 C -0.15 -1.87 5.72 36.01 0.21 -1.66 16 10 C 0.52 8.75 7.85 -10.98 -0.09 8.66 16 11 O -0.55 -10.97 15.86 5.56 0.09 -10.88 16 12 N -0.69 -12.75 5.55 -61.47 -0.34 -13.09 16 13 C 0.22 5.09 4.50 -5.19 -0.02 5.06 16 14 C -0.55 -14.41 9.83 -34.44 -0.34 -14.75 16 15 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.89 -25.77 13.96 55.43 0.77 -25.00 16 18 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 22 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.11 0.52 7.85 -51.93 -0.41 0.11 16 27 H 0.13 1.42 8.14 -51.92 -0.42 0.99 16 28 H 0.13 1.41 8.14 -51.92 -0.42 0.99 16 29 H 0.40 6.47 8.32 -40.82 -0.34 6.13 16 30 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 31 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 32 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -32.64 301.87 -4.42 -37.06 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.63 Total: -0.30 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -0.71 Total: 1.23 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 2.21 Total: -46.67 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.25 Total: -0.93 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.64 -4.42 -37.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030970896.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.314 kcal (2) G-P(sol) polarization free energy of solvation -32.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds