Wall clock time and date at job start Mon Mar 30 2020 01:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47297 * 2 1 4 4 N 1.40584 * 127.38793 * 270.14063 * 3 2 1 5 5 N 1.28902 * 106.83438 * 180.28535 * 4 3 2 6 6 N 1.28428 * 110.34129 * 359.74743 * 5 4 3 7 7 C 1.31540 * 110.49894 * 0.02562 * 6 5 4 8 8 S 1.76193 * 126.45243 * 180.02562 * 7 6 5 9 9 C 1.81002 * 100.00049 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.47156 * 180.02562 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.46835 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00280 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99788 * 180.02562 * 14 13 12 17 17 N 1.31512 * 119.99711 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00219 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46794 * 90.00022 * 18 16 14 20 20 H 1.48505 * 109.46876 * 210.00288 * 18 16 14 21 21 H 1.48501 * 109.46982 * 330.00118 * 18 16 14 22 22 H 1.08994 * 109.47280 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46500 * 299.99971 * 1 2 3 24 24 H 1.08998 * 109.47201 * 59.99375 * 1 2 3 25 25 H 1.09007 * 109.46866 * 240.00376 * 2 1 3 26 26 H 1.08998 * 109.47201 * 120.00625 * 2 1 3 27 27 H 1.09002 * 109.47115 * 60.00094 * 9 8 7 28 28 H 1.09001 * 109.46925 * 300.00251 * 9 8 7 29 29 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 30 30 H 1.09001 * 109.47487 * 300.00114 * 13 12 10 31 31 H 1.09002 * 109.47182 * 60.00342 * 13 12 10 32 32 H 0.97009 * 119.99937 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3004 2.1869 -1.1170 5 7 2.7096 3.3224 -0.6645 6 7 2.7096 3.3174 0.6198 7 6 2.2930 2.1560 1.0759 8 16 2.1287 1.6938 2.7682 9 6 2.6777 3.2228 3.5663 10 6 2.6201 3.0568 5.0631 11 8 2.2453 2.0079 5.5429 12 7 2.9862 4.0737 5.8684 13 6 2.9307 3.9121 7.3233 14 6 3.3877 5.1852 7.9879 15 1 3.6889 6.0302 7.3866 16 6 3.4213 5.2711 9.3636 17 7 3.8206 6.3819 9.9435 18 14 2.9011 3.8092 10.4037 19 1 4.0817 2.9508 10.6765 20 1 2.3331 4.2926 11.6879 21 1 1.8750 3.0224 9.6736 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.0263 4.0436 3.2661 28 1 3.7018 3.4427 3.2646 29 1 3.2863 4.9124 5.4846 30 1 1.9069 3.6921 7.6258 31 1 3.5824 3.0913 7.6229 32 1 3.8439 6.4425 10.9114 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000030970896.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:13 Heat of formation + Delta-G solvation = 51.838066 kcal Electronic energy + Delta-G solvation = -17553.999865 eV Core-core repulsion = 14484.760185 eV Total energy + Delta-G solvation = -3069.239680 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.01109 -40.63778 -36.93872 -36.24485 -34.46166 -33.45640 -31.94645 -31.75625 -29.26970 -26.31312 -24.44809 -24.21566 -23.43739 -21.73521 -19.65025 -18.89058 -18.07213 -17.68410 -17.58955 -17.24694 -16.77102 -16.04816 -15.80304 -15.36591 -14.81341 -14.76578 -14.46386 -14.34805 -14.04614 -13.79367 -13.65428 -13.10069 -12.99477 -12.68224 -12.41532 -12.26273 -12.11655 -11.92043 -11.87004 -11.65093 -11.57133 -11.14645 -10.90677 -10.03910 -9.12429 -8.37960 -6.45825 -0.49098 -0.27245 0.58631 1.00050 1.05607 1.36017 1.38718 1.48502 1.50877 2.28826 2.31831 2.97773 3.12301 3.60572 3.70098 3.87736 3.94179 4.10065 4.18867 4.21604 4.28930 4.59149 4.76974 4.83552 5.03845 5.09729 5.14790 5.25649 5.40709 6.05647 6.54501 6.68819 7.10176 7.21038 7.26107 8.76766 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.041209 B = 0.003476 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.298016 B = 8053.110570 C = 8627.377102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 N -0.351 5.351 4 N -0.095 5.095 5 N -0.060 5.060 6 N -0.357 5.357 7 C 0.197 3.803 8 S 0.139 5.861 9 C -0.148 4.148 10 C 0.525 3.475 11 O -0.577 6.577 12 N -0.694 5.694 13 C 0.231 3.769 14 C -0.549 4.549 15 H 0.059 0.941 16 C 0.025 3.975 17 N -0.933 5.933 18 Si 0.939 3.061 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.254 1.254 22 H 0.117 0.883 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.132 0.868 26 H 0.127 0.873 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.413 0.587 30 H 0.021 0.979 31 H 0.019 0.981 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 -14.801 -18.692 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.151 5.151 4 N -0.082 5.082 5 N -0.055 5.055 6 N -0.214 5.214 7 C -0.188 4.188 8 S 0.363 5.637 9 C -0.299 4.299 10 C 0.309 3.691 11 O -0.458 6.458 12 N -0.343 5.343 13 C 0.108 3.892 14 C -0.587 4.587 15 H 0.077 0.923 16 C -0.176 4.176 17 N -0.572 5.572 18 Si 0.762 3.238 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.178 1.178 22 H 0.136 0.864 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.150 0.850 26 H 0.145 0.855 27 H 0.165 0.835 28 H 0.165 0.835 29 H 0.249 0.751 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.097 -15.553 -18.746 25.110 hybrid contribution 0.309 0.845 0.487 1.024 sum -5.787 -14.708 -18.259 24.150 Atomic orbital electron populations 1.22211 0.91801 1.05783 1.02902 1.22665 0.97278 0.73767 1.08077 1.52002 1.46050 1.15160 1.01926 1.82343 1.19190 0.98083 1.08601 1.77824 1.10963 1.13415 1.03338 1.74868 1.24373 1.18805 1.03382 1.28370 0.99319 0.91063 1.00029 1.86424 1.80595 1.15891 0.80786 1.23842 1.10502 1.01732 0.93864 1.19943 0.77401 0.83766 0.87956 1.90696 1.49413 1.28379 1.77328 1.45907 1.64777 1.16355 1.07290 1.19197 0.96423 0.96152 0.77450 1.21304 1.45804 0.99030 0.92554 0.92286 1.25635 0.94191 0.98624 0.99118 1.69993 1.47734 1.28287 1.11157 0.85838 0.79838 0.79604 0.78514 1.18974 1.20219 1.17821 0.86447 0.92132 0.92256 0.85024 0.85530 0.83540 0.83513 0.75074 0.96151 0.96260 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 71.98 0.74 -0.62 16 2 C 0.10 0.98 7.09 86.38 0.61 1.59 16 3 N -0.35 -6.86 3.69 -347.86 -1.28 -8.14 16 4 N -0.09 -2.38 13.93 37.02 0.52 -1.87 16 5 N -0.06 -1.74 13.38 37.02 0.50 -1.24 16 6 N -0.36 -9.74 11.57 -57.41 -0.66 -10.40 16 7 C 0.20 4.40 8.15 179.84 1.47 5.87 16 8 S 0.14 2.87 20.92 -56.49 -1.18 1.69 16 9 C -0.15 -3.33 5.72 71.24 0.41 -2.93 16 10 C 0.52 16.80 7.85 87.66 0.69 17.49 16 11 O -0.58 -22.22 15.86 -3.03 -0.05 -22.27 16 12 N -0.69 -24.87 5.55 -466.78 -2.59 -27.46 16 13 C 0.23 10.50 4.50 85.63 0.38 10.88 16 14 C -0.55 -29.02 9.83 25.60 0.25 -28.76 16 15 H 0.06 3.30 7.84 -2.91 -0.02 3.28 16 16 C 0.02 1.35 5.47 84.66 0.46 1.81 16 17 N -0.93 -54.70 13.96 21.45 0.30 -54.40 16 18 Si 0.94 42.18 27.47 68.60 1.88 44.06 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 22 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 23 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.13 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.13 0.81 7.85 -2.39 -0.02 0.79 16 27 H 0.15 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.15 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.41 12.93 8.32 -92.71 -0.77 12.16 16 30 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 31 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 32 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 Total: -1.00 -70.01 301.87 2.77 -67.24 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 0.33 Total: 7.45 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 5.01 Total: 5.33 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -3.23 Total: -103.51 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.88 Total: 44.06 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.18 Total: 1.69 kcal Total: -70.01 2.77 -67.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030970896.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.079 kcal (2) G-P(sol) polarization free energy of solvation -70.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds