Wall clock time and date at job start Mon Mar 30 2020 01:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 120.00352 * 2 1 4 4 C 1.50700 * 109.47212 * 270.00005 * 3 2 1 5 5 H 1.07999 * 119.99752 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00202 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99568 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99968 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47013 * 60.00505 * 8 6 4 10 10 H 1.48503 * 109.47021 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47718 * 300.00216 * 8 6 4 12 12 C 1.34776 * 119.99801 * 179.97438 * 2 1 3 13 13 O 1.21282 * 119.99940 * 179.97438 * 12 2 1 14 14 C 1.50698 * 120.00035 * 0.02562 * 12 2 1 15 15 C 1.53006 * 109.47184 * 179.97438 * 14 12 2 16 16 N 1.46504 * 109.46883 * 179.97438 * 15 14 12 17 17 C 1.35048 * 126.03754 * 125.00366 * 16 15 14 18 18 C 1.35371 * 107.72804 * 179.97438 * 17 16 15 19 19 Cl 1.73596 * 126.04419 * 179.97438 * 18 17 16 20 20 C 1.39921 * 107.90854 * 359.97438 * 18 17 16 21 21 N 1.30859 * 108.21521 * 359.75849 * 20 18 17 22 22 H 1.08996 * 109.47300 * 270.00198 * 1 2 3 23 23 H 1.09010 * 109.46976 * 30.00342 * 1 2 3 24 24 H 1.09007 * 109.47283 * 149.99894 * 1 2 3 25 25 H 1.09004 * 109.46870 * 29.99582 * 3 2 1 26 26 H 1.08996 * 109.47490 * 149.99890 * 3 2 1 27 27 H 0.97001 * 119.99819 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47612 * 59.99945 * 14 12 2 29 29 H 1.09001 * 109.47122 * 299.99777 * 14 12 2 30 30 H 1.09001 * 109.47002 * 299.99404 * 15 14 12 31 31 H 1.08993 * 109.46955 * 59.99842 * 15 14 12 32 32 H 1.07999 * 126.12993 * 359.93388 * 17 16 15 33 33 H 1.08003 * 125.89521 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5526 3.6185 -0.6731 8 14 3.4381 3.4167 -3.4339 9 1 2.1408 3.5936 -4.1346 10 1 4.1806 4.7028 -3.4339 11 1 4.2414 2.3820 -4.1333 12 6 2.1388 -1.1672 0.0005 13 8 3.3516 -1.1672 0.0001 14 6 1.3853 -2.4723 0.0005 15 6 2.3795 -3.6353 0.0005 16 7 1.6469 -4.9040 0.0011 17 6 1.7918 -5.9055 -0.8931 18 6 0.9383 -6.8966 -0.5439 19 17 0.7349 -8.4086 -1.3723 20 6 0.2493 -6.4868 0.6029 21 7 0.6772 -5.2952 0.9333 22 1 -0.3634 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3634 -0.8900 -0.5139 25 1 1.6084 2.0283 0.5138 26 1 3.1499 1.1383 0.5138 27 1 4.0295 4.4443 -0.8503 28 1 0.7589 -2.5303 -0.8897 29 1 0.7583 -2.5298 0.8903 30 1 3.0061 -3.5776 -0.8895 31 1 3.0061 -3.5775 0.8904 32 1 2.4669 -5.9139 -1.7361 33 1 -0.5027 -7.0575 1.1276 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038053489.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:21 Heat of formation + Delta-G solvation = 14.149019 kcal Electronic energy + Delta-G solvation = -17891.663252 eV Core-core repulsion = 14786.452795 eV Total energy + Delta-G solvation = -3105.210457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.27530 -40.69911 -37.36502 -36.71189 -35.30863 -34.68677 -31.77966 -30.66452 -29.47449 -27.38823 -26.06315 -24.21071 -22.20263 -21.83126 -20.00581 -18.74496 -18.63242 -17.41768 -17.24961 -16.90917 -16.29513 -16.02452 -15.50670 -15.17979 -14.80652 -14.31407 -14.20942 -13.96875 -13.69637 -13.53218 -13.47189 -13.10647 -12.81157 -12.71503 -12.53239 -12.40826 -12.25075 -12.20124 -11.73537 -11.43633 -10.76241 -10.64946 -10.57736 -9.47054 -9.41788 -8.23347 -6.38549 0.74035 0.94637 1.37521 1.41262 1.48717 1.61120 1.74174 1.78197 2.30640 2.45162 3.06587 3.46150 3.61173 3.83145 3.88455 4.03446 4.25125 4.38916 4.45091 4.61150 4.66318 4.73014 4.78419 4.93278 4.99584 5.21241 5.39749 5.53193 5.79730 5.80151 6.03989 6.53199 6.65703 6.73901 7.24987 7.40368 8.83744 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033308 B = 0.003335 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.432544 B = 8393.394337 C = 8772.894038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.608 5.608 3 C 0.258 3.742 4 C -0.545 4.545 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.502 3.498 13 O -0.593 6.593 14 C -0.129 4.129 15 C 0.156 3.844 16 N -0.366 5.366 17 C 0.078 3.922 18 C -0.202 4.202 19 Cl -0.040 7.040 20 C 0.064 3.936 21 N -0.311 5.311 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.023 0.977 26 H 0.001 0.999 27 H 0.267 0.733 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.208 0.792 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.057 -20.331 -0.754 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.339 5.339 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.074 0.926 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.792 3.208 9 H -0.185 1.185 10 H -0.205 1.205 11 H -0.201 1.201 12 C 0.290 3.710 13 O -0.475 6.475 14 C -0.170 4.170 15 C 0.035 3.965 16 N -0.148 5.148 17 C -0.070 4.070 18 C -0.241 4.241 19 Cl -0.012 7.012 20 C -0.122 4.122 21 N -0.132 5.132 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.041 0.959 26 H 0.019 0.981 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.224 0.776 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.410 -19.145 0.066 20.911 hybrid contribution 0.495 -0.034 -1.231 1.327 sum -7.915 -19.179 -1.165 20.781 Atomic orbital electron populations 1.21936 0.77895 1.03993 1.02594 1.48165 1.08421 1.06486 1.70834 1.18784 0.91160 0.80241 0.96146 1.21683 1.36998 1.06650 0.93008 0.92600 1.25877 0.94886 0.96402 1.02019 1.70047 1.38845 1.14807 1.33177 0.85455 0.78829 0.77389 0.79078 1.18534 1.20500 1.20056 1.20917 0.87645 0.86198 0.76198 1.90662 1.16100 1.88121 1.52606 1.21748 0.99031 0.89504 1.06684 1.21463 0.92023 0.77157 1.05898 1.48611 1.31138 1.14466 1.20569 1.22797 1.00129 0.87626 0.96442 1.20874 1.08110 0.93013 1.02107 1.98325 1.97008 1.28371 1.77497 1.24335 0.99974 0.92820 0.95104 1.77462 1.06485 1.15130 1.14158 0.91211 0.91397 0.89004 0.95923 0.98109 0.92366 0.86820 0.86710 0.86531 0.89412 0.77572 0.76942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.25 10.24 127.77 1.31 3.56 16 2 N -0.61 -24.88 2.86 -851.13 -2.43 -27.31 16 3 C 0.26 13.68 5.16 85.63 0.44 14.13 16 4 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 5 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.41 5.46 84.66 0.46 0.87 16 7 N -0.93 -55.71 13.29 21.45 0.28 -55.43 16 8 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 9 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.50 19.39 7.67 87.66 0.67 20.06 16 13 O -0.59 -28.42 15.56 -3.04 -0.05 -28.46 16 14 C -0.13 -3.31 4.44 29.85 0.13 -3.18 16 15 C 0.16 3.69 5.80 86.38 0.50 4.19 16 16 N -0.37 -8.02 3.68 -347.92 -1.28 -9.30 16 17 C 0.08 1.42 11.43 83.54 0.95 2.38 16 18 C -0.20 -3.71 6.65 22.02 0.15 -3.57 16 19 Cl -0.04 -0.66 29.30 -2.72 -0.08 -0.74 16 20 C 0.06 1.20 12.02 85.25 1.02 2.22 16 21 N -0.31 -7.23 12.42 -56.98 -0.71 -7.93 16 22 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.07 2.07 8.07 -2.38 -0.02 2.05 16 24 H 0.09 2.01 6.44 -2.38 -0.02 2.00 16 25 H 0.02 1.23 8.07 -2.38 -0.02 1.21 16 26 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 27 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.11 2.50 7.40 -2.39 -0.02 2.48 16 29 H 0.11 2.70 8.11 -2.39 -0.02 2.68 16 30 H 0.12 2.59 8.03 -2.39 -0.02 2.57 16 31 H 0.09 2.28 8.10 -2.39 -0.02 2.26 16 32 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.21 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -72.11 308.25 4.76 -67.34 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: 1.11 Total: 5.68 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 5.88 Total: 10.10 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -4.13 Total: -99.97 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.05 Total: -28.46 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -72.11 4.76 -67.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038053489.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.491 kcal (2) G-P(sol) polarization free energy of solvation -72.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds