Wall clock time and date at job start Mon Mar 30 2020 01:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36607 * 126.00021 * 2 1 4 4 N 1.38904 * 125.99049 * 359.94396 * 3 2 1 5 5 N 1.31025 * 108.02099 * 179.97438 * 3 2 1 6 6 N 1.40105 * 108.00872 * 359.97438 * 5 3 2 7 7 C 1.31085 * 107.98801 * 0.02562 * 6 5 3 8 8 S 1.76193 * 126.00834 * 180.02562 * 7 6 5 9 9 C 1.81394 * 103.00152 * 359.97202 * 8 7 6 10 10 C 1.50708 * 109.47294 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99814 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99824 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99519 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46716 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00213 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99625 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00544 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99838 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47163 * 89.99743 * 18 16 14 20 20 H 1.48499 * 109.47268 * 209.99643 * 18 16 14 21 21 H 1.48501 * 109.46952 * 330.00009 * 18 16 14 22 22 H 1.08994 * 109.47255 * 270.03359 * 1 2 3 23 23 H 1.09007 * 109.46738 * 30.03423 * 1 2 3 24 24 H 1.08999 * 109.46608 * 150.02839 * 1 2 3 25 25 H 0.97001 * 119.99939 * 180.02562 * 4 3 2 26 26 H 0.96994 * 120.00049 * 0.06012 * 4 3 2 27 27 H 1.08996 * 109.47149 * 299.99954 * 9 8 7 28 28 H 1.08996 * 109.47076 * 60.00099 * 9 8 7 29 29 H 0.97002 * 120.00453 * 359.97438 * 12 10 9 30 30 H 1.09007 * 109.47076 * 299.98988 * 13 12 10 31 31 H 1.08996 * 109.47547 * 59.99535 * 13 12 10 32 32 H 0.97000 * 120.00775 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2680 1.1052 0.0000 4 7 1.8385 2.4262 -0.0011 5 7 3.5142 0.7007 0.0006 6 7 3.5150 -0.7003 0.0015 7 6 2.2684 -1.1058 0.0010 8 16 1.7242 -2.7816 0.0024 9 6 3.2792 -3.7156 0.0038 10 6 2.9782 -5.1923 0.0045 11 8 1.8279 -5.5767 0.0036 12 7 3.9873 -6.0857 0.0061 13 6 3.6947 -7.5212 0.0062 14 6 4.9866 -8.2971 0.0088 15 1 5.9311 -7.7734 0.0098 16 6 4.9627 -9.6757 0.0099 17 7 3.8126 -10.3135 0.0092 18 14 6.5641 -10.6376 0.0124 19 1 6.9869 -10.8913 1.4131 20 1 6.3648 -11.9325 -0.6868 21 1 7.6134 -9.8536 -0.6872 22 1 -0.3633 0.0006 1.0276 23 1 -0.3633 0.8898 -0.5144 24 1 -0.3632 -0.8903 -0.5134 25 1 2.4875 3.1471 -0.0014 26 1 0.8897 2.6277 -0.0011 27 1 3.8555 -3.4631 -0.8862 28 1 3.8549 -3.4614 0.8937 29 1 4.9073 -5.7782 0.0065 30 1 3.1176 -7.7743 0.8957 31 1 3.1197 -7.7749 -0.8843 32 1 3.7957 -11.2834 0.0103 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042238681.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:39 Heat of formation + Delta-G solvation = 47.842557 kcal Electronic energy + Delta-G solvation = -17390.444851 eV Core-core repulsion = 14321.031913 eV Total energy + Delta-G solvation = -3069.412938 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.93841 -38.86726 -35.15701 -34.32451 -34.24739 -32.43339 -30.25698 -29.39058 -27.32317 -26.82565 -22.97961 -22.67120 -21.51814 -19.91821 -18.09408 -17.66493 -17.02894 -16.48272 -16.45465 -15.87331 -15.39124 -15.18617 -15.10713 -14.23734 -13.69425 -13.57373 -13.33301 -12.98347 -12.77350 -12.00442 -11.87110 -11.61850 -11.33211 -11.21612 -10.99439 -10.89732 -10.42419 -10.32962 -10.02316 -9.44133 -9.34455 -9.11747 -8.78079 -8.01132 -7.59195 -6.19038 -4.26239 0.80782 1.80837 2.03289 2.18445 2.48085 3.13683 3.23989 3.24421 3.30722 3.33196 3.93442 4.21997 4.34206 4.73119 4.95602 5.03827 5.09148 5.15346 5.18090 5.27267 5.48643 5.73337 6.11295 6.90514 7.02543 7.21560 7.28518 7.45598 7.60560 7.92271 8.06899 8.47703 8.68660 8.93631 9.40153 10.91087 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.052483 B = 0.003080 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.374886 B = 9088.319539 C = 9595.946332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.509 5.509 3 C 0.480 3.520 4 N -0.831 5.831 5 N -0.370 5.370 6 N -0.308 5.308 7 C 0.188 3.812 8 S 0.071 5.929 9 C -0.140 4.140 10 C 0.518 3.482 11 O -0.543 6.543 12 N -0.701 5.701 13 C 0.250 3.750 14 C -0.545 4.545 15 H 0.065 0.935 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.424 0.576 26 H 0.407 0.593 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.395 0.605 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.117 23.227 -0.067 24.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.216 5.216 3 C 0.115 3.885 4 N -0.390 5.390 5 N -0.210 5.210 6 N -0.141 5.141 7 C -0.194 4.194 8 S 0.297 5.703 9 C -0.293 4.293 10 C 0.300 3.700 11 O -0.422 6.422 12 N -0.349 5.349 13 C 0.129 3.871 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.197 1.197 22 H 0.099 0.901 23 H 0.103 0.897 24 H 0.115 0.885 25 H 0.257 0.743 26 H 0.237 0.763 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.228 0.772 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.354 22.231 -0.073 23.416 hybrid contribution 0.951 0.594 0.009 1.121 sum -6.404 22.825 -0.063 23.706 Atomic orbital electron populations 1.22081 0.76091 1.05098 1.04095 1.45876 1.08296 1.03316 1.64130 1.20909 0.87411 0.82998 0.97222 1.40975 1.10725 1.00267 1.87033 1.78093 1.11327 1.01410 1.30193 1.78162 1.13459 1.01023 1.21502 1.26720 0.90770 0.95978 1.05939 1.86028 1.08187 0.83595 1.92457 1.23825 0.99780 0.96640 1.09020 1.19411 0.86431 0.85778 0.78356 1.90706 1.20211 1.80207 1.51105 1.46387 1.08052 1.08988 1.71475 1.19202 0.97195 0.72601 0.98059 1.21215 0.92093 0.91579 1.53436 0.91731 1.24946 0.96868 0.97541 0.94599 1.69966 1.24751 1.08779 1.48763 0.86397 0.82873 0.79287 0.78266 1.20424 1.20993 1.19679 0.90110 0.89718 0.88506 0.74288 0.76311 0.86087 0.86070 0.77182 0.95185 0.95179 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.43 10.76 59.85 0.64 1.07 16 2 N -0.51 -5.55 3.17 -124.87 -0.40 -5.95 16 3 C 0.48 5.44 9.14 -318.43 -2.91 2.53 16 4 N -0.83 -4.95 9.09 30.37 0.28 -4.67 16 5 N -0.37 -5.68 12.72 30.38 0.39 -5.29 16 6 N -0.31 -5.02 12.29 30.67 0.38 -4.65 16 7 C 0.19 2.63 8.10 -88.37 -0.72 1.91 16 8 S 0.07 1.00 20.61 -107.50 -2.22 -1.22 16 9 C -0.14 -2.07 6.06 36.01 0.22 -1.85 16 10 C 0.52 9.97 7.85 -10.98 -0.09 9.89 16 11 O -0.54 -12.40 15.86 5.56 0.09 -12.32 16 12 N -0.70 -14.30 5.55 -61.47 -0.34 -14.65 16 13 C 0.25 6.46 5.43 -5.19 -0.03 6.43 16 14 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.08 0.27 7.50 -51.93 -0.39 -0.12 16 24 H 0.10 0.61 7.72 -51.93 -0.40 0.20 16 25 H 0.42 1.96 8.95 -40.82 -0.37 1.59 16 26 H 0.41 1.13 8.09 -40.82 -0.33 0.80 16 27 H 0.12 1.62 8.14 -51.93 -0.42 1.19 16 28 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.40 6.90 8.32 -40.82 -0.34 6.56 16 30 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 302.72 15.07 4.56 4.56 Total: -1.00 -35.66 302.72 -8.32 -43.97 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -3.47 Total: 2.76 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -3.29 Total: 6.77 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 1.04 Total: -60.23 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.22 Total: -1.22 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.66 -8.32 -43.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042238681.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.816 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds