Wall clock time and date at job start Mon Mar 30 2020 01:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36607 * 126.00021 * 2 1 4 4 N 1.38904 * 125.99049 * 359.94396 * 3 2 1 5 5 N 1.31025 * 108.02099 * 179.97438 * 3 2 1 6 6 N 1.40105 * 108.00872 * 359.97438 * 5 3 2 7 7 C 1.31085 * 107.98801 * 0.02562 * 6 5 3 8 8 S 1.76193 * 126.00834 * 180.02562 * 7 6 5 9 9 C 1.81394 * 103.00152 * 359.97202 * 8 7 6 10 10 C 1.50708 * 109.47294 * 180.02562 * 9 8 7 11 11 O 1.21279 * 119.99814 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99824 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99519 * 180.02562 * 12 10 9 14 14 C 1.50702 * 109.46716 * 180.02562 * 13 12 10 15 15 H 1.07995 * 120.00213 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99625 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00544 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99838 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47163 * 89.99743 * 18 16 14 20 20 H 1.48499 * 109.47268 * 209.99643 * 18 16 14 21 21 H 1.48501 * 109.46952 * 330.00009 * 18 16 14 22 22 H 1.08994 * 109.47255 * 270.03359 * 1 2 3 23 23 H 1.09007 * 109.46738 * 30.03423 * 1 2 3 24 24 H 1.08999 * 109.46608 * 150.02839 * 1 2 3 25 25 H 0.97001 * 119.99939 * 180.02562 * 4 3 2 26 26 H 0.96994 * 120.00049 * 0.06012 * 4 3 2 27 27 H 1.08996 * 109.47149 * 299.99954 * 9 8 7 28 28 H 1.08996 * 109.47076 * 60.00099 * 9 8 7 29 29 H 0.97002 * 120.00453 * 359.97438 * 12 10 9 30 30 H 1.09007 * 109.47076 * 299.98988 * 13 12 10 31 31 H 1.08996 * 109.47547 * 59.99535 * 13 12 10 32 32 H 0.97000 * 120.00775 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2680 1.1052 0.0000 4 7 1.8385 2.4262 -0.0011 5 7 3.5142 0.7007 0.0006 6 7 3.5150 -0.7003 0.0015 7 6 2.2684 -1.1058 0.0010 8 16 1.7242 -2.7816 0.0024 9 6 3.2792 -3.7156 0.0038 10 6 2.9782 -5.1923 0.0045 11 8 1.8279 -5.5767 0.0036 12 7 3.9873 -6.0857 0.0061 13 6 3.6947 -7.5212 0.0062 14 6 4.9866 -8.2971 0.0088 15 1 5.9311 -7.7734 0.0098 16 6 4.9627 -9.6757 0.0099 17 7 3.8126 -10.3135 0.0092 18 14 6.5641 -10.6376 0.0124 19 1 6.9869 -10.8913 1.4131 20 1 6.3648 -11.9325 -0.6868 21 1 7.6134 -9.8536 -0.6872 22 1 -0.3633 0.0006 1.0276 23 1 -0.3633 0.8898 -0.5144 24 1 -0.3632 -0.8903 -0.5134 25 1 2.4875 3.1471 -0.0014 26 1 0.8897 2.6277 -0.0011 27 1 3.8555 -3.4631 -0.8862 28 1 3.8549 -3.4614 0.8937 29 1 4.9073 -5.7782 0.0065 30 1 3.1176 -7.7743 0.8957 31 1 3.1197 -7.7749 -0.8843 32 1 3.7957 -11.2834 0.0103 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042238681.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:39 Heat of formation + Delta-G solvation = 22.126671 kcal Electronic energy + Delta-G solvation = -17391.559976 eV Core-core repulsion = 14321.031913 eV Total energy + Delta-G solvation = -3070.528063 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.84075 -40.54999 -36.21023 -35.89680 -35.03523 -34.40781 -31.65497 -30.42285 -28.73604 -27.96193 -24.68776 -23.92183 -22.43496 -21.56484 -19.28705 -18.64611 -18.24764 -17.57849 -17.41410 -17.31693 -16.94278 -16.68076 -16.23680 -15.91881 -14.98238 -14.62710 -14.42998 -14.14875 -13.99848 -13.81752 -13.52965 -12.91680 -12.71165 -12.62370 -12.33468 -12.22295 -12.17708 -11.49952 -11.46672 -11.04883 -10.88630 -10.80403 -9.98146 -9.85810 -8.64022 -8.28391 -6.44274 -0.28246 0.85329 0.90320 1.40096 1.45245 1.46682 1.54810 1.55879 1.58068 2.29346 2.49304 2.63438 3.06993 3.60559 3.75423 3.98400 4.16085 4.27665 4.30983 4.35906 4.59980 4.93672 5.10092 5.25225 5.42923 5.43881 5.63334 5.84242 6.28650 6.43148 6.64607 6.75000 7.20751 7.23633 7.35267 8.83589 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.052483 B = 0.003080 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.374886 B = 9088.319539 C = 9595.946332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.506 5.506 3 C 0.488 3.512 4 N -0.805 5.805 5 N -0.418 5.418 6 N -0.344 5.344 7 C 0.183 3.817 8 S 0.076 5.924 9 C -0.130 4.130 10 C 0.521 3.479 11 O -0.581 6.581 12 N -0.697 5.697 13 C 0.266 3.734 14 C -0.557 4.557 15 H 0.084 0.916 16 C 0.006 3.994 17 N -0.929 5.929 18 Si 0.982 3.018 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.257 1.257 22 H 0.095 0.905 23 H 0.119 0.881 24 H 0.094 0.906 25 H 0.432 0.568 26 H 0.425 0.575 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.412 0.588 30 H -0.005 1.005 31 H -0.005 1.005 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 25.097 -0.080 25.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.214 5.214 3 C 0.122 3.878 4 N -0.367 5.367 5 N -0.260 5.260 6 N -0.177 5.177 7 C -0.200 4.200 8 S 0.302 5.698 9 C -0.282 4.282 10 C 0.305 3.695 11 O -0.463 6.463 12 N -0.347 5.347 13 C 0.144 3.856 14 C -0.595 4.595 15 H 0.102 0.898 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.805 3.195 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.181 1.181 22 H 0.114 0.886 23 H 0.138 0.862 24 H 0.113 0.887 25 H 0.267 0.733 26 H 0.259 0.741 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.248 0.752 30 H 0.013 0.987 31 H 0.013 0.987 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.808 24.188 -0.085 25.128 hybrid contribution 0.630 0.150 0.015 0.647 sum -6.179 24.338 -0.070 25.110 Atomic orbital electron populations 1.22475 0.73307 1.06809 1.05671 1.46019 1.09806 1.02221 1.63312 1.21141 0.86774 0.84574 0.95361 1.41026 1.12139 0.98266 1.85257 1.77963 1.13782 1.01045 1.33254 1.78031 1.14875 1.02063 1.22773 1.26599 0.91004 0.96373 1.06041 1.86009 1.07174 0.83887 1.92767 1.23625 1.00867 0.92931 1.10778 1.20031 0.85371 0.87512 0.76547 1.90689 1.21823 1.81372 1.52371 1.46086 1.09443 1.07181 1.71946 1.18645 0.96454 0.75772 0.94765 1.21615 0.92804 0.92129 1.52929 0.89841 1.26005 1.00647 0.98832 0.93894 1.70117 1.27498 1.09225 1.49929 0.85193 0.78240 0.77463 0.78560 1.19674 1.20958 1.18084 0.88603 0.86224 0.88702 0.73291 0.74147 0.84288 0.84277 0.75203 0.98717 0.98694 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 10.76 127.77 1.38 1.94 16 2 N -0.51 -10.06 3.17 -548.97 -1.74 -11.80 16 3 C 0.49 10.10 9.14 259.96 2.38 12.47 16 4 N -0.81 -7.25 9.09 -57.82 -0.53 -7.78 16 5 N -0.42 -12.50 12.72 -57.80 -0.74 -13.24 16 6 N -0.34 -10.99 12.29 -56.87 -0.70 -11.69 16 7 C 0.18 4.92 8.10 179.56 1.45 6.37 16 8 S 0.08 2.07 20.61 -56.49 -1.16 0.90 16 9 C -0.13 -3.72 6.06 71.24 0.43 -3.29 16 10 C 0.52 20.15 7.85 87.66 0.69 20.84 16 11 O -0.58 -27.20 15.86 -3.03 -0.05 -27.25 16 12 N -0.70 -28.66 5.55 -466.77 -2.59 -31.25 16 13 C 0.27 14.24 5.43 85.63 0.46 14.70 16 14 C -0.56 -29.85 9.28 25.60 0.24 -29.62 16 15 H 0.08 4.06 7.60 -2.91 -0.02 4.04 16 16 C 0.01 0.33 5.46 84.66 0.46 0.80 16 17 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 18 Si 0.98 42.13 29.54 68.60 2.03 44.16 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 21 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 22 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.12 0.28 7.50 -2.38 -0.02 0.26 16 24 H 0.09 0.99 7.72 -2.39 -0.02 0.97 16 25 H 0.43 2.84 8.95 -92.71 -0.83 2.01 16 26 H 0.42 0.76 8.09 -92.71 -0.75 0.01 16 27 H 0.14 3.53 8.14 -2.39 -0.02 3.51 16 28 H 0.14 3.53 8.14 -2.39 -0.02 3.51 16 29 H 0.41 14.05 8.32 -92.71 -0.77 13.28 16 30 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 31 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 32 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -79.69 302.72 1.14 -78.55 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -1.16 Total: 10.20 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 7.49 Total: 24.21 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -6.01 Total: -130.78 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.16 Total: 0.90 kcal Total: -79.69 1.14 -78.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042238681.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.676 kcal (2) G-P(sol) polarization free energy of solvation -79.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds