Wall clock time and date at job start Mon Mar 30 2020 01:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46894 * 109.46971 * 2 1 4 4 C 1.46906 * 111.00319 * 71.44782 * 3 2 1 5 5 C 1.50692 * 109.46810 * 285.09434 * 4 3 2 6 6 H 1.08004 * 120.00701 * 357.76013 * 5 4 3 7 7 C 1.37881 * 120.00156 * 177.76387 * 5 4 3 8 8 N 1.31516 * 119.99324 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00496 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47091 * 59.99747 * 9 7 5 11 11 H 1.48495 * 109.47171 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46817 * 300.00066 * 9 7 5 13 13 C 1.46903 * 111.00036 * 195.40097 * 3 2 1 14 14 C 1.50701 * 109.47051 * 66.04270 * 13 3 2 15 15 C 1.38457 * 120.01618 * 90.00334 * 14 13 3 16 16 F 1.35102 * 120.01833 * 0.02562 * 15 14 13 17 17 C 1.38441 * 119.96370 * 179.97438 * 15 14 13 18 18 C 1.38229 * 120.00218 * 0.02562 * 17 15 14 19 19 C 1.38200 * 120.03695 * 359.97438 * 18 17 15 20 20 C 1.38288 * 120.02293 * 269.72889 * 14 13 3 21 21 Cl 1.73604 * 120.00030 * 0.02562 * 20 14 13 22 22 H 1.09000 * 109.46839 * 50.90734 * 1 2 3 23 23 H 1.08999 * 109.47199 * 170.90023 * 1 2 3 24 24 H 1.08996 * 109.46991 * 290.90974 * 1 2 3 25 25 H 1.09003 * 109.46777 * 240.00106 * 2 1 3 26 26 H 1.08997 * 109.46602 * 119.99957 * 2 1 3 27 27 H 1.08996 * 109.46506 * 45.09018 * 4 3 2 28 28 H 1.08994 * 109.47168 * 165.09031 * 4 3 2 29 29 H 0.97009 * 119.99754 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.47582 * 186.04905 * 13 3 2 31 31 H 1.09006 * 109.46840 * 306.04882 * 13 3 2 32 32 H 1.07999 * 120.00380 * 179.97438 * 17 15 14 33 33 H 1.08000 * 119.98187 * 180.02562 * 18 17 15 34 34 H 1.07996 * 119.98572 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7838 2.0268 1.3002 5 6 0.3221 2.3681 1.4340 6 1 -0.3568 2.1649 0.6189 7 6 -0.1487 2.9400 2.5969 8 7 0.6781 3.1880 3.5892 9 14 -1.9604 3.3637 2.7625 10 1 -2.7729 2.1296 2.6152 11 1 -2.2084 3.9637 4.0981 12 1 -2.3401 4.3354 1.7057 13 6 3.4417 1.4406 -0.3642 14 6 3.6113 1.0003 -1.7955 15 6 3.5514 1.9316 -2.8183 16 9 3.3415 3.2355 -2.5338 17 6 3.7079 1.5260 -4.1327 18 6 3.9232 0.1918 -4.4234 19 6 3.9830 -0.7377 -3.4025 20 6 3.8324 -0.3332 -2.0876 21 17 3.9141 -1.5007 -0.8054 22 1 -0.3633 0.6480 -0.7976 23 1 -0.3633 -1.0147 -0.1625 24 1 -0.3633 0.3668 0.9600 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0722 1.3445 2.0997 28 1 2.3775 2.9383 1.3684 29 1 0.3468 3.5899 4.4075 30 1 3.8057 2.4619 -0.2527 31 1 4.0103 0.7788 0.2892 32 1 3.6609 2.2517 -4.9311 33 1 4.0456 -0.1241 -5.4489 34 1 4.1516 -1.7798 -3.6305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454588.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:08 Heat of formation + Delta-G solvation = -35.478405 kcal Electronic energy + Delta-G solvation = -18918.318358 eV Core-core repulsion = 15791.035933 eV Total energy + Delta-G solvation = -3127.282425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.89824 -40.51768 -38.42410 -37.49324 -34.79639 -33.15498 -31.46643 -31.10709 -29.15625 -26.34149 -24.41348 -23.69172 -22.89783 -21.50582 -18.81581 -18.43677 -17.76021 -17.14829 -16.83744 -16.52170 -16.23818 -15.74773 -15.43158 -15.35386 -14.61215 -14.35693 -14.14530 -14.12211 -13.57746 -13.17420 -12.99978 -12.85577 -12.78108 -12.47623 -12.44165 -12.31912 -12.10649 -12.05470 -11.79267 -11.27952 -11.01617 -10.52645 -9.88405 -9.68745 -9.06087 -8.16268 -6.22360 -0.00997 0.07943 1.01632 1.40935 1.44226 1.51672 2.38948 2.45961 3.15345 3.29215 3.33664 3.58363 3.77381 3.93801 4.25318 4.31453 4.39589 4.45046 4.57737 4.63296 4.79771 4.94762 4.98937 5.07144 5.10950 5.14822 5.20493 5.23551 5.34221 5.64908 5.72130 5.76957 6.07798 6.35125 6.57386 6.89415 7.43271 8.94692 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.005822 C = 0.005282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.242792 B = 4808.262738 C = 5299.667433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.064 3.936 3 N -0.533 5.533 4 C 0.210 3.790 5 C -0.509 4.509 6 H 0.077 0.923 7 C -0.002 4.002 8 N -0.939 5.939 9 Si 0.964 3.036 10 H -0.265 1.265 11 H -0.285 1.285 12 H -0.270 1.270 13 C 0.088 3.912 14 C -0.116 4.116 15 C 0.102 3.898 16 F -0.145 7.145 17 C -0.144 4.144 18 C -0.067 4.067 19 C -0.114 4.114 20 C -0.021 4.021 21 Cl -0.062 7.062 22 H 0.047 0.953 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.010 0.990 27 H -0.035 1.035 28 H -0.004 1.004 29 H 0.262 0.738 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.166 0.834 33 H 0.187 0.813 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.312 -9.457 -17.538 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.063 4.063 3 N -0.258 5.258 4 C 0.084 3.916 5 C -0.547 4.547 6 H 0.095 0.905 7 C -0.199 4.199 8 N -0.580 5.580 9 Si 0.789 3.211 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.195 1.195 13 C -0.040 4.040 14 C -0.119 4.119 15 C 0.082 3.918 16 F -0.124 7.124 17 C -0.162 4.162 18 C -0.084 4.084 19 C -0.133 4.133 20 C -0.048 4.048 21 Cl -0.033 7.033 22 H 0.066 0.934 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.100 0.900 26 H 0.029 0.971 27 H -0.017 1.017 28 H 0.014 0.986 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.183 0.817 33 H 0.204 0.796 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.053 -9.175 -17.565 21.035 hybrid contribution -0.246 0.398 1.831 1.890 sum 6.806 -8.777 -15.734 19.260 Atomic orbital electron populations 1.21984 0.95213 1.00264 1.02654 1.22208 0.96576 0.88202 0.99338 1.62210 1.13975 1.17443 1.32142 1.19427 0.96729 0.91809 0.83681 1.21611 0.94059 1.38707 1.00371 0.90544 1.25901 1.02575 0.95891 0.95551 1.70101 1.36853 1.45045 1.05970 0.85510 0.79618 0.78885 0.77105 1.18948 1.21086 1.19519 1.20894 0.90837 1.00591 0.91640 1.19672 1.03703 0.92862 0.95626 1.17722 1.02203 0.77759 0.94121 1.91494 1.92324 1.33945 1.94627 1.21606 1.01710 0.99219 0.93712 1.21431 0.95547 0.90303 1.01169 1.21477 1.00141 1.02730 0.88915 1.20767 1.04584 0.88562 0.90896 1.98377 1.96292 1.57441 1.51171 0.93375 0.91904 0.92367 0.89995 0.97128 1.01686 0.98595 0.92928 0.91671 0.93908 0.81656 0.79569 0.81445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 8.52 71.98 0.61 -5.21 16 2 C 0.06 2.64 4.34 86.31 0.37 3.01 16 3 N -0.53 -24.57 4.48 -905.37 -4.06 -28.63 16 4 C 0.21 11.68 4.75 85.55 0.41 12.09 16 5 C -0.51 -29.31 6.95 25.60 0.18 -29.13 16 6 H 0.08 4.27 5.67 -2.91 -0.02 4.25 16 7 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 8 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 9 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 13 C 0.09 3.53 4.71 85.56 0.40 3.93 16 14 C -0.12 -3.75 4.93 -19.80 -0.10 -3.85 16 15 C 0.10 3.03 7.24 22.37 0.16 3.19 16 16 F -0.15 -5.12 16.48 44.97 0.74 -4.38 16 17 C -0.14 -2.83 10.03 22.32 0.22 -2.61 16 18 C -0.07 -0.95 10.04 22.26 0.22 -0.72 16 19 C -0.11 -2.02 9.83 22.30 0.22 -1.80 16 20 C -0.02 -0.55 5.22 22.32 0.12 -0.43 16 21 Cl -0.06 -1.68 24.35 -2.72 -0.07 -1.75 16 22 H 0.05 1.96 7.77 -2.39 -0.02 1.94 16 23 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 24 H 0.06 2.73 5.64 -2.39 -0.01 2.71 16 25 H 0.08 2.92 4.22 -2.39 -0.01 2.91 16 26 H 0.01 0.45 7.73 -2.39 -0.02 0.44 16 27 H -0.03 -2.09 7.81 -2.39 -0.02 -2.11 16 28 H 0.00 -0.25 7.75 -2.39 -0.02 -0.26 16 29 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 30 H 0.06 2.76 7.33 -2.39 -0.02 2.74 16 31 H 0.04 1.69 6.87 -2.38 -0.02 1.67 16 32 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -68.78 292.88 3.33 -65.45 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: 1.11 Total: 0.88 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 3.28 Total: -21.19 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -3.77 Total: -86.30 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.74 Total: -4.38 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.07 Total: -1.75 kcal Total: -68.78 3.33 -65.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454588.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.974 kcal (2) G-P(sol) polarization free energy of solvation -68.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds