Wall clock time and date at job start Mon Mar 30 2020 01:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47189 * 2 1 4 4 N 1.46492 * 109.47147 * 180.02562 * 3 2 1 5 5 C 1.36934 * 120.00258 * 269.99897 * 4 3 2 6 6 H 1.08003 * 119.99808 * 321.44624 * 5 4 3 7 7 C 1.38814 * 120.00255 * 141.44278 * 5 4 3 8 8 N 1.31622 * 120.00025 * 162.57206 * 7 5 4 9 9 Si 1.86799 * 119.99835 * 342.57067 * 7 5 4 10 10 H 1.48493 * 109.47055 * 94.37479 * 9 7 5 11 11 H 1.48503 * 109.46955 * 214.37626 * 9 7 5 12 12 H 1.48500 * 109.47068 * 334.37185 * 9 7 5 13 13 C 1.46501 * 120.00013 * 90.00116 * 4 3 2 14 14 C 1.50692 * 109.47432 * 84.04888 * 13 4 3 15 15 C 1.38460 * 120.01866 * 83.51720 * 14 13 4 16 16 F 1.35091 * 120.02194 * 359.97438 * 15 14 13 17 17 C 1.38452 * 119.95966 * 179.97438 * 15 14 13 18 18 C 1.38229 * 120.00268 * 359.97438 * 17 15 14 19 19 C 1.38206 * 120.03729 * 359.97438 * 18 17 15 20 20 C 1.38299 * 120.02143 * 263.24213 * 14 13 4 21 21 Cl 1.73600 * 119.99592 * 0.02562 * 20 14 13 22 22 H 1.09002 * 109.47297 * 299.99939 * 1 2 3 23 23 H 1.09001 * 109.47332 * 59.99830 * 1 2 3 24 24 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46797 * 240.00176 * 2 1 3 26 26 H 1.08995 * 109.46891 * 120.00164 * 2 1 3 27 27 H 1.09002 * 109.46951 * 59.99849 * 3 2 1 28 28 H 1.09001 * 109.47122 * 300.00299 * 3 2 1 29 29 H 0.97000 * 119.99474 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47187 * 204.05337 * 13 4 3 31 31 H 1.09000 * 109.47365 * 324.04534 * 13 4 3 32 32 H 1.08004 * 119.99691 * 179.97438 * 17 15 14 33 33 H 1.07999 * 119.98174 * 180.02562 * 18 17 15 34 34 H 1.07992 * 119.98220 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1902 1.4423 1.1849 6 1 3.8271 2.0252 2.0186 7 6 5.3514 0.6930 1.3154 8 7 6.1893 0.9436 2.2991 9 14 5.7248 -0.6709 0.0949 10 1 6.5937 -0.1426 -0.9872 11 1 6.4221 -1.7815 0.7919 12 1 4.4556 -1.1730 -0.4900 13 6 4.2369 1.4427 -1.2697 14 6 4.3603 2.8559 -1.7782 15 6 5.3756 3.6737 -1.3118 16 9 6.2557 3.2055 -0.4001 17 6 5.4881 4.9717 -1.7802 18 6 4.5877 5.4503 -2.7134 19 6 3.5750 4.6336 -3.1798 20 6 3.4631 3.3349 -2.7153 21 17 2.1938 2.3082 -3.3056 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 7.0005 0.4197 2.3904 30 1 5.2314 1.0238 -1.1156 31 1 3.6979 0.8395 -2.0002 32 1 6.2796 5.6103 -1.4165 33 1 4.6761 6.4627 -3.0789 34 1 2.8717 5.0085 -3.9085 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044373566.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:33 Heat of formation + Delta-G solvation = -25.242787 kcal Electronic energy + Delta-G solvation = -19412.185848 eV Core-core repulsion = 16285.347272 eV Total energy + Delta-G solvation = -3126.838576 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.70994 -40.25632 -38.06258 -37.40818 -34.65820 -33.74838 -31.91329 -31.28738 -27.78673 -27.42122 -24.01901 -23.68387 -22.86507 -21.50988 -19.10090 -18.44401 -17.85945 -17.19849 -16.62854 -16.53807 -16.01513 -15.67697 -15.65106 -15.05470 -14.54081 -14.52807 -14.25306 -14.15873 -13.84360 -13.38815 -13.02345 -12.90712 -12.65515 -12.37979 -12.29659 -12.20939 -12.13453 -11.97294 -11.69425 -11.54503 -11.27224 -10.69585 -9.76569 -9.60446 -8.81561 -8.18341 -5.59435 0.06437 0.16959 1.08248 1.23052 1.33064 1.43049 2.38482 2.48794 3.12965 3.38649 3.46219 3.77402 3.82762 3.99877 4.22399 4.31685 4.36656 4.47029 4.58085 4.64460 4.68260 4.78992 4.92296 5.05531 5.14585 5.19463 5.22148 5.24816 5.26448 5.39465 5.56358 5.84866 5.94988 6.17747 6.95236 7.60288 8.02994 9.01227 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014571 B = 0.011072 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.143383 B = 2528.277898 C = 3806.207014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.146 3.854 4 N -0.603 5.603 5 C -0.247 4.247 6 H 0.039 0.961 7 C 0.000 4.000 8 N -0.942 5.942 9 Si 0.923 3.077 10 H -0.283 1.283 11 H -0.306 1.306 12 H -0.251 1.251 13 C 0.165 3.835 14 C -0.143 4.143 15 C 0.091 3.909 16 F -0.145 7.145 17 C -0.156 4.156 18 C -0.072 4.072 19 C -0.117 4.117 20 C -0.015 4.015 21 Cl -0.056 7.056 22 H 0.055 0.945 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.260 0.740 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.185 0.815 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.970 7.259 -14.577 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.022 3.978 4 N -0.324 5.324 5 C -0.377 4.377 6 H 0.057 0.943 7 C -0.197 4.197 8 N -0.586 5.586 9 Si 0.753 3.247 10 H -0.211 1.211 11 H -0.235 1.235 12 H -0.175 1.175 13 C 0.040 3.960 14 C -0.148 4.148 15 C 0.071 3.929 16 F -0.123 7.123 17 C -0.175 4.175 18 C -0.090 4.090 19 C -0.135 4.135 20 C -0.043 4.043 21 Cl -0.027 7.027 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.171 0.829 33 H 0.202 0.798 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.945 7.072 -14.483 17.970 hybrid contribution 0.959 -1.191 0.401 1.581 sum -6.987 5.881 -14.082 16.784 Atomic orbital electron populations 1.21639 0.93821 1.01951 1.02066 1.21989 0.96750 0.98839 1.00323 1.21156 0.81551 0.95086 1.00006 1.44176 1.01943 1.85906 1.00379 1.18511 1.06504 1.21859 0.90835 0.94315 1.25849 0.97139 0.99094 0.97598 1.69926 1.11653 1.41711 1.35332 0.86168 0.78581 0.80683 0.79256 1.21098 1.23503 1.17503 1.20196 0.96502 0.90790 0.88533 1.20716 0.95639 1.00448 0.97954 1.17997 0.89883 0.94320 0.90721 1.91575 1.66851 1.89215 1.64683 1.21566 1.02970 0.92897 1.00051 1.21349 0.91977 1.01345 0.94361 1.21441 1.00213 0.90494 1.01361 1.20667 0.92157 0.93422 0.98056 1.98337 1.49456 1.68236 1.86655 0.92599 0.91856 0.92124 0.93601 0.94403 0.94293 0.91428 0.93050 0.94076 0.90949 0.82879 0.79824 0.81192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.14 -5.10 6.26 30.60 0.19 -4.91 16 3 C 0.15 5.90 5.68 86.38 0.49 6.39 16 4 N -0.60 -29.11 2.07 -706.36 -1.47 -30.57 16 5 C -0.25 -14.32 9.83 84.03 0.83 -13.49 16 6 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 7 C 0.00 0.02 5.35 84.86 0.45 0.48 16 8 N -0.94 -60.30 13.97 21.65 0.30 -59.99 16 9 Si 0.92 47.97 24.78 68.60 1.70 49.67 16 10 H -0.28 -14.44 6.69 99.48 0.67 -13.78 16 11 H -0.31 -16.01 7.11 99.48 0.71 -15.31 16 12 H -0.25 -12.30 7.09 99.48 0.71 -11.59 16 13 C 0.16 7.38 3.81 85.63 0.33 7.71 16 14 C -0.14 -5.59 5.46 -19.80 -0.11 -5.70 16 15 C 0.09 3.64 7.24 22.37 0.16 3.80 16 16 F -0.14 -7.20 16.47 44.97 0.74 -6.46 16 17 C -0.16 -4.49 10.03 22.32 0.22 -4.27 16 18 C -0.07 -1.50 10.04 22.26 0.22 -1.27 16 19 C -0.12 -2.60 9.83 22.30 0.22 -2.39 16 20 C -0.02 -0.47 6.31 22.32 0.14 -0.33 16 21 Cl -0.06 -1.53 25.23 -2.72 -0.07 -1.59 16 22 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.04 1.62 8.04 -2.39 -0.02 1.61 16 28 H 0.07 2.41 5.98 -2.39 -0.01 2.39 16 29 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 30 H 0.04 2.08 3.01 -2.38 -0.01 2.07 16 31 H 0.07 2.95 6.61 -2.39 -0.02 2.94 16 32 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 33 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -70.24 298.07 6.13 -64.10 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: 1.06 Total: 1.85 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 3.86 Total: -17.01 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -1.16 Total: -90.57 kcal Atomic # 9 Polarization: -7.20 SS G_CDS: 0.74 Total: -6.46 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.70 Total: 49.67 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.59 kcal Total: -70.24 6.13 -64.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373566.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.862 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds