Wall clock time and date at job start Mon Mar 30 2020 01:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47578 * 2 1 4 4 N 1.46495 * 109.47260 * 183.07474 * 3 2 1 5 5 C 1.36934 * 120.00044 * 291.23456 * 4 3 2 6 6 H 1.08002 * 119.99978 * 355.92589 * 5 4 3 7 7 C 1.38815 * 120.00359 * 175.93108 * 5 4 3 8 8 N 1.31618 * 119.99995 * 39.85643 * 7 5 4 9 9 Si 1.86797 * 120.00097 * 219.86123 * 7 5 4 10 10 H 1.48506 * 109.47205 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47202 * 119.99485 * 9 7 5 12 12 H 1.48490 * 109.47223 * 239.99589 * 9 7 5 13 13 C 1.46499 * 120.00071 * 111.51270 * 4 3 2 14 14 C 1.50697 * 109.47055 * 263.35290 * 13 4 3 15 15 C 1.38240 * 119.98398 * 263.29683 * 14 13 4 16 16 C 1.38187 * 120.04129 * 179.72565 * 15 14 13 17 17 C 1.38486 * 119.99861 * 0.54876 * 16 15 14 18 18 F 1.35099 * 120.02175 * 179.75127 * 17 16 15 19 19 C 1.38414 * 119.96218 * 359.72302 * 17 16 15 20 20 C 1.38333 * 119.96397 * 0.02562 * 19 17 16 21 21 Cl 1.73599 * 120.00519 * 179.97438 * 20 19 17 22 22 H 1.09001 * 109.47589 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47314 * 300.00097 * 1 2 3 24 24 H 1.09001 * 109.47194 * 60.00154 * 1 2 3 25 25 H 1.09009 * 109.47189 * 239.99852 * 2 1 3 26 26 H 1.09004 * 109.47168 * 120.00373 * 2 1 3 27 27 H 1.08995 * 109.46484 * 63.07226 * 3 2 1 28 28 H 1.08995 * 109.46852 * 303.07530 * 3 2 1 29 29 H 0.96995 * 120.00290 * 183.49075 * 8 7 5 30 30 H 1.08998 * 109.47131 * 23.35298 * 13 4 3 31 31 H 1.08998 * 109.47342 * 143.35082 * 13 4 3 32 32 H 1.08006 * 119.97856 * 0.02562 * 15 14 13 33 33 H 1.08003 * 120.00289 * 180.27404 * 16 15 14 34 34 H 1.08001 * 120.02441 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5031 1.4431 -0.0741 5 6 4.2426 0.9941 0.9874 6 1 3.7505 0.7016 1.9031 7 6 5.6248 0.9151 0.8865 8 7 6.2949 1.8644 0.2682 9 14 6.5339 -0.5384 1.6282 10 1 5.5585 -1.4604 2.2637 11 1 7.2721 -1.2582 0.5595 12 1 7.4938 -0.0521 2.6514 13 6 4.1753 1.9296 -1.2814 14 6 4.5250 0.7615 -2.1670 15 6 5.7938 0.2147 -2.1203 16 6 6.1140 -0.8600 -2.9278 17 6 5.1671 -1.3827 -3.7926 18 9 5.4812 -2.4302 -4.5858 19 6 3.8984 -0.8317 -3.8434 20 6 3.5779 0.2408 -3.0307 21 17 1.9872 0.9332 -3.0941 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.7224 1.9401 0.9162 28 1 1.6324 1.9719 -0.8611 29 1 7.2547 1.7845 0.1533 30 1 3.5116 2.6070 -1.8188 31 1 5.0861 2.4592 -1.0019 32 1 6.5338 0.6247 -1.4489 33 1 7.1042 -1.2895 -2.8876 34 1 3.1590 -1.2388 -4.5172 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044373605.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:35 Heat of formation + Delta-G solvation = -14.495328 kcal Electronic energy + Delta-G solvation = -19414.459802 eV Core-core repulsion = 16288.087271 eV Total energy + Delta-G solvation = -3126.372531 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.93136 -40.30263 -37.76765 -37.34222 -34.78345 -32.93428 -31.90338 -31.45945 -27.37233 -27.17797 -24.08366 -23.86922 -22.23274 -21.71981 -18.95127 -18.64538 -17.58542 -16.77435 -16.66161 -16.45267 -16.02635 -15.64758 -15.52741 -14.84395 -14.70681 -14.51779 -14.20778 -13.92770 -13.34142 -13.21418 -12.94612 -12.83990 -12.56556 -12.31508 -12.23247 -12.18647 -11.95027 -11.71729 -11.66485 -11.53524 -11.23421 -10.41230 -9.86663 -9.39557 -8.87690 -7.81683 -5.08720 0.10054 0.21937 1.14607 1.42585 1.53400 1.58809 2.50550 2.60783 3.11966 3.29350 3.79677 3.84758 3.97158 4.12506 4.30214 4.32872 4.46922 4.69580 4.70924 4.81800 4.86922 4.97029 4.99130 5.12566 5.21767 5.27734 5.30630 5.47450 5.58111 5.68278 5.77130 5.80589 5.92601 6.42386 7.16805 7.92102 8.31787 9.08377 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.012898 B = 0.011568 C = 0.007414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.393339 B = 2419.833333 C = 3775.478343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.149 3.851 4 N -0.592 5.592 5 C -0.250 4.250 6 H 0.069 0.931 7 C -0.018 4.018 8 N -0.883 5.883 9 Si 0.893 3.107 10 H -0.286 1.286 11 H -0.282 1.282 12 H -0.300 1.300 13 C 0.154 3.846 14 C -0.075 4.075 15 C -0.079 4.079 16 C -0.161 4.161 17 C 0.087 3.913 18 F -0.140 7.140 19 C -0.151 4.151 20 C -0.014 4.014 21 Cl -0.051 7.051 22 H 0.057 0.943 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.036 0.964 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.255 0.745 30 H 0.045 0.955 31 H 0.115 0.885 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 -2.939 -7.863 10.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.024 3.976 4 N -0.311 5.311 5 C -0.378 4.378 6 H 0.086 0.914 7 C -0.214 4.214 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.211 1.211 11 H -0.209 1.209 12 H -0.228 1.228 13 C 0.028 3.972 14 C -0.079 4.079 15 C -0.098 4.098 16 C -0.180 4.180 17 C 0.067 3.933 18 F -0.118 7.118 19 C -0.170 4.170 20 C -0.041 4.041 21 Cl -0.022 7.022 22 H 0.076 0.924 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.182 -2.828 -7.834 10.373 hybrid contribution 0.748 -1.102 0.454 1.407 sum -5.434 -3.930 -7.380 9.972 Atomic orbital electron populations 1.21636 0.94528 1.01654 1.01692 1.21909 0.95972 0.98683 1.00476 1.21044 0.82385 0.95181 0.99020 1.44241 1.01111 1.73757 1.12006 1.19249 0.89287 1.34913 0.94374 0.91354 1.24617 0.96026 0.99498 1.01294 1.70104 1.07038 1.28798 1.47102 0.86359 0.78908 0.84514 0.77972 1.21132 1.20858 1.22810 1.20591 1.00580 0.91303 0.84767 1.20923 0.92141 1.00368 0.94438 1.21490 0.97257 0.94288 0.96772 1.21424 1.00519 0.98579 0.97503 1.17390 0.94211 0.87989 0.93725 1.91466 1.93372 1.54878 1.72127 1.20973 0.96350 0.97334 1.02386 1.20608 0.87503 0.96778 0.99215 1.98316 1.22677 1.83752 1.97475 0.92428 0.92535 0.92557 0.93315 0.94550 0.95668 0.91780 0.93388 0.93674 0.86780 0.84269 0.83790 0.82297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.01 16 2 C -0.13 -4.63 5.60 30.59 0.17 -4.46 16 3 C 0.15 5.75 5.10 86.38 0.44 6.19 16 4 N -0.59 -27.09 2.63 -706.37 -1.86 -28.95 16 5 C -0.25 -12.75 9.15 84.03 0.77 -11.99 16 6 H 0.07 3.58 8.05 -2.91 -0.02 3.55 16 7 C -0.02 -0.91 3.61 84.86 0.31 -0.61 16 8 N -0.88 -45.20 8.68 21.65 0.19 -45.01 16 9 Si 0.89 41.85 29.67 68.60 2.04 43.88 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 13 C 0.15 6.73 4.88 85.63 0.42 7.15 16 14 C -0.07 -3.03 5.34 -19.84 -0.11 -3.14 16 15 C -0.08 -3.22 8.75 22.26 0.19 -3.03 16 16 C -0.16 -5.74 10.03 22.32 0.22 -5.51 16 17 C 0.09 2.87 7.30 22.37 0.16 3.04 16 18 F -0.14 -4.35 17.27 44.97 0.78 -3.58 16 19 C -0.15 -4.80 9.81 22.33 0.22 -4.59 16 20 C -0.01 -0.48 6.07 22.32 0.14 -0.34 16 21 Cl -0.05 -1.57 23.37 -2.72 -0.06 -1.64 16 22 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.05 1.81 6.69 -2.38 -0.02 1.80 16 26 H 0.04 1.42 7.95 -2.39 -0.02 1.40 16 27 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 2.27 5.97 -2.39 -0.01 2.25 16 29 H 0.25 12.58 8.05 -92.71 -0.75 11.83 16 30 H 0.05 1.83 6.78 -2.39 -0.02 1.82 16 31 H 0.12 5.68 4.90 -2.39 -0.01 5.67 16 32 H 0.14 6.21 5.14 -2.91 -0.01 6.20 16 33 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 34 H 0.16 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -51.90 290.72 5.86 -46.04 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.13 Total: 9.53 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.65 Total: -20.29 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -1.67 Total: -73.96 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.04 Total: 43.88 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.06 Total: -1.64 kcal Total: -51.90 5.86 -46.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373605.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.549 kcal (2) G-P(sol) polarization free energy of solvation -51.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds