Wall clock time and date at job start Mon Mar 30 2020 00:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36894 * 120.00078 * 2 1 4 4 H 1.08003 * 119.99848 * 137.83822 * 3 2 1 5 5 C 1.39020 * 120.00373 * 317.84309 * 3 2 1 6 6 N 1.31385 * 119.99843 * 44.08150 * 5 3 2 7 7 Si 1.86797 * 120.00239 * 224.08336 * 5 3 2 8 8 H 1.48507 * 109.46999 * 89.99749 * 7 5 3 9 9 H 1.48498 * 109.47506 * 209.99582 * 7 5 3 10 10 H 1.48500 * 109.47323 * 330.00049 * 7 5 3 11 11 C 1.34773 * 119.99813 * 180.02562 * 2 1 3 12 12 O 1.21624 * 120.00103 * 187.75925 * 11 2 1 13 13 C 1.47494 * 120.00330 * 7.76219 * 11 2 1 14 14 C 1.39794 * 120.09738 * 138.99224 * 13 11 2 15 15 C 1.37692 * 119.90798 * 180.02562 * 14 13 11 16 16 C 1.39013 * 120.09026 * 0.02587 * 15 14 13 17 17 O 1.35718 * 119.90071 * 179.97438 * 16 15 14 18 18 C 1.42903 * 116.99823 * 179.97438 * 17 16 15 19 19 F 1.39907 * 109.47074 * 300.00370 * 18 17 16 20 20 F 1.39894 * 109.46948 * 60.00033 * 18 17 16 21 21 C 1.39003 * 120.19210 * 0.22629 * 16 15 14 22 22 C 1.37692 * 120.09349 * 359.49468 * 21 16 15 23 23 H 1.09001 * 109.46722 * 278.75308 * 1 2 3 24 24 H 1.08998 * 109.47050 * 38.75201 * 1 2 3 25 25 H 1.09001 * 109.47082 * 158.75407 * 1 2 3 26 26 H 0.97006 * 119.99963 * 180.02562 * 6 5 3 27 27 H 1.08004 * 120.04797 * 0.02562 * 14 13 11 28 28 H 1.08001 * 119.95332 * 179.97438 * 15 14 13 29 29 H 1.08994 * 109.46846 * 180.02562 * 18 17 16 30 30 H 1.07999 * 119.95822 * 179.74506 * 21 16 15 31 31 H 1.07992 * 120.05155 * 180.23364 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1495 1.1855 0.0000 4 1 3.0200 1.3065 0.6278 5 6 1.7242 2.2338 -0.8080 6 7 0.4469 2.5333 -0.8773 7 14 2.9688 3.2165 -1.7952 8 1 3.1488 2.5894 -3.1293 9 1 2.4789 4.6081 -1.9645 10 1 4.2684 3.2333 -1.0768 11 6 2.1389 -1.1672 -0.0005 12 8 3.3468 -1.1721 0.1417 13 6 1.4116 -2.4386 -0.1736 14 6 1.9455 -3.4474 -0.9807 15 6 1.2630 -4.6326 -1.1400 16 6 0.0443 -4.8265 -0.4999 17 8 -0.6254 -5.9960 -0.6600 18 6 -1.8716 -6.1292 0.0266 19 9 -1.6611 -6.0019 1.4038 20 9 -2.7508 -5.1304 -0.4051 21 6 -0.4928 -3.8241 0.2993 22 6 0.1859 -2.6381 0.4686 23 1 -0.3633 0.1564 1.0157 24 1 -0.3633 0.8014 -0.6433 25 1 -0.3633 -0.9578 -0.3724 26 1 0.1500 3.2645 -1.4414 27 1 2.8921 -3.2974 -1.4787 28 1 1.6746 -5.4123 -1.7637 29 1 -2.3007 -7.1083 -0.1861 30 1 -1.4418 -3.9772 0.7916 31 1 -0.2302 -1.8612 1.0928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049141.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:26 Heat of formation + Delta-G solvation = -125.716628 kcal Electronic energy + Delta-G solvation = -20580.647204 eV Core-core repulsion = 16885.282286 eV Total energy + Delta-G solvation = -3695.364918 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.48598 -47.47589 -40.01417 -38.62466 -36.64019 -34.71308 -32.13878 -30.80684 -30.07207 -26.68897 -26.08361 -24.68641 -22.61415 -22.45012 -19.63699 -19.02983 -18.11253 -18.04397 -17.11424 -16.40533 -16.02951 -15.00762 -14.76473 -14.66140 -14.29227 -14.01631 -14.01121 -13.88623 -13.77598 -13.57911 -13.08125 -12.88950 -12.50597 -12.13647 -11.90145 -11.60135 -11.46312 -11.21047 -10.87849 -10.59465 -10.35529 -10.20025 -8.77436 -8.64424 -8.52498 -8.07657 -7.67974 -6.66807 -3.90024 1.32927 1.56390 2.47388 3.16193 3.28900 3.32376 3.34271 3.62900 4.06155 4.12620 4.29352 4.49005 4.63264 4.91732 4.96223 5.03571 5.40802 5.58469 5.60889 5.81189 6.17588 6.24259 6.39650 6.48745 6.65231 6.68865 6.82144 7.16841 7.20476 7.59785 8.26862 8.48720 9.10192 9.30672 9.97073 10.35967 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033575 B = 0.004695 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.762163 B = 5962.502700 C = 6357.638538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.433 5.433 3 C -0.348 4.348 4 H 0.098 0.902 5 C 0.075 3.925 6 N -0.824 5.824 7 Si 0.889 3.111 8 H -0.274 1.274 9 H -0.286 1.286 10 H -0.264 1.264 11 C 0.486 3.514 12 O -0.580 6.580 13 C -0.114 4.114 14 C -0.048 4.048 15 C -0.140 4.140 16 C 0.097 3.903 17 O -0.322 6.322 18 C 0.411 3.589 19 F -0.200 7.200 20 F -0.199 7.199 21 C -0.197 4.197 22 C -0.066 4.066 23 H 0.036 0.964 24 H 0.117 0.883 25 H 0.048 0.952 26 H 0.273 0.727 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.178 0.822 30 H 0.132 0.868 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 -15.019 -0.729 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.151 5.151 3 C -0.474 4.474 4 H 0.115 0.885 5 C -0.134 4.134 6 N -0.456 5.456 7 Si 0.713 3.287 8 H -0.200 1.200 9 H -0.213 1.213 10 H -0.188 1.188 11 C 0.276 3.724 12 O -0.466 6.466 13 C -0.118 4.118 14 C -0.067 4.067 15 C -0.159 4.159 16 C 0.054 3.946 17 O -0.240 6.240 18 C 0.321 3.679 19 F -0.181 7.181 20 F -0.180 7.180 21 C -0.215 4.215 22 C -0.084 4.084 23 H 0.054 0.946 24 H 0.134 0.866 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.156 0.844 28 H 0.151 0.849 29 H 0.195 0.805 30 H 0.149 0.851 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.629 -14.944 -0.798 16.798 hybrid contribution 0.023 0.705 -0.244 0.747 sum -7.605 -14.239 -1.042 16.177 Atomic orbital electron populations 1.22965 0.82549 1.02866 1.01774 1.43331 1.04995 1.04624 1.62124 1.19114 1.12175 0.90111 1.25958 0.88450 1.25522 0.95671 0.96844 0.95400 1.70027 1.16248 1.26421 1.32945 0.86572 0.83091 0.77633 0.81408 1.19952 1.21268 1.18815 1.17940 0.87063 0.83035 0.84396 1.90620 1.14045 1.86750 1.55147 1.20389 0.95563 0.96414 0.99431 1.20998 0.98968 0.90806 0.95905 1.20277 0.93443 0.98960 1.03181 1.18957 0.93078 0.84419 0.98119 1.86529 1.33016 1.36527 1.67959 1.23296 0.78856 0.91985 0.73767 1.93103 1.94594 1.96895 1.33542 1.93104 1.69717 1.65960 1.89264 1.21382 1.02268 0.94784 1.03111 1.21486 0.93286 0.96055 0.97612 0.94600 0.86569 0.93316 0.91610 0.84382 0.84877 0.80532 0.85056 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.93 8.57 59.85 0.51 1.45 16 2 N -0.43 -11.31 2.99 -123.40 -0.37 -11.68 16 3 C -0.35 -9.80 8.74 -15.00 -0.13 -9.93 16 4 H 0.10 2.89 7.94 -52.48 -0.42 2.47 16 5 C 0.08 1.99 5.32 -17.45 -0.09 1.89 16 6 N -0.82 -21.23 10.79 55.50 0.60 -20.63 16 7 Si 0.89 20.42 29.69 -169.99 -5.05 15.37 16 8 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 10 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 11 C 0.49 12.38 7.26 -12.49 -0.09 12.29 16 12 O -0.58 -16.62 16.84 5.26 0.09 -16.53 16 13 C -0.11 -2.36 5.30 -104.96 -0.56 -2.91 16 14 C -0.05 -0.85 9.64 -39.20 -0.38 -1.23 16 15 C -0.14 -2.13 9.97 -39.49 -0.39 -2.52 16 16 C 0.10 1.47 6.49 -39.01 -0.25 1.21 16 17 O -0.32 -3.95 10.42 -18.86 -0.20 -4.15 16 18 C 0.41 3.77 5.98 101.05 0.60 4.38 16 19 F -0.20 -2.20 15.59 2.25 0.04 -2.17 16 20 F -0.20 -2.21 15.55 2.25 0.04 -2.18 16 21 C -0.20 -3.12 8.23 -39.50 -0.33 -3.44 16 22 C -0.07 -1.18 7.34 -39.20 -0.29 -1.47 16 23 H 0.04 0.77 7.79 -51.93 -0.40 0.36 16 24 H 0.12 2.83 5.13 -51.93 -0.27 2.56 16 25 H 0.05 0.97 4.58 -51.93 -0.24 0.74 16 26 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 27 H 0.14 2.40 8.06 -52.48 -0.42 1.98 16 28 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 29 H 0.18 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.13 1.88 5.07 -52.49 -0.27 1.61 16 31 H 0.14 2.46 5.74 -52.49 -0.30 2.16 16 LS Contribution 274.83 15.07 4.14 4.14 Total: -1.00 -31.82 274.83 -4.40 -36.22 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -2.29 Total: 1.89 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -1.39 Total: -0.29 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.23 Total: -32.31 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.11 Total: -20.68 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.07 Total: -4.35 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.05 Total: 15.37 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.82 -4.40 -36.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049141.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.499 kcal (2) G-P(sol) polarization free energy of solvation -31.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds