Wall clock time and date at job start Mon Mar 30 2020 00:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36907 * 120.00273 * 2 1 4 4 H 1.07997 * 119.99762 * 187.79472 * 3 2 1 5 5 C 1.39027 * 119.99891 * 7.79066 * 3 2 1 6 6 N 1.31379 * 119.99917 * 7.90545 * 5 3 2 7 7 Si 1.86795 * 120.00144 * 187.90390 * 5 3 2 8 8 H 1.48501 * 109.47232 * 59.99943 * 7 5 3 9 9 H 1.48494 * 109.47316 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47140 * 300.00442 * 7 5 3 11 11 C 1.34774 * 119.99779 * 179.97438 * 2 1 3 12 12 O 1.21627 * 120.00081 * 183.69485 * 11 2 1 13 13 C 1.47428 * 120.00017 * 3.69856 * 11 2 1 14 14 C 1.39763 * 120.19908 * 305.96874 * 13 11 2 15 15 C 1.37770 * 119.90784 * 180.02562 * 14 13 11 16 16 C 1.38567 * 120.30182 * 359.97438 * 15 14 13 17 17 C 1.38078 * 120.40018 * 0.02562 * 16 15 14 18 18 C 1.38682 * 120.09206 * 0.02562 * 17 16 15 19 19 O 1.35657 * 120.15339 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99814 * 359.96191 * 19 18 17 21 21 F 1.39893 * 109.46900 * 299.99250 * 20 19 18 22 22 F 1.39898 * 109.46995 * 59.99714 * 20 19 18 23 23 H 1.08996 * 109.47129 * 174.13693 * 1 2 3 24 24 H 1.09005 * 109.46989 * 294.13720 * 1 2 3 25 25 H 1.09002 * 109.46978 * 54.13078 * 1 2 3 26 26 H 0.96999 * 120.00173 * 179.97438 * 6 5 3 27 27 H 1.08004 * 120.04925 * 359.97438 * 14 13 11 28 28 H 1.08001 * 119.85271 * 179.97438 * 15 14 13 29 29 H 1.08000 * 119.80131 * 179.74399 * 16 15 14 30 30 H 1.08003 * 119.95431 * 179.97438 * 17 16 15 31 31 H 1.09004 * 109.46801 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.2221 1.1898 -0.1268 5 6 1.4641 2.3841 0.1632 6 7 0.1871 2.3737 0.4718 7 14 2.3587 4.0091 -0.0561 8 1 2.9032 4.0922 -1.4352 9 1 1.4117 5.1301 0.1710 10 1 3.4727 4.0969 0.9219 11 6 2.1388 -1.1672 0.0005 12 8 3.3532 -1.1683 0.0684 13 6 1.4039 -2.4427 -0.0813 14 6 0.3851 -2.7268 0.8323 15 6 -0.2974 -3.9208 0.7507 16 6 0.0211 -4.8423 -0.2340 17 6 1.0253 -4.5745 -1.1430 18 6 1.7237 -3.3783 -1.0754 19 8 2.7102 -3.1137 -1.9682 20 6 2.9789 -4.1135 -2.9532 21 9 3.3543 -5.3030 -2.3199 22 9 1.8289 -4.3352 -3.7184 23 1 -0.3633 -1.0223 -0.1050 24 1 -0.3633 0.4203 0.9379 25 1 -0.3633 0.6022 -0.8328 26 1 -0.2911 3.2098 0.5860 27 1 0.1337 -2.0118 1.6017 28 1 -1.0843 -4.1397 1.4573 29 1 -0.5164 -5.7775 -0.2880 30 1 1.2679 -5.2980 -1.9073 31 1 3.7872 -3.7762 -3.6021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049143.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:28 Heat of formation + Delta-G solvation = -129.673089 kcal Electronic energy + Delta-G solvation = -21074.087861 eV Core-core repulsion = 17378.551379 eV Total energy + Delta-G solvation = -3695.536483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.28612 -47.26918 -39.98544 -38.06438 -36.93371 -34.66039 -31.86628 -30.58970 -30.00957 -26.42306 -25.92548 -24.78168 -22.84377 -22.12152 -19.78983 -18.59475 -17.84761 -17.81272 -17.00286 -16.39401 -15.92292 -15.18130 -14.75864 -14.48218 -14.32017 -14.05995 -13.76111 -13.60292 -13.57607 -13.46843 -12.84073 -12.54416 -12.43052 -11.88796 -11.77031 -11.44389 -11.30352 -11.01378 -10.81905 -10.74002 -10.41620 -10.22131 -9.07924 -8.66854 -8.39867 -8.09693 -7.84625 -6.27718 -3.82374 1.40710 1.57154 2.77135 3.17308 3.22680 3.27095 3.52437 3.70495 4.05570 4.16964 4.38880 4.72654 4.77621 5.01086 5.12119 5.21222 5.32556 5.56193 5.69975 5.77103 6.13181 6.37463 6.43171 6.52387 6.68381 6.86258 7.05078 7.29927 7.38782 7.54080 8.04758 8.47252 9.16310 9.40851 9.97542 10.66206 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.005963 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.071855 B = 4694.200590 C = 5351.161750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.433 5.433 3 C -0.298 4.298 4 H 0.105 0.895 5 C 0.027 3.973 6 N -0.883 5.883 7 Si 0.934 3.066 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.476 3.524 12 O -0.583 6.583 13 C -0.102 4.102 14 C -0.062 4.062 15 C -0.151 4.151 16 C -0.085 4.085 17 C -0.199 4.199 18 C 0.135 3.865 19 O -0.296 6.296 20 C 0.408 3.592 21 F -0.202 7.202 22 F -0.203 7.203 23 H 0.033 0.967 24 H 0.082 0.918 25 H 0.057 0.943 26 H 0.268 0.732 27 H 0.137 0.863 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -11.784 -4.400 12.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.150 5.150 3 C -0.426 4.426 4 H 0.123 0.877 5 C -0.175 4.175 6 N -0.524 5.524 7 Si 0.760 3.240 8 H -0.198 1.198 9 H -0.208 1.208 10 H -0.197 1.197 11 C 0.264 3.736 12 O -0.469 6.469 13 C -0.106 4.106 14 C -0.081 4.081 15 C -0.169 4.169 16 C -0.103 4.103 17 C -0.218 4.218 18 C 0.090 3.910 19 O -0.212 6.212 20 C 0.317 3.683 21 F -0.184 7.184 22 F -0.185 7.185 23 H 0.051 0.949 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.155 0.845 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.731 -11.437 -4.351 12.358 hybrid contribution 0.011 0.504 -0.230 0.554 sum -1.719 -10.933 -4.581 11.978 Atomic orbital electron populations 1.22018 0.80324 0.97223 1.04480 1.43607 1.06128 1.04578 1.60671 1.19786 0.94091 0.82029 1.46697 0.87696 1.25357 0.95931 0.99865 0.96391 1.70088 1.08429 1.27605 1.46249 0.85876 0.78805 0.80161 0.79158 1.19844 1.20842 1.19723 1.17494 0.87245 0.82637 0.86259 1.90621 1.13227 1.86521 1.56539 1.19653 0.98691 0.96381 0.95923 1.21269 0.92859 0.96692 0.97263 1.21011 1.01599 0.94390 0.99943 1.20912 0.96156 0.99064 0.94172 1.21384 1.00337 0.96655 1.03404 1.18828 0.88481 0.93873 0.89777 1.86790 1.52014 1.42015 1.40421 1.23439 0.85732 0.76104 0.82986 1.93071 1.91347 1.50354 1.83620 1.93074 1.54636 1.94722 1.76054 0.94863 0.89960 0.92456 0.92162 0.84497 0.85536 0.85730 0.85105 0.80403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.40 7.95 59.85 0.48 2.87 16 2 N -0.43 -11.54 3.02 -123.42 -0.37 -11.91 16 3 C -0.30 -8.45 9.53 -14.99 -0.14 -8.59 16 4 H 0.11 3.10 7.21 -52.49 -0.38 2.72 16 5 C 0.03 0.71 5.38 -17.45 -0.09 0.62 16 6 N -0.88 -23.17 9.66 55.50 0.54 -22.63 16 7 Si 0.93 20.78 29.56 -169.99 -5.02 15.76 16 8 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 C 0.48 12.42 6.79 -12.52 -0.08 12.34 16 12 O -0.58 -17.16 16.35 1.92 0.03 -17.13 16 13 C -0.10 -2.19 4.87 -104.85 -0.51 -2.70 16 14 C -0.06 -1.10 7.39 -39.18 -0.29 -1.39 16 15 C -0.15 -2.16 10.02 -39.63 -0.40 -2.56 16 16 C -0.08 -1.17 10.03 -39.52 -0.40 -1.57 16 17 C -0.20 -3.19 8.25 -39.48 -0.33 -3.51 16 18 C 0.14 2.63 6.48 -38.68 -0.25 2.38 16 19 O -0.30 -5.65 9.63 -22.01 -0.21 -5.86 16 20 C 0.41 5.43 5.98 101.05 0.60 6.04 16 21 F -0.20 -2.78 15.58 2.25 0.04 -2.74 16 22 F -0.20 -2.76 15.58 2.25 0.04 -2.72 16 23 H 0.03 0.67 4.60 -51.93 -0.24 0.43 16 24 H 0.08 1.98 6.74 -51.93 -0.35 1.63 16 25 H 0.06 1.40 7.43 -51.93 -0.39 1.01 16 26 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 27 H 0.14 2.35 7.35 -52.48 -0.39 1.97 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 30 H 0.13 1.89 5.10 -52.48 -0.27 1.62 16 31 H 0.18 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 274.38 15.07 4.13 4.13 Total: -1.00 -32.87 274.38 -4.66 -37.53 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -2.41 Total: 1.65 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.41 Total: 3.92 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.16 Total: -34.54 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.18 Total: -22.99 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.07 Total: -5.46 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.87 -4.66 -37.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049143.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.144 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds