Wall clock time and date at job start Mon Mar 30 2020 00:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36907 * 120.00273 * 2 1 4 4 H 1.07997 * 119.99762 * 187.79472 * 3 2 1 5 5 C 1.39027 * 119.99891 * 7.79066 * 3 2 1 6 6 N 1.31379 * 119.99917 * 7.90545 * 5 3 2 7 7 Si 1.86795 * 120.00144 * 187.90390 * 5 3 2 8 8 H 1.48501 * 109.47232 * 59.99943 * 7 5 3 9 9 H 1.48494 * 109.47316 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47140 * 300.00442 * 7 5 3 11 11 C 1.34774 * 119.99779 * 179.97438 * 2 1 3 12 12 O 1.21627 * 120.00081 * 183.69485 * 11 2 1 13 13 C 1.47428 * 120.00017 * 3.69856 * 11 2 1 14 14 C 1.39763 * 120.19908 * 305.96874 * 13 11 2 15 15 C 1.37770 * 119.90784 * 180.02562 * 14 13 11 16 16 C 1.38567 * 120.30182 * 359.97438 * 15 14 13 17 17 C 1.38078 * 120.40018 * 0.02562 * 16 15 14 18 18 C 1.38682 * 120.09206 * 0.02562 * 17 16 15 19 19 O 1.35657 * 120.15339 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99814 * 359.96191 * 19 18 17 21 21 F 1.39893 * 109.46900 * 299.99250 * 20 19 18 22 22 F 1.39898 * 109.46995 * 59.99714 * 20 19 18 23 23 H 1.08996 * 109.47129 * 174.13693 * 1 2 3 24 24 H 1.09005 * 109.46989 * 294.13720 * 1 2 3 25 25 H 1.09002 * 109.46978 * 54.13078 * 1 2 3 26 26 H 0.96999 * 120.00173 * 179.97438 * 6 5 3 27 27 H 1.08004 * 120.04925 * 359.97438 * 14 13 11 28 28 H 1.08001 * 119.85271 * 179.97438 * 15 14 13 29 29 H 1.08000 * 119.80131 * 179.74399 * 16 15 14 30 30 H 1.08003 * 119.95431 * 179.97438 * 17 16 15 31 31 H 1.09004 * 109.46801 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1856 0.0000 4 1 3.2221 1.1898 -0.1268 5 6 1.4641 2.3841 0.1632 6 7 0.1871 2.3737 0.4718 7 14 2.3587 4.0091 -0.0561 8 1 2.9032 4.0922 -1.4352 9 1 1.4117 5.1301 0.1710 10 1 3.4727 4.0969 0.9219 11 6 2.1388 -1.1672 0.0005 12 8 3.3532 -1.1683 0.0684 13 6 1.4039 -2.4427 -0.0813 14 6 0.3851 -2.7268 0.8323 15 6 -0.2974 -3.9208 0.7507 16 6 0.0211 -4.8423 -0.2340 17 6 1.0253 -4.5745 -1.1430 18 6 1.7237 -3.3783 -1.0754 19 8 2.7102 -3.1137 -1.9682 20 6 2.9789 -4.1135 -2.9532 21 9 3.3543 -5.3030 -2.3199 22 9 1.8289 -4.3352 -3.7184 23 1 -0.3633 -1.0223 -0.1050 24 1 -0.3633 0.4203 0.9379 25 1 -0.3633 0.6022 -0.8328 26 1 -0.2911 3.2098 0.5860 27 1 0.1337 -2.0118 1.6017 28 1 -1.0843 -4.1397 1.4573 29 1 -0.5164 -5.7775 -0.2880 30 1 1.2679 -5.2980 -1.9073 31 1 3.7872 -3.7762 -3.6021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049143.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:27 Heat of formation + Delta-G solvation = -151.616559 kcal Electronic energy + Delta-G solvation = -21075.039402 eV Core-core repulsion = 17378.551379 eV Total energy + Delta-G solvation = -3696.488023 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.35327 -48.33234 -41.45351 -39.80973 -38.29988 -36.71883 -33.80015 -32.11658 -31.28984 -28.32551 -27.13738 -26.62249 -24.38423 -23.40074 -21.41591 -19.86774 -19.13316 -18.94956 -18.92384 -18.11455 -17.16317 -16.92617 -16.22429 -16.07934 -15.73785 -15.55383 -15.29656 -14.94979 -14.93200 -14.67257 -14.42993 -13.95845 -13.69663 -13.61931 -13.40217 -13.06111 -12.84467 -12.63893 -12.60585 -12.25940 -12.12844 -12.06545 -11.09847 -10.51473 -9.93579 -9.88816 -9.44460 -8.29677 -5.95997 0.05660 0.29372 1.38204 1.39192 1.50685 1.64828 1.98029 2.23569 2.45999 2.66492 2.99452 3.13161 3.45905 3.67613 3.80397 3.82033 4.06961 4.20502 4.38713 4.45191 4.60029 4.85628 5.08279 5.13766 5.31487 5.38751 5.42679 5.45487 5.62449 5.95086 6.08246 6.43470 7.10158 7.39742 7.96512 8.62191 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024749 B = 0.005963 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.071855 B = 4694.200590 C = 5351.161750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.448 5.448 3 C -0.347 4.347 4 H 0.077 0.923 5 C -0.002 4.002 6 N -0.892 5.892 7 Si 0.997 3.003 8 H -0.271 1.271 9 H -0.264 1.264 10 H -0.273 1.273 11 C 0.470 3.530 12 O -0.633 6.633 13 C -0.148 4.148 14 C -0.069 4.069 15 C -0.136 4.136 16 C -0.064 4.064 17 C -0.201 4.201 18 C 0.118 3.882 19 O -0.334 6.334 20 C 0.406 3.594 21 F -0.204 7.204 22 F -0.204 7.204 23 H 0.064 0.936 24 H 0.072 0.928 25 H 0.040 0.960 26 H 0.275 0.725 27 H 0.134 0.866 28 H 0.171 0.829 29 H 0.173 0.827 30 H 0.147 0.853 31 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 -13.332 -4.611 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.165 5.165 3 C -0.474 4.474 4 H 0.095 0.905 5 C -0.204 4.204 6 N -0.531 5.531 7 Si 0.820 3.180 8 H -0.196 1.196 9 H -0.188 1.188 10 H -0.198 1.198 11 C 0.260 3.740 12 O -0.522 6.522 13 C -0.151 4.151 14 C -0.088 4.088 15 C -0.154 4.154 16 C -0.081 4.081 17 C -0.219 4.219 18 C 0.074 3.926 19 O -0.252 6.252 20 C 0.317 3.683 21 F -0.186 7.186 22 F -0.185 7.185 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.152 0.848 28 H 0.188 0.812 29 H 0.191 0.809 30 H 0.165 0.835 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.522 -13.002 -4.564 14.223 hybrid contribution 0.504 0.834 -0.169 0.989 sum -3.018 -12.168 -4.733 13.400 Atomic orbital electron populations 1.21870 0.78701 0.98721 1.03048 1.43832 1.07233 1.04510 1.60914 1.19749 0.93508 0.83921 1.50242 0.90515 1.26142 0.96824 1.02385 0.95048 1.70166 1.09023 1.28827 1.45088 0.84951 0.77919 0.76238 0.78938 1.19608 1.18805 1.19818 1.18311 0.87063 0.84141 0.84463 1.90546 1.15595 1.87695 1.58353 1.19453 1.01285 0.95023 0.99381 1.21371 0.92456 0.98447 0.96507 1.21454 1.01248 0.92411 1.00289 1.21529 0.94376 1.00259 0.91972 1.21667 1.00418 0.95458 1.04390 1.19096 0.89126 0.94613 0.89795 1.86747 1.52284 1.44675 1.41451 1.24136 0.86587 0.75313 0.82246 1.93057 1.91295 1.50426 1.83807 1.93063 1.55056 1.94656 1.75766 0.91797 0.90963 0.94139 0.91433 0.84810 0.81173 0.80914 0.83527 0.75945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.70 7.95 127.77 1.02 6.72 16 2 N -0.45 -25.06 3.02 -662.64 -2.00 -27.06 16 3 C -0.35 -20.67 9.53 84.09 0.80 -19.87 16 4 H 0.08 4.88 7.21 -2.91 -0.02 4.85 16 5 C 0.00 -0.13 5.38 84.95 0.46 0.33 16 6 N -0.89 -47.18 9.66 21.68 0.21 -46.97 16 7 Si 1.00 43.09 29.56 68.60 2.03 45.12 16 8 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 9 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 C 0.47 25.88 6.79 86.66 0.59 26.46 16 12 O -0.63 -39.72 16.35 -0.93 -0.02 -39.74 16 13 C -0.15 -6.42 4.87 -20.01 -0.10 -6.52 16 14 C -0.07 -2.37 7.39 22.53 0.17 -2.20 16 15 C -0.14 -3.34 10.02 22.24 0.22 -3.11 16 16 C -0.06 -1.46 10.03 22.31 0.22 -1.24 16 17 C -0.20 -5.90 8.25 22.34 0.18 -5.71 16 18 C 0.12 4.59 6.48 22.85 0.15 4.73 16 19 O -0.33 -12.97 9.63 -86.54 -0.83 -13.80 16 20 C 0.41 10.39 5.98 113.37 0.68 11.07 16 21 F -0.20 -5.32 15.58 44.97 0.70 -4.61 16 22 F -0.20 -5.20 15.58 44.97 0.70 -4.50 16 23 H 0.06 2.61 4.60 -2.39 -0.01 2.60 16 24 H 0.07 3.55 6.74 -2.38 -0.02 3.54 16 25 H 0.04 2.02 7.43 -2.39 -0.02 2.00 16 26 H 0.28 13.52 8.31 -92.71 -0.77 12.75 16 27 H 0.13 4.55 7.35 -2.91 -0.02 4.53 16 28 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.15 3.78 5.10 -2.91 -0.01 3.77 16 31 H 0.22 3.47 8.14 -2.38 -0.02 3.45 16 Total: -1.00 -76.46 274.38 6.36 -70.10 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.18 Total: 10.81 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 4.39 Total: 10.66 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -1.79 Total: -74.03 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -0.85 Total: -53.54 kcal Atomic # 9 Polarization: -10.52 SS G_CDS: 1.40 Total: -9.12 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -76.46 6.36 -70.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049143.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.514 kcal (2) G-P(sol) polarization free energy of solvation -76.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds