Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.52995 * 109.47356 * 66.04114 * 3 2 1 5 5 C 1.50699 * 109.47262 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99632 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99866 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00476 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99959 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46980 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46988 * 119.99848 * 9 7 5 12 12 H 1.48497 * 109.47273 * 239.99964 * 9 7 5 13 13 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 14 14 C 1.50703 * 109.47107 * 293.95458 * 13 2 1 15 15 C 1.38459 * 120.01976 * 89.99985 * 14 13 2 16 16 F 1.35096 * 120.01818 * 359.97438 * 15 14 13 17 17 C 1.38443 * 119.96169 * 179.97438 * 15 14 13 18 18 C 1.38231 * 120.00353 * 359.97438 * 17 15 14 19 19 C 1.38206 * 120.03621 * 359.97438 * 18 17 15 20 20 C 1.38291 * 120.01607 * 269.72112 * 14 13 2 21 21 Cl 1.73602 * 120.00435 * 0.02562 * 20 14 13 22 22 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 23 23 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 24 24 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 25 25 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 26 26 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 27 27 H 1.08998 * 109.47352 * 300.00633 * 4 3 2 28 28 H 1.09008 * 109.46769 * 60.00179 * 4 3 2 29 29 H 0.97001 * 120.00260 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47043 * 53.95437 * 13 2 1 31 31 H 1.09001 * 109.47354 * 173.95499 * 13 2 1 32 32 H 1.08003 * 120.00056 * 179.97438 * 17 15 14 33 33 H 1.07991 * 119.98233 * 180.02562 * 18 17 15 34 34 H 1.08000 * 119.98254 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 1.3181 5 6 2.1710 3.4646 1.3179 6 1 2.7184 3.8328 0.4628 7 6 1.9657 4.2818 2.4092 8 7 1.2995 3.8333 3.4506 9 14 2.6339 6.0263 2.4086 10 1 3.3402 6.2853 1.1282 11 1 1.5109 6.9865 2.5569 12 1 3.5812 6.1939 3.5398 13 6 1.9955 -0.7660 -1.1375 14 6 1.6370 -2.2205 -0.9727 15 6 0.4494 -2.7046 -1.4945 16 9 -0.3889 -1.8733 -2.1513 17 6 0.1215 -4.0411 -1.3429 18 6 0.9797 -4.8915 -0.6713 19 6 2.1657 -4.4085 -0.1513 20 6 2.4967 -3.0736 -0.3052 21 17 3.9891 -2.4690 0.3438 22 1 -0.3632 -1.0253 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4511 -0.9233 25 1 3.0797 1.3445 -0.1083 26 1 1.5611 1.9273 -0.8310 27 1 0.5472 2.0845 1.4264 28 1 2.0658 1.5016 2.1491 29 1 1.1548 4.4084 4.2182 30 1 1.5612 -0.3873 -2.0628 31 1 3.0798 -0.6612 -1.1755 32 1 -0.8049 -4.4193 -1.7493 33 1 0.7238 -5.9340 -0.5536 34 1 2.8358 -5.0738 0.3729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052922939.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = -28.629060 kcal Electronic energy + Delta-G solvation = -18367.292158 eV Core-core repulsion = 15240.306742 eV Total energy + Delta-G solvation = -3126.985415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.04272 -39.45728 -36.98890 -36.40674 -33.24122 -31.84300 -30.55692 -29.30074 -26.97712 -25.32456 -23.18277 -22.84707 -21.16151 -19.85654 -17.83925 -16.88653 -16.50527 -16.01536 -15.91853 -14.84616 -14.62762 -14.50634 -14.43869 -13.96391 -13.62771 -13.20933 -12.79704 -12.56159 -12.19441 -12.07159 -11.62040 -11.41786 -11.34890 -11.09271 -11.02594 -10.87600 -10.67811 -10.49912 -9.83660 -9.43208 -9.10697 -8.90203 -8.82542 -8.30439 -7.72052 -5.96809 -3.98992 0.86053 0.91152 2.07928 3.25855 3.33063 3.40395 3.44450 4.09798 4.40907 4.50381 4.58896 4.69261 4.77743 5.02747 5.28548 5.39177 5.45828 5.65604 5.78731 5.84164 5.87916 5.95875 6.00377 6.10439 6.31678 6.46111 6.54193 6.57460 6.98783 7.48732 7.54424 7.80910 7.93064 8.11328 8.46419 9.08468 9.64483 11.14636 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027340 B = 0.004464 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.911936 B = 6270.703115 C = 6843.108635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.530 5.530 3 C 0.064 3.936 4 C 0.029 3.971 5 C -0.520 4.520 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.086 3.914 14 C -0.095 4.095 15 C 0.115 3.885 16 F -0.131 7.131 17 C -0.154 4.154 18 C -0.085 4.085 19 C -0.124 4.124 20 C 0.008 3.992 21 Cl -0.043 7.043 22 H 0.051 0.949 23 H 0.080 0.920 24 H 0.021 0.979 25 H 0.062 0.938 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.025 0.975 29 H 0.259 0.741 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 -18.665 -9.800 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.254 5.254 3 C -0.062 4.062 4 C -0.009 4.009 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.042 4.042 14 C -0.097 4.097 15 C 0.095 3.905 16 F -0.109 7.109 17 C -0.173 4.173 18 C -0.104 4.104 19 C -0.143 4.143 20 C -0.020 4.020 21 Cl -0.014 7.014 22 H 0.070 0.930 23 H 0.099 0.901 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.141 -18.721 -9.167 20.845 hybrid contribution -0.058 1.553 -0.677 1.695 sum 0.082 -17.168 -9.844 19.790 Atomic orbital electron populations 1.22453 0.87934 1.00770 1.01191 1.62149 1.07671 1.16010 1.39532 1.22367 0.98602 0.84649 1.00593 1.19098 0.96932 0.93987 0.90857 1.21227 1.35061 0.97736 1.01903 0.92751 1.24983 0.95313 0.98419 0.95559 1.69983 1.40946 1.36288 1.06015 0.86555 0.78730 0.84839 0.77978 1.19776 1.21064 1.20995 1.21051 1.01565 0.87891 0.93705 1.19782 0.93339 0.97415 0.99210 1.17368 0.88677 0.88109 0.96357 1.91523 1.69678 1.71394 1.78313 1.21189 1.01818 0.91771 1.02528 1.20895 0.93013 0.99942 0.96511 1.21116 0.98103 0.93659 1.01434 1.20568 0.90010 0.93185 0.98197 1.98404 1.30647 1.88162 1.84206 0.93032 0.90125 0.96028 0.91989 0.96098 0.96434 0.95633 0.93082 0.93869 0.89071 0.84349 0.84278 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.22 60.07 0.49 0.94 16 2 N -0.53 -10.08 4.75 -244.37 -1.16 -11.24 16 3 C 0.06 1.39 4.90 -3.83 -0.02 1.38 16 4 C 0.03 0.76 4.90 -27.89 -0.14 0.62 16 5 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 6 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.09 1.37 4.57 -4.98 -0.02 1.34 16 14 C -0.10 -1.35 4.89 -104.52 -0.51 -1.86 16 15 C 0.11 1.49 5.93 -39.42 -0.23 1.25 16 16 F -0.13 -1.82 15.09 2.25 0.03 -1.79 16 17 C -0.15 -1.54 10.03 -39.51 -0.40 -1.94 16 18 C -0.09 -0.74 10.04 -39.60 -0.40 -1.13 16 19 C -0.12 -1.25 9.83 -39.54 -0.39 -1.64 16 20 C 0.01 0.10 6.31 -39.50 -0.25 -0.15 16 21 Cl -0.04 -0.59 27.29 -51.86 -1.42 -2.01 16 22 H 0.05 0.86 5.90 -51.93 -0.31 0.55 16 23 H 0.08 1.61 6.30 -51.93 -0.33 1.28 16 24 H 0.02 0.38 8.09 -51.93 -0.42 -0.04 16 25 H 0.06 1.32 7.93 -51.93 -0.41 0.91 16 26 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.02 0.49 6.47 -51.93 -0.34 0.15 16 28 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.04 0.68 7.62 -51.93 -0.40 0.28 16 31 H 0.09 1.42 6.68 -51.93 -0.35 1.07 16 32 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 300.97 15.07 4.54 4.54 Total: -1.00 -30.93 300.97 -8.76 -39.70 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: -4.20 Total: -4.78 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.27 Total: -14.83 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.43 Total: -37.70 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.03 Total: -1.79 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.42 Total: -2.01 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.93 -8.76 -39.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052922939.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.069 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds