Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.52995 * 109.47356 * 66.04114 * 3 2 1 5 5 C 1.50699 * 109.47262 * 180.02562 * 4 3 2 6 6 H 1.07998 * 119.99632 * 0.02562 * 5 4 3 7 7 C 1.37875 * 119.99866 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00476 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99959 * 180.02562 * 7 5 4 10 10 H 1.48507 * 109.46980 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46988 * 119.99848 * 9 7 5 12 12 H 1.48497 * 109.47273 * 239.99964 * 9 7 5 13 13 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 14 14 C 1.50703 * 109.47107 * 293.95458 * 13 2 1 15 15 C 1.38459 * 120.01976 * 89.99985 * 14 13 2 16 16 F 1.35096 * 120.01818 * 359.97438 * 15 14 13 17 17 C 1.38443 * 119.96169 * 179.97438 * 15 14 13 18 18 C 1.38231 * 120.00353 * 359.97438 * 17 15 14 19 19 C 1.38206 * 120.03621 * 359.97438 * 18 17 15 20 20 C 1.38291 * 120.01607 * 269.72112 * 14 13 2 21 21 Cl 1.73602 * 120.00435 * 0.02562 * 20 14 13 22 22 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 23 23 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 24 24 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 25 25 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 26 26 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 27 27 H 1.08998 * 109.47352 * 300.00633 * 4 3 2 28 28 H 1.09008 * 109.46769 * 60.00179 * 4 3 2 29 29 H 0.97001 * 120.00260 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47043 * 53.95437 * 13 2 1 31 31 H 1.09001 * 109.47354 * 173.95499 * 13 2 1 32 32 H 1.08003 * 120.00056 * 179.97438 * 17 15 14 33 33 H 1.07991 * 119.98233 * 180.02562 * 18 17 15 34 34 H 1.08000 * 119.98254 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 1.3181 5 6 2.1710 3.4646 1.3179 6 1 2.7184 3.8328 0.4628 7 6 1.9657 4.2818 2.4092 8 7 1.2995 3.8333 3.4506 9 14 2.6339 6.0263 2.4086 10 1 3.3402 6.2853 1.1282 11 1 1.5109 6.9865 2.5569 12 1 3.5812 6.1939 3.5398 13 6 1.9955 -0.7660 -1.1375 14 6 1.6370 -2.2205 -0.9727 15 6 0.4494 -2.7046 -1.4945 16 9 -0.3889 -1.8733 -2.1513 17 6 0.1215 -4.0411 -1.3429 18 6 0.9797 -4.8915 -0.6713 19 6 2.1657 -4.4085 -0.1513 20 6 2.4967 -3.0736 -0.3052 21 17 3.9891 -2.4690 0.3438 22 1 -0.3632 -1.0253 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4511 -0.9233 25 1 3.0797 1.3445 -0.1083 26 1 1.5611 1.9273 -0.8310 27 1 0.5472 2.0845 1.4264 28 1 2.0658 1.5016 2.1491 29 1 1.1548 4.4084 4.2182 30 1 1.5612 -0.3873 -2.0628 31 1 3.0798 -0.6612 -1.1755 32 1 -0.8049 -4.4193 -1.7493 33 1 0.7238 -5.9340 -0.5536 34 1 2.8358 -5.0738 0.3729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052922939.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = -47.010459 kcal Electronic energy + Delta-G solvation = -18368.089235 eV Core-core repulsion = 15240.306742 eV Total energy + Delta-G solvation = -3127.782493 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.03267 -40.41309 -38.45712 -37.38231 -35.27224 -33.20326 -31.44036 -31.07449 -28.32422 -27.11115 -24.74626 -23.77458 -22.40937 -21.59739 -18.77581 -18.59175 -17.83584 -17.18495 -16.95438 -16.48196 -16.10305 -15.95962 -15.74259 -15.19868 -14.63024 -14.47014 -14.26961 -13.99490 -13.90766 -13.34372 -13.07848 -12.87631 -12.63479 -12.60651 -12.44947 -12.33787 -12.27375 -11.85645 -11.73304 -11.37931 -11.24426 -10.54843 -9.90362 -9.70099 -9.24792 -8.19994 -6.31303 0.00415 0.02991 1.12642 1.39934 1.40396 1.53756 2.37117 2.42996 3.13185 3.13657 3.22687 3.55109 3.72782 3.91572 4.21463 4.25361 4.30692 4.41405 4.46033 4.56820 4.65660 4.72580 4.87077 4.95146 5.04597 5.09127 5.16117 5.23126 5.44706 5.63909 5.73767 5.76818 6.04566 6.15379 6.29822 6.85567 7.37709 8.92479 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027340 B = 0.004464 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.911936 B = 6270.703115 C = 6843.108635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.539 5.539 3 C 0.081 3.919 4 C 0.039 3.961 5 C -0.544 4.544 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.932 5.932 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.277 1.277 13 C 0.091 3.909 14 C -0.120 4.120 15 C 0.095 3.905 16 F -0.142 7.142 17 C -0.146 4.146 18 C -0.068 4.068 19 C -0.120 4.120 20 C -0.008 4.008 21 Cl -0.061 7.061 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.025 0.975 25 H 0.065 0.935 26 H 0.021 0.979 27 H -0.005 1.005 28 H -0.008 1.008 29 H 0.264 0.736 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.166 0.834 33 H 0.183 0.817 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.058 -20.156 -10.616 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.263 5.263 3 C -0.046 4.046 4 C 0.001 3.999 5 C -0.582 4.582 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.203 1.203 12 H -0.203 1.203 13 C -0.036 4.036 14 C -0.122 4.122 15 C 0.075 3.925 16 F -0.121 7.121 17 C -0.165 4.165 18 C -0.085 4.085 19 C -0.139 4.139 20 C -0.035 4.035 21 Cl -0.032 7.032 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.013 0.987 28 H 0.011 0.989 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.184 0.816 33 H 0.200 0.800 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.153 -20.228 -10.000 22.566 hybrid contribution -0.106 1.869 -0.426 1.920 sum 0.047 -18.360 -10.426 21.113 Atomic orbital electron populations 1.22331 0.87571 1.01334 1.00145 1.62037 1.08066 1.14435 1.41772 1.21999 0.98780 0.86126 0.97734 1.18902 0.95050 0.93674 0.92259 1.21639 1.35353 0.98852 1.02356 0.92196 1.25948 0.95381 1.03234 0.94983 1.70118 1.42064 1.38197 1.06785 0.85383 0.78200 0.78864 0.78484 1.18578 1.20316 1.20298 1.20975 1.01312 0.89116 0.92235 1.19652 0.94816 0.96242 1.01535 1.17651 0.88396 0.89316 0.97133 1.91490 1.69918 1.72018 1.78673 1.21581 1.02908 0.90389 1.01610 1.21417 0.91434 1.01652 0.94042 1.21495 0.98996 0.92586 1.00816 1.20769 0.89501 0.94368 0.98901 1.98394 1.31722 1.88562 1.84503 0.91351 0.92678 0.95653 0.91686 0.96061 0.98680 0.98926 0.92757 0.93911 0.89156 0.81624 0.79956 0.81994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.28 8.22 127.69 1.05 2.33 16 2 N -0.54 -21.02 4.75 -927.03 -4.41 -25.42 16 3 C 0.08 3.61 4.90 86.30 0.42 4.03 16 4 C 0.04 2.14 4.90 29.85 0.15 2.28 16 5 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 6 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.00 0.14 5.46 84.65 0.46 0.61 16 8 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 9 Si 0.97 45.10 29.54 68.60 2.03 47.12 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 C 0.09 2.93 4.57 85.56 0.39 3.32 16 14 C -0.12 -3.32 4.89 -19.80 -0.10 -3.41 16 15 C 0.09 2.31 5.93 22.37 0.13 2.44 16 16 F -0.14 -3.85 15.09 44.97 0.68 -3.18 16 17 C -0.15 -2.42 10.03 22.32 0.22 -2.20 16 18 C -0.07 -0.87 10.04 22.26 0.22 -0.65 16 19 C -0.12 -2.06 9.83 22.30 0.22 -1.84 16 20 C -0.01 -0.20 6.31 22.32 0.14 -0.06 16 21 Cl -0.06 -1.65 27.29 -2.72 -0.07 -1.72 16 22 H 0.07 2.29 5.90 -2.38 -0.01 2.28 16 23 H 0.05 2.31 6.30 -2.39 -0.02 2.29 16 24 H 0.02 0.91 8.09 -2.39 -0.02 0.89 16 25 H 0.06 2.83 7.93 -2.39 -0.02 2.82 16 26 H 0.02 0.94 8.12 -2.38 -0.02 0.92 16 27 H -0.01 -0.30 6.47 -2.39 -0.02 -0.32 16 28 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 29 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.04 1.36 7.62 -2.39 -0.02 1.34 16 31 H 0.09 2.86 6.68 -2.39 -0.02 2.85 16 32 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 Total: -1.00 -68.46 300.97 3.16 -65.30 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: 1.10 Total: 0.32 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 3.55 Total: -24.74 kcal Atomic # 7 Polarization: -78.98 SS G_CDS: -4.12 Total: -83.11 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.68 Total: -3.18 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.07 Total: -1.72 kcal Total: -68.46 3.16 -65.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052922939.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.292 kcal (2) G-P(sol) polarization free energy of solvation -68.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds