Wall clock time and date at job start Mon Mar 30 2020 01:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47378 * 2 1 4 4 H 1.09005 * 109.47448 * 54.77811 * 3 2 1 5 5 C 1.50700 * 109.47643 * 174.78312 * 3 2 1 6 6 H 1.07992 * 120.00003 * 119.99753 * 5 3 2 7 7 C 1.37880 * 119.99651 * 299.99662 * 5 3 2 8 8 N 1.31510 * 119.99571 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00048 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47240 * 89.99668 * 9 7 5 11 11 H 1.48495 * 109.47094 * 210.00007 * 9 7 5 12 12 H 1.48503 * 109.47139 * 330.00033 * 9 7 5 13 13 N 1.46905 * 109.47016 * 294.78343 * 3 2 1 14 14 C 1.46900 * 111.00403 * 154.12238 * 13 3 2 15 15 C 1.50692 * 109.47253 * 185.61758 * 14 13 3 16 16 C 1.38265 * 119.97340 * 90.00066 * 15 14 13 17 17 C 1.38192 * 120.04902 * 179.97438 * 16 15 14 18 18 C 1.38444 * 119.98995 * 359.97438 * 17 16 15 19 19 F 1.35103 * 120.02835 * 179.97438 * 18 17 16 20 20 C 1.38540 * 119.93994 * 0.02562 * 18 17 16 21 21 Cl 1.73595 * 120.02836 * 179.97438 * 20 18 17 22 22 C 1.38226 * 119.96927 * 269.72472 * 15 14 13 23 23 H 1.08997 * 109.46695 * 60.09763 * 1 2 3 24 24 H 1.09002 * 109.46744 * 180.09262 * 1 2 3 25 25 H 1.08992 * 109.47429 * 300.09245 * 1 2 3 26 26 H 1.08996 * 109.47682 * 239.99757 * 2 1 3 27 27 H 1.09005 * 109.46771 * 119.99718 * 2 1 3 28 28 H 0.97004 * 119.99943 * 180.02562 * 8 7 5 29 29 H 1.00902 * 110.99787 * 278.08068 * 13 3 2 30 30 H 1.09000 * 109.46617 * 305.61539 * 14 13 3 31 31 H 1.09001 * 109.46760 * 65.61473 * 14 13 3 32 32 H 1.07994 * 119.97110 * 359.97438 * 16 15 14 33 33 H 1.08006 * 120.00494 * 180.02562 * 17 16 15 34 34 H 1.08001 * 119.98629 * 359.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6024 1.9827 0.8395 5 6 3.5415 1.4445 0.1292 6 1 4.1495 1.8880 -0.6453 7 6 4.1389 0.8800 1.2363 8 7 5.4492 0.8814 1.3487 9 14 3.0872 0.1122 2.5756 10 1 2.8674 -1.3243 2.2699 11 1 3.7797 0.2399 3.8829 12 1 1.7782 0.8107 2.6385 13 7 1.6559 2.0976 -1.2575 14 6 1.5563 3.5529 -1.0839 15 6 1.0288 4.1750 -2.3510 16 6 -0.3332 4.3352 -2.5269 17 6 -0.8186 4.9060 -3.6881 18 6 0.0593 5.3183 -4.6759 19 9 -0.4144 5.8760 -5.8117 20 6 1.4240 5.1576 -4.4992 21 17 2.5268 5.6733 -5.7367 22 6 1.9074 4.5903 -3.3340 23 1 -0.3632 0.5123 -0.8909 24 1 -0.3633 -1.0277 0.0017 25 1 -0.3634 0.5152 0.8891 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.8696 0.4839 2.1274 29 1 2.3006 1.8651 -1.9980 30 1 0.8776 3.7749 -0.2603 31 1 2.5425 3.9607 -0.8621 32 1 -1.0182 4.0140 -1.7562 33 1 -1.8827 5.0311 -3.8245 34 1 2.9713 4.4691 -3.1934 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053156147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:03 Heat of formation + Delta-G solvation = -49.690169 kcal Electronic energy + Delta-G solvation = -18144.169508 eV Core-core repulsion = 15016.270815 eV Total energy + Delta-G solvation = -3127.898694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.98884 -40.36175 -38.16095 -37.53354 -34.65452 -33.73735 -31.96553 -31.26540 -28.77448 -25.94439 -24.21599 -24.03222 -22.32965 -21.63822 -19.11897 -18.78487 -17.67869 -17.11115 -16.99698 -16.78847 -15.96317 -15.51822 -15.16801 -14.91485 -14.84668 -14.52209 -14.24751 -14.09778 -13.72965 -13.47235 -13.16779 -12.92230 -12.69013 -12.44920 -12.39478 -12.20843 -12.10204 -11.88528 -11.53481 -11.28260 -11.15763 -10.68415 -10.00832 -9.63286 -9.08393 -8.31550 -6.36811 -0.05653 0.08213 0.95565 1.33241 1.37391 1.47943 2.31759 2.41248 3.04823 3.05707 3.53429 3.68907 3.90761 4.08312 4.19740 4.40704 4.48462 4.51703 4.70922 4.75486 4.82318 4.89489 4.96066 5.00211 5.10872 5.21135 5.32650 5.48719 5.50306 5.53103 5.69001 5.71222 6.08315 6.39277 6.61611 6.78325 7.32473 8.84662 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027356 B = 0.004451 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.280236 B = 6289.731766 C = 7010.542844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C 0.190 3.810 4 H 0.033 0.967 5 C -0.546 4.546 6 H 0.034 0.966 7 C 0.015 3.985 8 N -0.948 5.948 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.304 1.304 12 H -0.241 1.241 13 N -0.662 5.662 14 C 0.102 3.898 15 C -0.069 4.069 16 C -0.060 4.060 17 C -0.131 4.131 18 C 0.089 3.911 19 F -0.136 7.136 20 C -0.082 4.082 21 Cl -0.061 7.061 22 C -0.086 4.086 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.332 0.668 30 H 0.089 0.911 31 H 0.024 0.976 32 H 0.164 0.836 33 H 0.174 0.826 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.660 7.455 -8.536 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.080 3.920 4 H 0.051 0.949 5 C -0.585 4.585 6 H 0.052 0.948 7 C -0.183 4.183 8 N -0.588 5.588 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.232 1.232 12 H -0.164 1.164 13 N -0.290 5.290 14 C -0.027 4.027 15 C -0.070 4.070 16 C -0.078 4.078 17 C -0.150 4.150 18 C 0.069 3.931 19 F -0.114 7.114 20 C -0.110 4.110 21 Cl -0.032 7.032 22 C -0.105 4.105 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.108 0.892 31 H 0.042 0.958 32 H 0.181 0.819 33 H 0.191 0.809 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.124 7.377 -8.493 18.849 hybrid contribution 1.755 -0.031 0.321 1.784 sum -13.369 7.346 -8.172 17.306 Atomic orbital electron populations 1.21647 0.94307 1.01005 1.02214 1.21760 0.96710 0.97605 0.99532 1.19470 0.91074 0.92170 0.89290 0.94878 1.22092 0.92998 1.37727 1.05655 0.94784 1.25866 0.95751 0.96071 1.00617 1.70069 1.11124 1.46935 1.30697 0.85831 0.79707 0.79559 0.77178 1.19541 1.23210 1.16417 1.60840 1.54064 1.06484 1.07619 1.20788 0.99219 0.88629 0.94057 1.19922 0.94007 0.97554 0.95500 1.21273 0.94478 0.94853 0.97196 1.21410 1.01210 0.99976 0.92366 1.17612 0.90377 1.00209 0.84888 1.91507 1.88618 1.82895 1.48402 1.21012 0.89655 1.06762 0.93548 1.98372 1.62525 1.89436 1.52856 1.20951 1.01174 0.97191 0.91187 0.90878 0.92892 0.93575 0.92980 0.95070 0.92681 0.85178 0.89239 0.95776 0.81892 0.80903 0.84822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.80 71.98 0.71 -3.40 16 2 C -0.12 -4.62 5.11 30.59 0.16 -4.47 16 3 C 0.19 8.01 1.57 44.17 0.07 8.08 16 4 H 0.03 1.43 6.75 -2.38 -0.02 1.41 16 5 C -0.55 -29.17 9.06 25.60 0.23 -28.94 16 6 H 0.03 2.03 7.97 -2.91 -0.02 2.00 16 7 C 0.02 0.84 5.45 84.66 0.46 1.30 16 8 N -0.95 -57.97 13.96 21.45 0.30 -57.67 16 9 Si 0.95 43.41 24.41 68.60 1.67 45.09 16 10 H -0.27 -11.86 6.83 99.48 0.68 -11.18 16 11 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 12 H -0.24 -9.97 6.53 99.48 0.65 -9.32 16 13 N -0.66 -23.33 5.67 -499.46 -2.83 -26.16 16 14 C 0.10 3.14 5.64 85.55 0.48 3.62 16 15 C -0.07 -1.75 5.44 -19.86 -0.11 -1.86 16 16 C -0.06 -1.19 9.70 22.27 0.22 -0.97 16 17 C -0.13 -2.42 10.03 22.31 0.22 -2.20 16 18 C 0.09 2.07 7.28 22.39 0.16 2.24 16 19 F -0.14 -3.26 16.84 44.97 0.76 -2.50 16 20 C -0.08 -2.10 6.33 22.36 0.14 -1.96 16 21 Cl -0.06 -1.53 28.62 -2.72 -0.08 -1.61 16 22 C -0.09 -2.27 9.48 22.29 0.21 -2.06 16 23 H 0.07 2.09 7.76 -2.39 -0.02 2.07 16 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.03 1.31 3.21 -2.38 -0.01 1.30 16 28 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 29 H 0.33 12.43 8.45 -89.69 -0.76 11.68 16 30 H 0.09 2.52 7.86 -2.39 -0.02 2.50 16 31 H 0.02 0.86 8.06 -2.39 -0.02 0.84 16 32 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 33 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -61.09 301.80 3.05 -58.03 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.27 Total: 15.42 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: 2.95 Total: -30.60 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -2.53 Total: -83.83 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.76 Total: -2.50 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.67 Total: 45.09 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -61.09 3.05 -58.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053156147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.345 kcal (2) G-P(sol) polarization free energy of solvation -61.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds