Wall clock time and date at job start Mon Mar 30 2020 01:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 H 1.08999 * 109.47057 * 175.53410 * 3 2 1 5 5 C 1.50702 * 109.47036 * 55.53408 * 3 2 1 6 6 H 1.08001 * 119.99442 * 239.99526 * 5 3 2 7 7 C 1.37873 * 120.00183 * 60.00002 * 5 3 2 8 8 N 1.31514 * 119.99949 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47261 * 270.00294 * 9 7 5 11 11 H 1.48503 * 109.47007 * 30.00144 * 9 7 5 12 12 H 1.48494 * 109.47259 * 149.99760 * 9 7 5 13 13 N 1.46902 * 109.47112 * 295.53278 * 3 2 1 14 14 C 1.46898 * 110.99607 * 273.90721 * 13 3 2 15 15 C 1.50703 * 109.46670 * 176.24598 * 14 13 3 16 16 C 1.38268 * 119.96897 * 90.00324 * 15 14 13 17 17 C 1.38195 * 120.04896 * 179.97438 * 16 15 14 18 18 C 1.38440 * 119.98677 * 359.97438 * 17 16 15 19 19 F 1.35104 * 120.02783 * 179.97438 * 18 17 16 20 20 C 1.38550 * 119.94191 * 0.02562 * 18 17 16 21 21 Cl 1.73603 * 120.02500 * 179.97438 * 20 18 17 22 22 C 1.38213 * 119.97305 * 269.72131 * 15 14 13 23 23 H 1.08998 * 109.47469 * 185.26379 * 1 2 3 24 24 H 1.09008 * 109.46869 * 305.26529 * 1 2 3 25 25 H 1.08998 * 109.46967 * 65.25941 * 1 2 3 26 26 H 1.08994 * 109.46949 * 239.99850 * 2 1 3 27 27 H 1.09003 * 109.46783 * 119.99538 * 2 1 3 28 28 H 0.97003 * 120.00072 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99769 * 37.86112 * 13 3 2 30 30 H 1.08994 * 109.47388 * 296.24242 * 14 13 3 31 31 H 1.09006 * 109.47439 * 56.25284 * 14 13 3 32 32 H 1.08000 * 119.97252 * 359.97438 * 16 15 14 33 33 H 1.08003 * 120.00310 * 179.97438 * 17 16 15 34 34 H 1.08004 * 119.98877 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 0.0800 5 6 1.4494 2.1841 1.1714 6 1 0.8384 3.0588 1.0042 7 6 1.6892 1.7461 2.4565 8 7 1.1741 2.3936 3.4788 9 14 2.7456 0.2329 2.7457 10 1 1.8844 -0.9768 2.7596 11 1 3.7486 0.1140 1.6571 12 1 3.4437 0.3585 4.0503 13 7 1.6404 2.1032 -1.2497 14 6 2.6193 1.8497 -2.3154 15 6 2.1311 2.4638 -3.6022 16 6 2.4701 3.7665 -3.9180 17 6 2.0238 4.3311 -5.0978 18 6 1.2371 3.5918 -5.9644 19 9 0.7999 4.1431 -7.1178 20 6 0.8977 2.2865 -5.6475 21 17 -0.0892 1.3576 -6.7324 22 6 1.3498 1.7224 -4.4683 23 1 -0.3634 -1.0233 0.0943 24 1 -0.3633 0.5934 0.8391 25 1 -0.3633 0.4301 -0.9333 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3431 2.0856 4.3830 29 1 0.7157 1.8142 -1.5318 30 1 3.5769 2.2925 -2.0419 31 1 2.7408 0.7747 -2.4491 32 1 3.0841 4.3433 -3.2422 33 1 2.2887 5.3489 -5.3435 34 1 1.0891 0.7035 -4.2224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053156151.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:05 Heat of formation + Delta-G solvation = -27.183527 kcal Electronic energy + Delta-G solvation = -18210.347298 eV Core-core repulsion = 15083.424566 eV Total energy + Delta-G solvation = -3126.922732 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.04546 -39.43666 -37.00738 -36.52642 -33.15622 -31.68821 -31.06509 -29.79781 -26.97420 -24.59539 -23.25101 -23.24422 -21.43179 -19.61657 -17.90414 -16.82911 -16.64262 -15.92978 -15.85094 -15.18319 -14.82176 -14.16060 -14.04006 -13.83773 -13.60101 -13.26829 -13.02410 -12.66298 -12.42718 -12.23381 -11.96337 -11.51891 -11.39037 -11.15719 -10.98118 -10.78551 -10.57705 -10.46402 -9.93074 -9.45391 -9.19435 -9.11317 -8.68001 -8.56475 -7.51967 -6.07600 -4.04051 0.87587 0.96998 1.86990 3.23091 3.31445 3.33310 3.35480 3.96768 4.37256 4.50785 4.66918 4.99395 5.06754 5.16059 5.22744 5.38918 5.70304 5.71910 5.78434 5.87018 5.91820 5.99458 6.00471 6.13053 6.43367 6.49059 6.59774 6.71678 6.75185 6.92405 7.22967 7.65552 7.81553 8.20689 8.64701 9.03945 9.54778 11.05683 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031639 B = 0.004260 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.768194 B = 6571.958872 C = 6992.206936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.159 4.159 3 C 0.185 3.815 4 H 0.035 0.965 5 C -0.491 4.491 6 H 0.082 0.918 7 C 0.070 3.930 8 N -0.900 5.900 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.270 1.270 12 H -0.297 1.297 13 N -0.665 5.665 14 C 0.091 3.909 15 C -0.066 4.066 16 C -0.063 4.063 17 C -0.142 4.142 18 C 0.099 3.901 19 F -0.132 7.132 20 C -0.073 4.073 21 Cl -0.058 7.058 22 C -0.081 4.081 23 H 0.031 0.969 24 H 0.081 0.919 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.050 0.950 28 H 0.263 0.737 29 H 0.334 0.666 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.801 -1.204 -17.681 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.077 3.923 4 H 0.052 0.948 5 C -0.530 4.530 6 H 0.100 0.900 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.195 1.195 12 H -0.224 1.224 13 N -0.297 5.297 14 C -0.038 4.038 15 C -0.067 4.067 16 C -0.082 4.082 17 C -0.161 4.161 18 C 0.079 3.921 19 F -0.111 7.111 20 C -0.100 4.100 21 Cl -0.029 7.029 22 C -0.100 4.100 23 H 0.050 0.950 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.153 0.847 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.958 -0.649 -17.434 17.556 hybrid contribution 0.141 -1.884 -0.234 1.904 sum 2.098 -2.534 -17.668 17.972 Atomic orbital electron populations 1.21656 0.95728 0.99740 1.02471 1.22505 0.97326 1.01006 0.99018 1.19734 0.96019 0.88221 0.88375 0.94763 1.20865 1.31412 1.12796 0.87896 0.89982 1.24888 0.95536 0.96586 0.96119 1.69876 1.45045 1.40228 0.98670 0.86978 0.81118 0.83917 0.76901 1.20638 1.19546 1.22425 1.60791 1.03924 1.62624 1.02321 1.20995 0.97555 0.97275 0.87943 1.20068 0.96557 0.94153 0.95956 1.21110 0.97862 0.94322 0.94899 1.21149 0.99348 1.00906 0.94727 1.17403 0.99432 0.90838 0.84473 1.91518 1.87846 1.85318 1.46374 1.20918 1.01752 0.92058 0.95309 1.98376 1.68516 1.72680 1.63361 1.20916 0.96813 1.00864 0.91426 0.95000 0.89975 0.94099 0.94877 0.93176 0.92675 0.84708 0.90022 0.94822 0.83853 0.83881 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.40 37.16 0.35 -2.30 16 2 C -0.16 -3.22 5.23 -26.73 -0.14 -3.36 16 3 C 0.19 4.05 1.92 -68.86 -0.13 3.92 16 4 H 0.03 0.78 6.89 -51.93 -0.36 0.42 16 5 C -0.49 -13.02 7.86 -34.44 -0.27 -13.29 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 7 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 8 N -0.90 -26.67 13.96 55.43 0.77 -25.89 16 9 Si 0.88 21.12 24.33 -169.99 -4.14 16.98 16 10 H -0.28 -6.58 6.91 56.52 0.39 -6.18 16 11 H -0.27 -6.18 6.53 56.52 0.37 -5.81 16 12 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 13 N -0.67 -12.34 6.25 -109.22 -0.68 -13.02 16 14 C 0.09 1.35 5.60 -4.98 -0.03 1.32 16 15 C -0.07 -0.85 5.35 -104.62 -0.56 -1.41 16 16 C -0.06 -0.74 9.70 -39.59 -0.38 -1.12 16 17 C -0.14 -1.56 10.03 -39.52 -0.40 -1.96 16 18 C 0.10 1.22 7.28 -39.39 -0.29 0.93 16 19 F -0.13 -1.68 16.84 2.25 0.04 -1.64 16 20 C -0.07 -0.91 6.33 -39.44 -0.25 -1.16 16 21 Cl -0.06 -0.69 28.62 -51.86 -1.48 -2.17 16 22 C -0.08 -0.99 9.48 -39.56 -0.38 -1.37 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 1.81 6.89 -51.92 -0.36 1.46 16 25 H 0.04 0.69 6.61 -51.93 -0.34 0.35 16 26 H 0.03 0.58 7.40 -51.93 -0.38 0.20 16 27 H 0.05 1.09 3.39 -51.93 -0.18 0.91 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.33 5.98 6.54 -39.29 -0.26 5.73 16 30 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.03 0.48 7.32 -51.93 -0.38 0.10 16 32 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 33 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 295.95 15.07 4.46 4.46 Total: -1.00 -28.37 295.95 -7.57 -35.93 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -3.97 Total: 3.32 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -2.57 Total: -17.97 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.09 Total: -38.92 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.14 Total: 16.98 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.17 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.37 -7.57 -35.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053156151.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.751 kcal (2) G-P(sol) polarization free energy of solvation -28.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds