Wall clock time and date at job start Mon Mar 30 2020 01:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47177 * 2 1 4 4 H 1.08999 * 109.47057 * 175.53410 * 3 2 1 5 5 C 1.50702 * 109.47036 * 55.53408 * 3 2 1 6 6 H 1.08001 * 119.99442 * 239.99526 * 5 3 2 7 7 C 1.37873 * 120.00183 * 60.00002 * 5 3 2 8 8 N 1.31514 * 119.99949 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00153 * 359.97438 * 7 5 3 10 10 H 1.48495 * 109.47261 * 270.00294 * 9 7 5 11 11 H 1.48503 * 109.47007 * 30.00144 * 9 7 5 12 12 H 1.48494 * 109.47259 * 149.99760 * 9 7 5 13 13 N 1.46902 * 109.47112 * 295.53278 * 3 2 1 14 14 C 1.46898 * 110.99607 * 273.90721 * 13 3 2 15 15 C 1.50703 * 109.46670 * 176.24598 * 14 13 3 16 16 C 1.38268 * 119.96897 * 90.00324 * 15 14 13 17 17 C 1.38195 * 120.04896 * 179.97438 * 16 15 14 18 18 C 1.38440 * 119.98677 * 359.97438 * 17 16 15 19 19 F 1.35104 * 120.02783 * 179.97438 * 18 17 16 20 20 C 1.38550 * 119.94191 * 0.02562 * 18 17 16 21 21 Cl 1.73603 * 120.02500 * 179.97438 * 20 18 17 22 22 C 1.38213 * 119.97305 * 269.72131 * 15 14 13 23 23 H 1.08998 * 109.47469 * 185.26379 * 1 2 3 24 24 H 1.09008 * 109.46869 * 305.26529 * 1 2 3 25 25 H 1.08998 * 109.46967 * 65.25941 * 1 2 3 26 26 H 1.08994 * 109.46949 * 239.99850 * 2 1 3 27 27 H 1.09003 * 109.46783 * 119.99538 * 2 1 3 28 28 H 0.97003 * 120.00072 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99769 * 37.86112 * 13 3 2 30 30 H 1.08994 * 109.47388 * 296.24242 * 14 13 3 31 31 H 1.09006 * 109.47439 * 56.25284 * 14 13 3 32 32 H 1.08000 * 119.97252 * 359.97438 * 16 15 14 33 33 H 1.08003 * 120.00310 * 179.97438 * 17 16 15 34 34 H 1.08004 * 119.98877 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4435 0.0800 5 6 1.4494 2.1841 1.1714 6 1 0.8384 3.0588 1.0042 7 6 1.6892 1.7461 2.4565 8 7 1.1741 2.3936 3.4788 9 14 2.7456 0.2329 2.7457 10 1 1.8844 -0.9768 2.7596 11 1 3.7486 0.1140 1.6571 12 1 3.4437 0.3585 4.0503 13 7 1.6404 2.1032 -1.2497 14 6 2.6193 1.8497 -2.3154 15 6 2.1311 2.4638 -3.6022 16 6 2.4701 3.7665 -3.9180 17 6 2.0238 4.3311 -5.0978 18 6 1.2371 3.5918 -5.9644 19 9 0.7999 4.1431 -7.1178 20 6 0.8977 2.2865 -5.6475 21 17 -0.0892 1.3576 -6.7324 22 6 1.3498 1.7224 -4.4683 23 1 -0.3634 -1.0233 0.0943 24 1 -0.3633 0.5934 0.8391 25 1 -0.3633 0.4301 -0.9333 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.3431 2.0856 4.3830 29 1 0.7157 1.8142 -1.5318 30 1 3.5769 2.2925 -2.0419 31 1 2.7408 0.7747 -2.4491 32 1 3.0841 4.3433 -3.2422 33 1 2.2887 5.3489 -5.3435 34 1 1.0891 0.7035 -4.2224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053156151.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:05 Heat of formation + Delta-G solvation = -44.376766 kcal Electronic energy + Delta-G solvation = -18211.092853 eV Core-core repulsion = 15083.424566 eV Total energy + Delta-G solvation = -3127.668287 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.00501 -40.41697 -38.43365 -37.56627 -34.72810 -33.43797 -31.98317 -31.04920 -28.70777 -25.89779 -24.96524 -24.16622 -22.47792 -21.32279 -18.87557 -18.48518 -17.73065 -17.27806 -16.87554 -16.78179 -16.12703 -15.48054 -15.18948 -15.00573 -14.88127 -14.61012 -14.40121 -14.23819 -13.84256 -13.45798 -13.23468 -12.78710 -12.50333 -12.47858 -12.37109 -12.26087 -12.15295 -11.88789 -11.64127 -11.23293 -11.08313 -10.64956 -10.02589 -9.65591 -8.97444 -8.20075 -6.19681 -0.07970 0.06396 0.94396 1.33771 1.38096 1.47247 2.37097 2.38695 3.04503 3.15256 3.53314 3.67643 3.84125 4.06198 4.17094 4.29088 4.33988 4.42000 4.50788 4.69626 4.74344 4.85174 4.91176 4.96413 5.08143 5.10081 5.18630 5.31994 5.48512 5.60922 5.67911 5.76598 6.06504 6.72532 6.75691 6.86737 7.43660 8.97271 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031639 B = 0.004260 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.768194 B = 6571.958872 C = 6992.206936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.158 4.158 3 C 0.190 3.810 4 H 0.032 0.968 5 C -0.484 4.484 6 H 0.036 0.964 7 C 0.013 3.987 8 N -0.953 5.953 9 Si 0.941 3.059 10 H -0.270 1.270 11 H -0.247 1.247 12 H -0.304 1.304 13 N -0.678 5.678 14 C 0.095 3.905 15 C -0.075 4.075 16 C -0.065 4.065 17 C -0.136 4.136 18 C 0.089 3.911 19 F -0.136 7.136 20 C -0.082 4.082 21 Cl -0.056 7.056 22 C -0.079 4.079 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.262 0.738 29 H 0.337 0.663 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.154 0.846 33 H 0.167 0.833 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 -2.545 -19.526 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.197 4.197 3 C 0.081 3.919 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.054 0.946 7 C -0.183 4.183 8 N -0.594 5.594 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.171 1.171 12 H -0.233 1.233 13 N -0.309 5.309 14 C -0.033 4.033 15 C -0.076 4.076 16 C -0.084 4.084 17 C -0.154 4.154 18 C 0.069 3.931 19 F -0.115 7.115 20 C -0.109 4.109 21 Cl -0.027 7.027 22 C -0.099 4.099 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.156 0.844 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.171 0.829 33 H 0.185 0.815 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.947 -1.996 -19.325 19.650 hybrid contribution -0.223 -1.356 0.239 1.395 sum 2.724 -3.352 -19.086 19.569 Atomic orbital electron populations 1.21583 0.95250 1.00548 1.01826 1.22436 0.97792 0.99480 0.99996 1.19485 0.95271 0.89044 0.88146 0.95037 1.21104 1.29854 1.11382 0.89920 0.94604 1.25662 0.97058 0.99713 0.95871 1.70042 1.47570 1.42624 0.99174 0.85981 0.79883 0.80345 0.76899 1.19632 1.17094 1.23264 1.60593 1.05007 1.62776 1.02533 1.20978 0.96542 0.98373 0.87410 1.19934 0.97502 0.94739 0.95436 1.21285 0.97758 0.94063 0.95269 1.21374 0.98301 1.01818 0.93931 1.17625 0.99775 0.91070 0.84613 1.91509 1.87948 1.85367 1.46638 1.21019 1.02053 0.92294 0.95575 1.98376 1.68451 1.72615 1.63273 1.20991 0.96391 1.01327 0.91144 0.92782 0.93917 0.92147 0.91355 0.94485 0.92887 0.84370 0.89820 0.93434 0.82864 0.81508 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.40 71.98 0.68 -4.20 16 2 C -0.16 -5.91 5.23 30.60 0.16 -5.75 16 3 C 0.19 8.01 1.92 44.17 0.08 8.10 16 4 H 0.03 1.36 6.89 -2.39 -0.02 1.35 16 5 C -0.48 -26.09 7.86 25.60 0.20 -25.89 16 6 H 0.04 2.21 8.06 -2.91 -0.02 2.19 16 7 C 0.01 0.75 5.45 84.65 0.46 1.21 16 8 N -0.95 -58.44 13.96 21.45 0.30 -58.14 16 9 Si 0.94 43.26 24.33 68.60 1.67 44.93 16 10 H -0.27 -11.91 6.91 99.48 0.69 -11.23 16 11 H -0.25 -10.32 6.53 99.48 0.65 -9.68 16 12 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 13 N -0.68 -24.02 6.25 -499.45 -3.12 -27.14 16 14 C 0.10 2.56 5.60 85.56 0.48 3.04 16 15 C -0.08 -1.75 5.35 -19.86 -0.11 -1.86 16 16 C -0.07 -1.37 9.70 22.27 0.22 -1.16 16 17 C -0.14 -2.65 10.03 22.31 0.22 -2.42 16 18 C 0.09 2.02 7.28 22.39 0.16 2.19 16 19 F -0.14 -3.22 16.84 44.97 0.76 -2.47 16 20 C -0.08 -1.87 6.33 22.36 0.14 -1.73 16 21 Cl -0.06 -1.23 28.62 -2.72 -0.08 -1.31 16 22 C -0.08 -1.75 9.48 22.28 0.21 -1.54 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.04 1.87 6.89 -2.38 -0.02 1.86 16 25 H 0.06 1.91 6.61 -2.39 -0.02 1.89 16 26 H 0.07 2.10 7.40 -2.39 -0.02 2.08 16 27 H 0.04 1.49 3.39 -2.39 -0.01 1.48 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.34 11.47 6.54 -89.69 -0.59 10.89 16 30 H 0.08 2.21 8.07 -2.39 -0.02 2.19 16 31 H 0.05 1.16 7.32 -2.38 -0.02 1.15 16 32 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -62.18 295.95 2.90 -59.28 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.46 Total: 14.86 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 2.91 Total: -30.02 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -2.82 Total: -85.28 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.76 Total: -2.47 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.67 Total: 44.93 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -62.18 2.90 -59.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053156151.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.904 kcal (2) G-P(sol) polarization free energy of solvation -62.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds