Wall clock time and date at job start Mon Mar 30 2020 01:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48497 * 109.47182 * 270.00070 * 3 2 1 5 5 H 1.48502 * 109.46735 * 29.99541 * 3 2 1 6 6 H 1.48497 * 109.47141 * 149.99676 * 3 2 1 7 7 C 1.37880 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00161 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99496 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47205 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00233 * 179.97438 * 10 9 7 12 12 O 1.21616 * 120.00071 * 359.97438 * 11 10 9 13 13 C 1.47335 * 119.99825 * 180.02562 * 11 10 9 14 14 C 1.40756 * 119.81255 * 0.25973 * 13 11 10 15 15 C 1.35580 * 120.92126 * 180.24140 * 14 13 11 16 16 C 1.40870 * 120.21737 * 359.49431 * 15 14 13 17 17 C 1.40446 * 120.99232 * 180.22958 * 16 15 14 18 18 C 1.36200 * 119.72576 * 180.02562 * 17 16 15 19 19 C 1.39282 * 120.96915 * 359.97438 * 18 17 16 20 20 C 1.36197 * 120.91226 * 0.02562 * 19 18 17 21 21 C 1.40420 * 119.67911 * 359.97438 * 20 19 18 22 22 C 1.39277 * 119.81235 * 179.97438 * 13 11 10 23 23 O 1.35451 * 120.36077 * 0.04421 * 22 13 11 24 24 H 0.96999 * 120.00083 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47582 * 59.99687 * 9 7 2 26 26 H 1.09005 * 109.47523 * 299.99468 * 9 7 2 27 27 H 0.97000 * 119.99590 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.54143 * 359.97438 * 14 13 11 29 29 H 1.08002 * 119.89277 * 179.77866 * 15 14 13 30 30 H 1.07995 * 120.13723 * 0.03198 * 17 16 15 31 31 H 1.07997 * 119.51366 * 180.02562 * 18 17 16 32 32 H 1.08010 * 119.54387 * 180.02562 * 19 18 17 33 33 H 1.08002 * 120.16281 * 180.02562 * 20 19 18 34 34 H 0.96696 * 113.99623 * 269.97559 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 5.3250 -2.8215 0.0024 12 8 6.1153 -1.8971 0.0011 13 6 5.8161 -4.2106 0.0029 14 6 4.8979 -5.2774 -0.0022 15 6 5.3250 -6.5642 0.0031 16 6 6.7036 -6.8536 0.0031 17 6 7.1640 -8.1805 0.0038 18 6 8.5028 -8.4308 0.0044 19 6 9.4268 -7.3886 0.0038 20 6 9.0166 -6.0899 0.0032 21 6 7.6438 -5.7943 0.0026 22 6 7.1862 -4.4606 0.0026 23 8 8.0695 -3.4337 0.0026 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.3696 -3.3125 0.0029 28 1 3.8384 -5.0681 -0.0062 29 1 4.6059 -7.3700 0.0026 30 1 6.4594 -8.9989 0.0037 31 1 8.8530 -9.4524 0.0044 32 1 10.4832 -7.6135 0.0039 33 1 9.7436 -5.2912 0.0024 34 1 8.3260 -3.1357 -0.8808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054156720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:44 Heat of formation + Delta-G solvation = -36.109077 kcal Electronic energy + Delta-G solvation = -19471.769067 eV Core-core repulsion = 16334.519353 eV Total energy + Delta-G solvation = -3137.249713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.81435 -38.90379 -37.39657 -35.95354 -34.27021 -32.40087 -31.97161 -30.72017 -28.94952 -27.82767 -24.29974 -23.37476 -22.12580 -21.75189 -20.25646 -18.48444 -18.21540 -17.04541 -16.63757 -16.36018 -15.44932 -15.06498 -14.94810 -14.37952 -14.32777 -14.04857 -13.95387 -13.36786 -13.24446 -13.11438 -12.44971 -12.26471 -12.14964 -11.81465 -11.28746 -11.19880 -11.02261 -10.76719 -10.66539 -9.97339 -9.91859 -9.50342 -9.22395 -8.82759 -8.77731 -8.17956 -7.87942 -6.22117 -4.24511 0.24781 0.69869 1.76013 2.55748 3.26678 3.33525 3.42441 3.58410 3.87395 3.92879 4.17555 4.33286 4.47975 4.63192 4.75017 4.94763 5.02914 5.13029 5.13418 5.16384 5.28028 5.52620 5.71979 5.88159 5.95406 5.98607 6.17238 6.30734 6.39509 6.54685 6.72839 6.81709 7.06468 7.20057 7.37500 7.68754 8.12279 8.49086 8.73871 8.90426 9.37838 10.89781 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.039645 B = 0.003978 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.105522 B = 7036.194487 C = 7724.596705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.221 3.779 10 N -0.700 5.700 11 C 0.541 3.459 12 O -0.540 6.540 13 C -0.157 4.157 14 C -0.072 4.072 15 C -0.126 4.126 16 C -0.024 4.024 17 C -0.113 4.113 18 C -0.108 4.108 19 C -0.128 4.128 20 C -0.087 4.087 21 C -0.087 4.087 22 C 0.183 3.817 23 O -0.469 6.469 24 H 0.268 0.732 25 H 0.027 0.973 26 H 0.022 0.978 27 H 0.395 0.605 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.132 0.868 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.709 -17.236 -1.659 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.349 5.349 11 C 0.327 3.673 12 O -0.420 6.420 13 C -0.160 4.160 14 C -0.090 4.090 15 C -0.144 4.144 16 C -0.024 4.024 17 C -0.131 4.131 18 C -0.126 4.126 19 C -0.146 4.146 20 C -0.105 4.105 21 C -0.088 4.088 22 C 0.136 3.864 23 O -0.280 6.280 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.040 0.960 27 H 0.230 0.770 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.150 0.850 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 16.028 -16.441 -1.057 22.985 hybrid contribution -0.048 0.568 -0.469 0.738 sum 15.980 -15.873 -1.526 22.575 Atomic orbital electron populations 1.69879 1.06209 1.27454 1.49388 1.24792 0.94796 0.99182 0.93820 0.86813 0.80632 0.83194 0.79056 1.19833 1.20873 1.18439 1.21080 0.88463 0.95253 1.53418 0.90249 1.19520 0.95267 0.78419 0.96909 1.46139 1.05434 1.11153 1.72199 1.18004 0.83340 0.87697 0.78277 1.90759 1.55360 1.45285 1.50559 1.20593 0.93368 0.94781 1.07295 1.20942 0.99712 0.91807 0.96554 1.20891 0.94151 0.96942 1.02401 1.18072 0.93107 0.92876 0.98365 1.21038 0.96118 0.95204 1.00782 1.20913 0.93279 0.99315 0.99071 1.20851 0.99839 0.92627 1.01302 1.21005 0.94278 0.97263 0.97913 1.18356 0.94184 0.92171 1.04091 1.18513 0.87379 0.86052 0.94451 1.84660 1.61003 1.49082 1.33267 0.92240 0.95532 0.96007 0.77022 0.84743 0.84837 0.85243 0.85892 0.85855 0.85011 0.74608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.54 -14.99 9.83 -34.44 -0.34 -15.33 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 9 C 0.22 5.51 4.50 -5.19 -0.02 5.48 16 10 N -0.70 -14.67 5.50 -62.59 -0.34 -15.02 16 11 C 0.54 10.99 7.75 -12.56 -0.10 10.89 16 12 O -0.54 -12.60 15.10 -16.87 -0.25 -12.86 16 13 C -0.16 -2.55 5.88 -104.86 -0.62 -3.17 16 14 C -0.07 -0.95 9.43 -39.58 -0.37 -1.33 16 15 C -0.13 -1.42 9.72 -39.54 -0.38 -1.80 16 16 C -0.02 -0.28 5.75 -106.77 -0.61 -0.89 16 17 C -0.11 -1.05 9.76 -39.48 -0.39 -1.44 16 18 C -0.11 -0.90 9.95 -39.93 -0.40 -1.30 16 19 C -0.13 -1.14 9.95 -39.93 -0.40 -1.53 16 20 C -0.09 -0.93 9.56 -39.49 -0.38 -1.31 16 21 C -0.09 -1.13 5.75 -106.73 -0.61 -1.74 16 22 C 0.18 2.76 6.73 -38.15 -0.26 2.50 16 23 O -0.47 -7.01 10.73 -40.18 -0.43 -7.45 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 26 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 27 H 0.39 7.25 6.30 -40.82 -0.26 6.99 16 28 H 0.13 1.61 6.34 -52.49 -0.33 1.27 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.13 1.25 7.61 -52.49 -0.40 0.85 16 34 H 0.40 4.36 9.06 45.56 0.41 4.78 16 LS Contribution 295.98 15.07 4.46 4.46 Total: -1.00 -33.98 295.98 -8.05 -42.03 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -2.61 Total: 6.54 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -4.97 Total: -8.84 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.43 Total: -40.74 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.69 Total: -20.30 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.98 -8.05 -42.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.923 kcal (2) G-P(sol) polarization free energy of solvation -33.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds