Wall clock time and date at job start Mon Mar 30 2020 01:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00101 * 2 1 4 4 H 1.48497 * 109.47182 * 270.00070 * 3 2 1 5 5 H 1.48502 * 109.46735 * 29.99541 * 3 2 1 6 6 H 1.48497 * 109.47141 * 149.99676 * 3 2 1 7 7 C 1.37880 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00161 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99496 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47205 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00233 * 179.97438 * 10 9 7 12 12 O 1.21616 * 120.00071 * 359.97438 * 11 10 9 13 13 C 1.47335 * 119.99825 * 180.02562 * 11 10 9 14 14 C 1.40756 * 119.81255 * 0.25973 * 13 11 10 15 15 C 1.35580 * 120.92126 * 180.24140 * 14 13 11 16 16 C 1.40870 * 120.21737 * 359.49431 * 15 14 13 17 17 C 1.40446 * 120.99232 * 180.22958 * 16 15 14 18 18 C 1.36200 * 119.72576 * 180.02562 * 17 16 15 19 19 C 1.39282 * 120.96915 * 359.97438 * 18 17 16 20 20 C 1.36197 * 120.91226 * 0.02562 * 19 18 17 21 21 C 1.40420 * 119.67911 * 359.97438 * 20 19 18 22 22 C 1.39277 * 119.81235 * 179.97438 * 13 11 10 23 23 O 1.35451 * 120.36077 * 0.04421 * 22 13 11 24 24 H 0.96999 * 120.00083 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47582 * 59.99687 * 9 7 2 26 26 H 1.09005 * 109.47523 * 299.99468 * 9 7 2 27 27 H 0.97000 * 119.99590 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.54143 * 359.97438 * 14 13 11 29 29 H 1.08002 * 119.89277 * 179.77866 * 15 14 13 30 30 H 1.07995 * 120.13723 * 0.03198 * 17 16 15 31 31 H 1.07997 * 119.51366 * 180.02562 * 18 17 16 32 32 H 1.08010 * 119.54387 * 180.02562 * 19 18 17 33 33 H 1.08002 * 120.16281 * 180.02562 * 20 19 18 34 34 H 0.96696 * 113.99623 * 269.97559 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 5.3250 -2.8215 0.0024 12 8 6.1153 -1.8971 0.0011 13 6 5.8161 -4.2106 0.0029 14 6 4.8979 -5.2774 -0.0022 15 6 5.3250 -6.5642 0.0031 16 6 6.7036 -6.8536 0.0031 17 6 7.1640 -8.1805 0.0038 18 6 8.5028 -8.4308 0.0044 19 6 9.4268 -7.3886 0.0038 20 6 9.0166 -6.0899 0.0032 21 6 7.6438 -5.7943 0.0026 22 6 7.1862 -4.4606 0.0026 23 8 8.0695 -3.4337 0.0026 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6799 0.8911 26 1 3.8752 -0.6805 -0.8889 27 1 3.3696 -3.3125 0.0029 28 1 3.8384 -5.0681 -0.0062 29 1 4.6059 -7.3700 0.0026 30 1 6.4594 -8.9989 0.0037 31 1 8.8530 -9.4524 0.0044 32 1 10.4832 -7.6135 0.0039 33 1 9.7436 -5.2912 0.0024 34 1 8.3260 -3.1357 -0.8808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054156720.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:43 Heat of formation + Delta-G solvation = -59.501388 kcal Electronic energy + Delta-G solvation = -19472.783433 eV Core-core repulsion = 16334.519353 eV Total energy + Delta-G solvation = -3138.264080 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.83620 -40.29146 -38.52113 -36.92920 -36.14152 -34.42806 -32.83509 -31.80895 -30.01085 -29.55702 -25.59429 -24.26381 -23.73324 -22.77577 -21.79460 -19.71680 -19.48819 -18.43635 -17.96575 -17.53885 -16.75339 -16.57944 -16.28170 -15.82008 -15.73236 -15.18729 -14.93605 -14.71512 -14.33989 -14.28305 -14.11913 -14.06258 -13.23905 -13.07926 -12.73087 -12.63223 -12.17460 -12.00540 -11.94636 -11.76535 -11.64441 -10.93623 -10.80763 -10.79005 -10.03548 -9.67062 -8.79863 -8.41852 -6.49176 -0.69756 -0.19173 0.88550 1.31522 1.33706 1.46861 1.55162 2.26575 2.31500 2.36829 2.93241 2.97041 3.14972 3.62561 3.74830 3.89167 4.01912 4.13705 4.30620 4.38452 4.46721 4.64494 4.75027 4.89217 4.98527 5.04150 5.09950 5.17807 5.21528 5.29687 5.44616 5.55595 5.56882 5.69673 5.99273 6.06412 6.50359 6.69059 6.76871 7.12396 7.31824 8.72802 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.039645 B = 0.003978 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.105522 B = 7036.194487 C = 7724.596705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.028 3.972 3 Si 0.937 3.063 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.233 3.767 10 N -0.701 5.701 11 C 0.541 3.459 12 O -0.578 6.578 13 C -0.185 4.185 14 C -0.089 4.089 15 C -0.110 4.110 16 C -0.036 4.036 17 C -0.115 4.115 18 C -0.101 4.101 19 C -0.118 4.118 20 C -0.106 4.106 21 C -0.104 4.104 22 C 0.177 3.823 23 O -0.486 6.486 24 H 0.273 0.727 25 H 0.012 0.988 26 H 0.014 0.986 27 H 0.406 0.594 28 H 0.140 0.860 29 H 0.169 0.831 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.378 -19.922 -1.776 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.172 4.172 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.110 3.890 10 N -0.351 5.351 11 C 0.330 3.670 12 O -0.460 6.460 13 C -0.189 4.189 14 C -0.107 4.107 15 C -0.127 4.127 16 C -0.037 4.037 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.136 4.136 20 C -0.124 4.124 21 C -0.105 4.105 22 C 0.130 3.870 23 O -0.299 6.299 24 H 0.082 0.918 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.243 0.757 28 H 0.158 0.842 29 H 0.186 0.814 30 H 0.178 0.822 31 H 0.176 0.824 32 H 0.170 0.830 33 H 0.153 0.847 34 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 17.694 -19.160 -1.185 26.107 hybrid contribution -0.434 1.165 -0.435 1.318 sum 17.259 -17.994 -1.620 24.986 Atomic orbital electron populations 1.69974 1.07613 1.28682 1.50496 1.25582 0.95564 1.02618 0.93471 0.85859 0.79191 0.79317 0.79555 1.18771 1.19622 1.18730 1.21258 0.89714 0.94724 1.52923 0.92154 1.19130 0.93564 0.80593 0.95753 1.45963 1.06337 1.09950 1.72867 1.18616 0.82433 0.89324 0.76657 1.90714 1.56046 1.47008 1.52280 1.20354 0.94536 0.92860 1.11164 1.20983 0.99496 0.92095 0.98168 1.21253 0.94858 0.96775 0.99860 1.18425 0.93121 0.93900 0.98211 1.21415 0.97362 0.94629 0.99870 1.21397 0.92826 1.00889 0.96755 1.21277 1.01674 0.91819 0.98818 1.21160 0.93457 0.98646 0.99147 1.18514 0.95641 0.91324 1.04975 1.18763 0.86917 0.87056 0.94298 1.84598 1.61097 1.49678 1.34542 0.91751 0.97050 0.96766 0.75672 0.84191 0.81374 0.82214 0.82372 0.83012 0.84684 0.73254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.96 21.45 0.30 -55.61 16 2 C 0.03 1.62 5.47 84.65 0.46 2.08 16 3 Si 0.94 44.82 27.47 68.60 1.88 46.70 16 4 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.26 -12.61 6.54 99.48 0.65 -11.96 16 7 C -0.55 -30.97 9.83 25.60 0.25 -30.72 16 8 H 0.06 3.55 7.84 -2.91 -0.02 3.53 16 9 C 0.23 11.95 4.50 85.63 0.38 12.33 16 10 N -0.70 -30.43 5.50 -470.19 -2.58 -33.01 16 11 C 0.54 22.86 7.75 86.64 0.67 23.53 16 12 O -0.58 -28.13 15.10 17.09 0.26 -27.88 16 13 C -0.19 -6.21 5.88 -20.02 -0.12 -6.33 16 14 C -0.09 -2.34 9.43 22.27 0.21 -2.13 16 15 C -0.11 -2.24 9.72 22.30 0.22 -2.02 16 16 C -0.04 -0.76 5.75 -21.26 -0.12 -0.88 16 17 C -0.12 -1.63 9.76 22.33 0.22 -1.41 16 18 C -0.10 -1.19 9.95 22.05 0.22 -0.98 16 19 C -0.12 -1.65 9.95 22.05 0.22 -1.43 16 20 C -0.11 -2.09 9.56 22.33 0.21 -1.88 16 21 C -0.10 -2.57 5.75 -21.23 -0.12 -2.70 16 22 C 0.18 5.42 6.73 23.20 0.16 5.58 16 23 O -0.49 -15.13 10.73 -66.31 -0.71 -15.84 16 24 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 25 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 26 H 0.01 0.76 7.57 -2.38 -0.02 0.74 16 27 H 0.41 15.47 6.30 -92.71 -0.58 14.89 16 28 H 0.14 3.36 6.34 -2.91 -0.02 3.34 16 29 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 30 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 31 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.14 2.45 7.61 -2.91 -0.02 2.43 16 34 H 0.41 9.60 9.06 -74.06 -0.67 8.93 16 Total: -1.00 -75.09 295.98 1.85 -73.23 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -0.15 Total: 19.35 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 2.86 Total: -6.94 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -2.28 Total: -88.62 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.45 Total: -43.72 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -75.09 1.85 -73.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054156720.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.729 kcal (2) G-P(sol) polarization free energy of solvation -75.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds