Wall clock time and date at job start Mon Mar 30 2020 01:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 H 1.09000 * 109.46840 * 185.16123 * 3 2 1 5 5 C 1.50696 * 109.47177 * 305.16741 * 3 2 1 6 6 H 1.08006 * 119.99584 * 120.00049 * 5 3 2 7 7 C 1.37870 * 120.00256 * 299.99343 * 5 3 2 8 8 N 1.31519 * 119.99950 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47258 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46782 * 120.00423 * 9 7 5 12 12 H 1.48499 * 109.47482 * 240.00458 * 9 7 5 13 13 N 1.46907 * 109.46640 * 65.16836 * 3 2 1 14 14 C 1.46903 * 110.99661 * 85.94412 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.77766 * 14 13 3 16 16 C 1.38460 * 120.01664 * 269.72433 * 15 14 13 17 17 F 1.35102 * 120.01943 * 359.97113 * 16 15 14 18 18 C 1.38443 * 119.96190 * 179.70435 * 16 15 14 19 19 C 1.38222 * 120.00102 * 0.56793 * 18 16 15 20 20 C 1.38207 * 120.03859 * 359.73032 * 19 18 16 21 21 C 1.38284 * 120.02352 * 89.99852 * 15 14 13 22 22 Cl 1.73606 * 119.99943 * 359.97438 * 21 15 14 23 23 H 1.08997 * 109.46994 * 54.85679 * 1 2 3 24 24 H 1.09000 * 109.47379 * 294.85286 * 1 2 3 25 25 H 1.09002 * 109.47405 * 174.85109 * 1 2 3 26 26 H 1.08997 * 109.46939 * 120.00585 * 2 1 3 27 27 H 1.09001 * 109.47107 * 240.00414 * 2 1 3 28 28 H 0.97000 * 119.99826 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00055 * 321.98889 * 13 3 2 30 30 H 1.08994 * 109.46864 * 294.76931 * 14 13 3 31 31 H 1.08994 * 109.47486 * 54.77618 * 14 13 3 32 32 H 1.08001 * 120.00076 * 180.29405 * 18 16 15 33 33 H 1.07999 * 119.98066 * 179.70337 * 19 18 16 34 34 H 1.07997 * 119.98200 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4438 -0.0924 5 6 1.4359 2.1888 -1.1614 6 1 0.8267 3.0628 -0.9836 7 6 1.6609 1.7562 -2.4510 8 7 2.4024 0.6917 -2.6675 9 14 0.9115 2.6810 -3.8906 10 1 0.1253 3.8339 -3.3830 11 1 1.9940 3.1737 -4.7799 12 1 0.0199 1.7709 -4.6535 13 7 1.6547 2.0979 1.2570 14 6 2.6440 1.8373 2.3113 15 6 2.2845 2.6266 3.5437 16 6 2.7863 3.9052 3.7181 17 9 3.5990 4.4456 2.7840 18 6 2.4503 4.6317 4.8477 19 6 1.6238 4.0761 5.8063 20 6 1.1278 2.7975 5.6351 21 6 1.4577 2.0723 4.5036 22 17 0.8331 0.4668 4.2890 23 1 -0.3633 0.5915 -0.8403 24 1 -0.3634 0.4319 0.9325 25 1 -0.3634 -1.0235 -0.0922 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.5604 0.3871 -3.5748 29 1 0.7324 1.8096 1.5473 30 1 2.6491 0.7737 2.5498 31 1 3.6328 2.1365 1.9638 32 1 2.8376 5.6309 4.9822 33 1 1.3658 4.6414 6.6896 34 1 0.4818 2.3645 6.3844 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:07 Heat of formation + Delta-G solvation = -33.848471 kcal Electronic energy + Delta-G solvation = -18691.120730 eV Core-core repulsion = 15563.908984 eV Total energy + Delta-G solvation = -3127.211746 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.68589 -39.24242 -36.51213 -36.37692 -33.24684 -31.40809 -30.41644 -29.66323 -26.56229 -24.54743 -23.17942 -22.77182 -21.34766 -19.29019 -17.68664 -16.69683 -16.32407 -15.58766 -15.52323 -14.76043 -14.69720 -14.50832 -13.73319 -13.43516 -13.22546 -12.95810 -12.75964 -12.39661 -12.29484 -11.79139 -11.43982 -11.33986 -11.24778 -10.93963 -10.86569 -10.58536 -10.47831 -9.94434 -9.81455 -9.53743 -8.97908 -8.77671 -8.66099 -8.31611 -7.22135 -5.94519 -3.95616 0.98353 1.09584 2.09240 3.33912 3.41314 3.42313 3.47710 4.32020 4.47617 4.66383 4.81655 4.84969 5.15842 5.37299 5.44579 5.55700 5.76022 5.87920 6.03552 6.12442 6.19977 6.29986 6.40091 6.41237 6.60604 6.74474 6.94110 7.28514 7.30147 7.54694 7.72253 7.91528 8.29389 8.54476 8.62492 9.09987 9.67702 11.12617 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.005788 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.256790 B = 4836.021745 C = 5624.662721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.144 4.144 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.485 4.485 6 H 0.062 0.938 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.674 5.674 14 C 0.090 3.910 15 C -0.094 4.094 16 C 0.132 3.868 17 F -0.123 7.123 18 C -0.155 4.155 19 C -0.089 4.089 20 C -0.126 4.126 21 C -0.009 4.009 22 Cl -0.056 7.056 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.023 0.977 26 H 0.011 0.989 27 H 0.093 0.907 28 H 0.258 0.742 29 H 0.329 0.671 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 2.992 16.929 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.184 4.184 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.305 5.305 14 C -0.040 4.040 15 C -0.096 4.096 16 C 0.112 3.888 17 F -0.102 7.102 18 C -0.174 4.174 19 C -0.107 4.107 20 C -0.145 4.145 21 C -0.036 4.036 22 Cl -0.026 7.026 23 H 0.087 0.913 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.030 0.970 27 H 0.111 0.889 28 H 0.068 0.932 29 H 0.147 0.853 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.046 3.365 16.516 16.888 hybrid contribution -0.481 -0.579 -0.809 1.105 sum -1.526 2.786 15.707 16.025 Atomic orbital electron populations 1.21590 0.97693 0.98634 1.00759 1.22090 0.95030 1.00991 1.00265 1.19245 0.96057 0.88660 0.85149 0.94878 1.21084 1.30360 1.11423 0.89574 0.91973 1.24902 0.95579 0.95184 0.98695 1.69895 1.39146 1.24025 1.20545 0.86518 0.78953 0.79878 0.82540 1.19770 1.21207 1.21257 1.60905 1.03483 1.63175 1.02936 1.20870 0.98430 0.95981 0.88670 1.19993 0.97781 0.94395 0.97432 1.17317 0.92695 0.91387 0.87422 1.91555 1.69560 1.85256 1.63781 1.21225 1.01155 1.01104 0.93910 1.20847 0.96502 0.94531 0.98831 1.21031 1.01690 0.94817 0.96942 1.20630 0.98788 0.88155 0.96067 1.98387 1.85482 1.21643 1.97132 0.91260 0.95396 0.95826 0.97028 0.88886 0.93205 0.85294 0.93998 0.90197 0.84389 0.84446 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.40 37.16 0.35 -2.46 16 2 C -0.14 -3.41 5.51 -26.73 -0.15 -3.55 16 3 C 0.22 5.40 2.33 -68.86 -0.16 5.24 16 4 H 0.03 0.92 7.70 -51.93 -0.40 0.52 16 5 C -0.49 -13.28 7.25 -34.44 -0.25 -13.53 16 6 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 7 C 0.06 1.56 5.28 -17.82 -0.09 1.47 16 8 N -0.90 -25.44 11.38 55.43 0.63 -24.81 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.67 -14.61 6.19 -109.22 -0.68 -15.28 16 14 C 0.09 1.69 5.07 -4.97 -0.03 1.66 16 15 C -0.09 -1.50 5.45 -104.52 -0.57 -2.07 16 16 C 0.13 2.01 7.24 -39.42 -0.29 1.72 16 17 F -0.12 -2.12 16.47 2.25 0.04 -2.08 16 18 C -0.15 -1.80 10.03 -39.51 -0.40 -2.19 16 19 C -0.09 -0.87 10.04 -39.60 -0.40 -1.27 16 20 C -0.13 -1.39 9.83 -39.54 -0.39 -1.77 16 21 C -0.01 -0.12 6.31 -39.51 -0.25 -0.37 16 22 Cl -0.06 -0.78 27.30 -51.86 -1.42 -2.19 16 23 H 0.07 1.64 6.85 -51.93 -0.36 1.29 16 24 H 0.03 0.55 6.63 -51.93 -0.34 0.20 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.01 0.25 7.50 -51.93 -0.39 -0.14 16 27 H 0.09 2.46 6.22 -51.93 -0.32 2.14 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.33 6.91 6.69 -39.29 -0.26 6.65 16 30 H 0.04 0.77 6.30 -51.93 -0.33 0.45 16 31 H 0.08 1.57 7.41 -51.93 -0.39 1.18 16 32 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 299.70 15.07 4.52 4.52 Total: -1.00 -28.62 299.70 -8.57 -37.18 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -4.02 Total: 3.25 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -2.61 Total: -17.14 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: -0.05 Total: -40.10 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.42 Total: -2.19 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.62 -8.57 -37.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.336 kcal (2) G-P(sol) polarization free energy of solvation -28.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds