Wall clock time and date at job start Mon Mar 30 2020 01:10:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52998 * 109.46992 * 2 1
4 4 H 1.09000 * 109.46840 * 185.16123 * 3 2 1
5 5 C 1.50696 * 109.47177 * 305.16741 * 3 2 1
6 6 H 1.08006 * 119.99584 * 120.00049 * 5 3 2
7 7 C 1.37870 * 120.00256 * 299.99343 * 5 3 2
8 8 N 1.31519 * 119.99950 * 0.02562 * 7 5 3
9 9 Si 1.86800 * 120.00077 * 179.97438 * 7 5 3
10 10 H 1.48491 * 109.47258 * 0.02562 * 9 7 5
11 11 H 1.48506 * 109.46782 * 120.00423 * 9 7 5
12 12 H 1.48499 * 109.47482 * 240.00458 * 9 7 5
13 13 N 1.46907 * 109.46640 * 65.16836 * 3 2 1
14 14 C 1.46903 * 110.99661 * 85.94412 * 13 3 2
15 15 C 1.50704 * 109.46626 * 174.77766 * 14 13 3
16 16 C 1.38460 * 120.01664 * 269.72433 * 15 14 13
17 17 F 1.35102 * 120.01943 * 359.97113 * 16 15 14
18 18 C 1.38443 * 119.96190 * 179.70435 * 16 15 14
19 19 C 1.38222 * 120.00102 * 0.56793 * 18 16 15
20 20 C 1.38207 * 120.03859 * 359.73032 * 19 18 16
21 21 C 1.38284 * 120.02352 * 89.99852 * 15 14 13
22 22 Cl 1.73606 * 119.99943 * 359.97438 * 21 15 14
23 23 H 1.08997 * 109.46994 * 54.85679 * 1 2 3
24 24 H 1.09000 * 109.47379 * 294.85286 * 1 2 3
25 25 H 1.09002 * 109.47405 * 174.85109 * 1 2 3
26 26 H 1.08997 * 109.46939 * 120.00585 * 2 1 3
27 27 H 1.09001 * 109.47107 * 240.00414 * 2 1 3
28 28 H 0.97000 * 119.99826 * 179.97438 * 8 7 5
29 29 H 1.00897 * 111.00055 * 321.98889 * 13 3 2
30 30 H 1.08994 * 109.46864 * 294.76931 * 14 13 3
31 31 H 1.08994 * 109.47486 * 54.77618 * 14 13 3
32 32 H 1.08001 * 120.00076 * 180.29405 * 18 16 15
33 33 H 1.07999 * 119.98066 * 179.70337 * 19 18 16
34 34 H 1.07997 * 119.98200 * 180.02562 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1261 1.4438 -0.0924
5 6 1.4359 2.1888 -1.1614
6 1 0.8267 3.0628 -0.9836
7 6 1.6609 1.7562 -2.4510
8 7 2.4024 0.6917 -2.6675
9 14 0.9115 2.6810 -3.8906
10 1 0.1253 3.8339 -3.3830
11 1 1.9940 3.1737 -4.7799
12 1 0.0199 1.7709 -4.6535
13 7 1.6547 2.0979 1.2570
14 6 2.6440 1.8373 2.3113
15 6 2.2845 2.6266 3.5437
16 6 2.7863 3.9052 3.7181
17 9 3.5990 4.4456 2.7840
18 6 2.4503 4.6317 4.8477
19 6 1.6238 4.0761 5.8063
20 6 1.1278 2.7975 5.6351
21 6 1.4577 2.0723 4.5036
22 17 0.8331 0.4668 4.2890
23 1 -0.3633 0.5915 -0.8403
24 1 -0.3634 0.4319 0.9325
25 1 -0.3634 -1.0235 -0.0922
26 1 1.8933 -0.5139 0.8899
27 1 1.8934 -0.5138 -0.8900
28 1 2.5604 0.3871 -3.5748
29 1 0.7324 1.8096 1.5473
30 1 2.6491 0.7737 2.5498
31 1 3.6328 2.1365 1.9638
32 1 2.8376 5.6309 4.9822
33 1 1.3658 4.6414 6.6896
34 1 0.4818 2.3645 6.3844
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000054182927.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:10:07
Heat of formation + Delta-G solvation = -50.264175 kcal
Electronic energy + Delta-G solvation = -18691.832568 eV
Core-core repulsion = 15563.908984 eV
Total energy + Delta-G solvation = -3127.923584 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.083 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-49.89350 -40.29679 -38.26475 -37.44526 -34.93202 -33.19830 -31.40694 -31.16218
-28.42779 -26.12827 -25.05418 -23.78461 -22.53225 -21.23167 -18.81242 -18.19631
-17.77401 -16.98035 -16.82070 -16.54518 -16.10279 -15.71984 -15.38008 -14.82657
-14.53749 -14.43740 -14.23781 -14.04955 -13.68179 -13.44554 -12.88310 -12.75930
-12.61301 -12.46286 -12.33259 -12.32655 -12.02421 -11.74129 -11.68197 -11.45217
-10.99246 -10.44771 -9.85711 -9.68114 -8.99178 -8.06394 -6.14873 0.00932
0.08830 1.05444 1.40936 1.43380 1.55043 2.42192 2.48352 3.22246
3.30608 3.53402 3.72850 3.88783 4.00030 4.27286 4.44650 4.49383
4.53094 4.60617 4.64696 4.74633 4.96465 5.08672 5.13317 5.15003
5.23980 5.32730 5.40016 5.68429 5.72269 5.77105 5.80949 6.28942
6.62628 6.77244 6.96065 7.52471 8.99388
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.022589 B = 0.005788 C = 0.004977
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1239.256790 B = 4836.021745 C = 5624.662721
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.135 4.135
3 C 0.223 3.777
4 H -0.005 1.005
5 C -0.499 4.499
6 H 0.050 0.950
7 C 0.014 3.986
8 N -0.920 5.920
9 Si 0.953 3.047
10 H -0.270 1.270
11 H -0.284 1.284
12 H -0.279 1.279
13 N -0.677 5.677
14 C 0.098 3.902
15 C -0.121 4.121
16 C 0.100 3.900
17 F -0.146 7.146
18 C -0.146 4.146
19 C -0.068 4.068
20 C -0.116 4.116
21 C -0.019 4.019
22 Cl -0.063 7.063
23 H 0.046 0.954
24 H 0.045 0.955
25 H 0.042 0.958
26 H 0.023 0.977
27 H 0.063 0.937
28 H 0.259 0.741
29 H 0.333 0.667
30 H 0.042 0.958
31 H 0.057 0.943
32 H 0.165 0.835
33 H 0.186 0.814
34 H 0.167 0.833
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.911 4.047 19.229 19.864
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C -0.175 4.175
3 C 0.114 3.886
4 H 0.013 0.987
5 C -0.537 4.537
6 H 0.069 0.931
7 C -0.184 4.184
8 N -0.561 5.561
9 Si 0.779 3.221
10 H -0.195 1.195
11 H -0.210 1.210
12 H -0.205 1.205
13 N -0.308 5.308
14 C -0.032 4.032
15 C -0.123 4.123
16 C 0.081 3.919
17 F -0.125 7.125
18 C -0.165 4.165
19 C -0.086 4.086
20 C -0.134 4.134
21 C -0.046 4.046
22 Cl -0.034 7.034
23 H 0.065 0.935
24 H 0.064 0.936
25 H 0.061 0.939
26 H 0.042 0.958
27 H 0.082 0.918
28 H 0.068 0.932
29 H 0.152 0.848
30 H 0.060 0.940
31 H 0.076 0.924
32 H 0.182 0.818
33 H 0.203 0.797
34 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -2.587 4.422 18.833 19.517
hybrid contribution 0.019 -0.875 -1.392 1.644
sum -2.568 3.547 17.441 17.982
Atomic orbital electron populations
1.21460 0.95886 0.99606 1.00694 1.21915 0.96526 0.99719 0.99327
1.18981 0.93542 0.89648 0.86392 0.98706 1.21263 1.30373 1.11297
0.90806 0.93126 1.25593 0.95921 0.95909 1.00993 1.70022 1.39962
1.25080 1.21027 0.85580 0.78206 0.78796 0.79495 1.19477 1.21020
1.20498 1.60755 1.04329 1.62898 1.02814 1.20689 0.96616 0.96604
0.89244 1.19764 1.00352 0.95069 0.97097 1.17747 0.93710 0.91836
0.88656 1.91492 1.70457 1.85538 1.64967 1.21596 1.00542 1.01845
0.92494 1.21419 0.93987 0.93912 0.99243 1.21473 1.01004 0.94943
0.96026 1.20786 0.98890 0.88190 0.96774 1.98381 1.85485 1.22262
1.97252 0.93469 0.93620 0.93864 0.95799 0.91842 0.93153 0.84791
0.94007 0.92441 0.81785 0.79691 0.81553
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.13 9.40 71.98 0.68 -4.45 16
2 C -0.14 -6.53 5.51 30.59 0.17 -6.36 16
3 C 0.22 11.56 2.33 44.17 0.10 11.67 16
4 H -0.01 -0.29 7.70 -2.39 -0.02 -0.31 16
5 C -0.50 -28.03 7.25 25.60 0.19 -27.85 16
6 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16
7 C 0.01 0.78 5.28 84.65 0.45 1.23 16
8 N -0.92 -53.58 11.38 21.45 0.24 -53.33 16
9 Si 0.95 44.78 29.54 68.60 2.03 46.81 16
10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16
11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16
12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16
13 N -0.68 -30.21 6.19 -499.46 -3.09 -33.31 16
14 C 0.10 3.81 5.07 85.56 0.43 4.25 16
15 C -0.12 -3.86 5.45 -19.80 -0.11 -3.97 16
16 C 0.10 3.01 7.24 22.37 0.16 3.17 16
17 F -0.15 -5.19 16.47 44.97 0.74 -4.45 16
18 C -0.15 -2.94 10.03 22.31 0.22 -2.72 16
19 C -0.07 -0.99 10.04 22.26 0.22 -0.77 16
20 C -0.12 -2.09 9.83 22.30 0.22 -1.87 16
21 C -0.02 -0.50 6.31 22.32 0.14 -0.36 16
22 Cl -0.06 -1.67 27.30 -2.72 -0.07 -1.75 16
23 H 0.05 2.23 6.85 -2.39 -0.02 2.21 16
24 H 0.04 1.77 6.63 -2.39 -0.02 1.76 16
25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16
26 H 0.02 1.06 7.50 -2.39 -0.02 1.04 16
27 H 0.06 3.46 6.22 -2.39 -0.01 3.44 16
28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16
29 H 0.33 14.13 6.69 -89.70 -0.60 13.53 16
30 H 0.04 1.60 6.30 -2.39 -0.02 1.58 16
31 H 0.06 2.44 7.41 -2.39 -0.02 2.42 16
32 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16
33 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16
34 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16
Total: -1.00 -64.41 299.70 3.24 -61.17
By element:
Atomic # 1 Polarization: 12.37 SS G_CDS: 0.52 Total: 12.89 kcal
Atomic # 6 Polarization: -30.91 SS G_CDS: 2.88 Total: -28.04 kcal
Atomic # 7 Polarization: -83.79 SS G_CDS: -2.85 Total: -86.64 kcal
Atomic # 9 Polarization: -5.19 SS G_CDS: 0.74 Total: -4.45 kcal
Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal
Atomic # 17 Polarization: -1.67 SS G_CDS: -0.07 Total: -1.75 kcal
Total: -64.41 3.24 -61.17 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054182927.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.908 kcal
(2) G-P(sol) polarization free energy of solvation -64.413 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.505 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.264 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds