Wall clock time and date at job start Mon Mar 30 2020 01:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 H 1.09000 * 109.46840 * 185.16123 * 3 2 1 5 5 C 1.50696 * 109.47177 * 305.16741 * 3 2 1 6 6 H 1.08006 * 119.99584 * 120.00049 * 5 3 2 7 7 C 1.37870 * 120.00256 * 299.99343 * 5 3 2 8 8 N 1.31519 * 119.99950 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00077 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47258 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46782 * 120.00423 * 9 7 5 12 12 H 1.48499 * 109.47482 * 240.00458 * 9 7 5 13 13 N 1.46907 * 109.46640 * 65.16836 * 3 2 1 14 14 C 1.46903 * 110.99661 * 85.94412 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.77766 * 14 13 3 16 16 C 1.38460 * 120.01664 * 269.72433 * 15 14 13 17 17 F 1.35102 * 120.01943 * 359.97113 * 16 15 14 18 18 C 1.38443 * 119.96190 * 179.70435 * 16 15 14 19 19 C 1.38222 * 120.00102 * 0.56793 * 18 16 15 20 20 C 1.38207 * 120.03859 * 359.73032 * 19 18 16 21 21 C 1.38284 * 120.02352 * 89.99852 * 15 14 13 22 22 Cl 1.73606 * 119.99943 * 359.97438 * 21 15 14 23 23 H 1.08997 * 109.46994 * 54.85679 * 1 2 3 24 24 H 1.09000 * 109.47379 * 294.85286 * 1 2 3 25 25 H 1.09002 * 109.47405 * 174.85109 * 1 2 3 26 26 H 1.08997 * 109.46939 * 120.00585 * 2 1 3 27 27 H 1.09001 * 109.47107 * 240.00414 * 2 1 3 28 28 H 0.97000 * 119.99826 * 179.97438 * 8 7 5 29 29 H 1.00897 * 111.00055 * 321.98889 * 13 3 2 30 30 H 1.08994 * 109.46864 * 294.76931 * 14 13 3 31 31 H 1.08994 * 109.47486 * 54.77618 * 14 13 3 32 32 H 1.08001 * 120.00076 * 180.29405 * 18 16 15 33 33 H 1.07999 * 119.98066 * 179.70337 * 19 18 16 34 34 H 1.07997 * 119.98200 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4438 -0.0924 5 6 1.4359 2.1888 -1.1614 6 1 0.8267 3.0628 -0.9836 7 6 1.6609 1.7562 -2.4510 8 7 2.4024 0.6917 -2.6675 9 14 0.9115 2.6810 -3.8906 10 1 0.1253 3.8339 -3.3830 11 1 1.9940 3.1737 -4.7799 12 1 0.0199 1.7709 -4.6535 13 7 1.6547 2.0979 1.2570 14 6 2.6440 1.8373 2.3113 15 6 2.2845 2.6266 3.5437 16 6 2.7863 3.9052 3.7181 17 9 3.5990 4.4456 2.7840 18 6 2.4503 4.6317 4.8477 19 6 1.6238 4.0761 5.8063 20 6 1.1278 2.7975 5.6351 21 6 1.4577 2.0723 4.5036 22 17 0.8331 0.4668 4.2890 23 1 -0.3633 0.5915 -0.8403 24 1 -0.3634 0.4319 0.9325 25 1 -0.3634 -1.0235 -0.0922 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 2.5604 0.3871 -3.5748 29 1 0.7324 1.8096 1.5473 30 1 2.6491 0.7737 2.5498 31 1 3.6328 2.1365 1.9638 32 1 2.8376 5.6309 4.9822 33 1 1.3658 4.6414 6.6896 34 1 0.4818 2.3645 6.3844 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182927.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:07 Heat of formation + Delta-G solvation = -50.264175 kcal Electronic energy + Delta-G solvation = -18691.832568 eV Core-core repulsion = 15563.908984 eV Total energy + Delta-G solvation = -3127.923584 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.89350 -40.29679 -38.26475 -37.44526 -34.93202 -33.19830 -31.40694 -31.16218 -28.42779 -26.12827 -25.05418 -23.78461 -22.53225 -21.23167 -18.81242 -18.19631 -17.77401 -16.98035 -16.82070 -16.54518 -16.10279 -15.71984 -15.38008 -14.82657 -14.53749 -14.43740 -14.23781 -14.04955 -13.68179 -13.44554 -12.88310 -12.75930 -12.61301 -12.46286 -12.33259 -12.32655 -12.02421 -11.74129 -11.68197 -11.45217 -10.99246 -10.44771 -9.85711 -9.68114 -8.99178 -8.06394 -6.14873 0.00932 0.08830 1.05444 1.40936 1.43380 1.55043 2.42192 2.48352 3.22246 3.30608 3.53402 3.72850 3.88783 4.00030 4.27286 4.44650 4.49383 4.53094 4.60617 4.64696 4.74633 4.96465 5.08672 5.13317 5.15003 5.23980 5.32730 5.40016 5.68429 5.72269 5.77105 5.80949 6.28942 6.62628 6.77244 6.96065 7.52471 8.99388 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022589 B = 0.005788 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.256790 B = 4836.021745 C = 5624.662721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.135 4.135 3 C 0.223 3.777 4 H -0.005 1.005 5 C -0.499 4.499 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.677 5.677 14 C 0.098 3.902 15 C -0.121 4.121 16 C 0.100 3.900 17 F -0.146 7.146 18 C -0.146 4.146 19 C -0.068 4.068 20 C -0.116 4.116 21 C -0.019 4.019 22 Cl -0.063 7.063 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.023 0.977 27 H 0.063 0.937 28 H 0.259 0.741 29 H 0.333 0.667 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.165 0.835 33 H 0.186 0.814 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 4.047 19.229 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.175 4.175 3 C 0.114 3.886 4 H 0.013 0.987 5 C -0.537 4.537 6 H 0.069 0.931 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.308 5.308 14 C -0.032 4.032 15 C -0.123 4.123 16 C 0.081 3.919 17 F -0.125 7.125 18 C -0.165 4.165 19 C -0.086 4.086 20 C -0.134 4.134 21 C -0.046 4.046 22 Cl -0.034 7.034 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.152 0.848 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.182 0.818 33 H 0.203 0.797 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -2.587 4.422 18.833 19.517 hybrid contribution 0.019 -0.875 -1.392 1.644 sum -2.568 3.547 17.441 17.982 Atomic orbital electron populations 1.21460 0.95886 0.99606 1.00694 1.21915 0.96526 0.99719 0.99327 1.18981 0.93542 0.89648 0.86392 0.98706 1.21263 1.30373 1.11297 0.90806 0.93126 1.25593 0.95921 0.95909 1.00993 1.70022 1.39962 1.25080 1.21027 0.85580 0.78206 0.78796 0.79495 1.19477 1.21020 1.20498 1.60755 1.04329 1.62898 1.02814 1.20689 0.96616 0.96604 0.89244 1.19764 1.00352 0.95069 0.97097 1.17747 0.93710 0.91836 0.88656 1.91492 1.70457 1.85538 1.64967 1.21596 1.00542 1.01845 0.92494 1.21419 0.93987 0.93912 0.99243 1.21473 1.01004 0.94943 0.96026 1.20786 0.98890 0.88190 0.96774 1.98381 1.85485 1.22262 1.97252 0.93469 0.93620 0.93864 0.95799 0.91842 0.93153 0.84791 0.94007 0.92441 0.81785 0.79691 0.81553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 9.40 71.98 0.68 -4.45 16 2 C -0.14 -6.53 5.51 30.59 0.17 -6.36 16 3 C 0.22 11.56 2.33 44.17 0.10 11.67 16 4 H -0.01 -0.29 7.70 -2.39 -0.02 -0.31 16 5 C -0.50 -28.03 7.25 25.60 0.19 -27.85 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.78 5.28 84.65 0.45 1.23 16 8 N -0.92 -53.58 11.38 21.45 0.24 -53.33 16 9 Si 0.95 44.78 29.54 68.60 2.03 46.81 16 10 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 N -0.68 -30.21 6.19 -499.46 -3.09 -33.31 16 14 C 0.10 3.81 5.07 85.56 0.43 4.25 16 15 C -0.12 -3.86 5.45 -19.80 -0.11 -3.97 16 16 C 0.10 3.01 7.24 22.37 0.16 3.17 16 17 F -0.15 -5.19 16.47 44.97 0.74 -4.45 16 18 C -0.15 -2.94 10.03 22.31 0.22 -2.72 16 19 C -0.07 -0.99 10.04 22.26 0.22 -0.77 16 20 C -0.12 -2.09 9.83 22.30 0.22 -1.87 16 21 C -0.02 -0.50 6.31 22.32 0.14 -0.36 16 22 Cl -0.06 -1.67 27.30 -2.72 -0.07 -1.75 16 23 H 0.05 2.23 6.85 -2.39 -0.02 2.21 16 24 H 0.04 1.77 6.63 -2.39 -0.02 1.76 16 25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.02 1.06 7.50 -2.39 -0.02 1.04 16 27 H 0.06 3.46 6.22 -2.39 -0.01 3.44 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.33 14.13 6.69 -89.70 -0.60 13.53 16 30 H 0.04 1.60 6.30 -2.39 -0.02 1.58 16 31 H 0.06 2.44 7.41 -2.39 -0.02 2.42 16 32 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.19 1.06 8.06 -2.91 -0.02 1.04 16 34 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -64.41 299.70 3.24 -61.17 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.52 Total: 12.89 kcal Atomic # 6 Polarization: -30.91 SS G_CDS: 2.88 Total: -28.04 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -2.85 Total: -86.64 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.74 Total: -4.45 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.07 Total: -1.75 kcal Total: -64.41 3.24 -61.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182927.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.908 kcal (2) G-P(sol) polarization free energy of solvation -64.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds