Wall clock time and date at job start Mon Mar 30 2020 01:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47384 * 2 1 4 4 H 1.08997 * 109.46979 * 305.64509 * 3 2 1 5 5 C 1.50694 * 109.47202 * 185.64228 * 3 2 1 6 6 H 1.08001 * 120.00201 * 239.99623 * 5 3 2 7 7 C 1.37882 * 120.00196 * 59.73119 * 5 3 2 8 8 N 1.31513 * 119.99685 * 0.26633 * 7 5 3 9 9 Si 1.86800 * 120.00132 * 180.27618 * 7 5 3 10 10 H 1.48492 * 109.47232 * 59.99262 * 9 7 5 11 11 H 1.48498 * 109.46723 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46617 * 299.99233 * 9 7 5 13 13 N 1.46895 * 109.46688 * 65.64101 * 3 2 1 14 14 C 1.46905 * 111.00209 * 205.47915 * 13 3 2 15 15 C 1.50695 * 109.47478 * 184.88918 * 14 13 3 16 16 C 1.38449 * 120.02235 * 269.72852 * 15 14 13 17 17 F 1.35098 * 120.01902 * 359.97347 * 16 15 14 18 18 C 1.38446 * 119.96277 * 179.70100 * 16 15 14 19 19 C 1.38228 * 120.00055 * 0.57332 * 18 16 15 20 20 C 1.38201 * 120.03814 * 359.71872 * 19 18 16 21 21 C 1.38298 * 120.01542 * 89.99928 * 15 14 13 22 22 Cl 1.73596 * 120.00403 * 359.97438 * 21 15 14 23 23 H 1.08998 * 109.47474 * 174.39765 * 1 2 3 24 24 H 1.09003 * 109.47145 * 294.39997 * 1 2 3 25 25 H 1.08999 * 109.47567 * 54.39797 * 1 2 3 26 26 H 1.09003 * 109.47131 * 240.00132 * 2 1 3 27 27 H 1.09002 * 109.47342 * 120.00058 * 2 1 3 28 28 H 0.96998 * 119.99933 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00415 * 329.43209 * 13 3 2 30 30 H 1.09000 * 109.46899 * 304.89531 * 14 13 3 31 31 H 1.09004 * 109.46680 * 64.88860 * 14 13 3 32 32 H 1.08000 * 120.00354 * 180.29734 * 18 16 15 33 33 H 1.08001 * 119.98340 * 179.70299 * 19 18 16 34 34 H 1.07993 * 119.98287 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5965 1.9847 -0.8351 5 6 3.5405 1.4448 -0.1397 6 1 4.1540 1.8865 0.6316 7 6 4.1304 0.8780 -1.2496 8 7 3.3833 0.3402 -2.1888 9 14 5.9907 0.8740 -1.4191 10 1 6.5901 0.1364 -0.2781 11 1 6.3703 0.2096 -2.6917 12 1 6.4904 2.2723 -1.4219 13 7 1.6646 2.0945 1.2617 14 6 1.5730 3.5512 1.0947 15 6 1.3051 4.1942 2.4310 16 6 0.0023 4.3988 2.8525 17 9 -1.0296 4.0227 2.0658 18 6 -0.2424 4.9840 4.0831 19 6 0.8136 5.3745 4.8850 20 6 2.1141 5.1757 4.4617 21 6 2.3605 4.5853 3.2345 22 17 3.9945 4.3350 2.7043 23 1 -0.3634 -1.0227 -0.1003 24 1 -0.3633 0.4245 0.9359 25 1 -0.3634 0.5982 -0.8355 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.7983 -0.0588 -2.9695 29 1 0.8008 1.7167 1.6210 30 1 2.5116 3.9303 0.6906 31 1 0.7600 3.7877 0.4082 32 1 -1.2584 5.1396 4.4147 33 1 0.6224 5.8353 5.8428 34 1 2.9385 5.4807 5.0891 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182929.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:09 Heat of formation + Delta-G solvation = -34.472014 kcal Electronic energy + Delta-G solvation = -18689.595846 eV Core-core repulsion = 15562.357061 eV Total energy + Delta-G solvation = -3127.238785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.83524 -39.15768 -36.31310 -36.11875 -33.14421 -31.61683 -30.37444 -29.88564 -26.69319 -24.67642 -22.75398 -22.60429 -21.14476 -19.53165 -17.63332 -16.73327 -16.17236 -15.84069 -15.60321 -14.76928 -14.62600 -14.38639 -13.87898 -13.60267 -13.23499 -12.98937 -12.62007 -12.19092 -12.14239 -11.93092 -11.35304 -11.24116 -11.17415 -10.98127 -10.79534 -10.64340 -10.41121 -9.89822 -9.69693 -9.60925 -9.08009 -8.67589 -8.63453 -8.30079 -7.23015 -5.92248 -3.95425 1.04614 1.11856 2.35211 3.36627 3.40619 3.44055 3.46646 4.28248 4.48632 4.70538 4.82572 4.92477 5.19476 5.35746 5.48288 5.58781 5.82200 5.90101 6.05595 6.16221 6.19999 6.20424 6.33358 6.45040 6.51025 6.76827 6.88321 7.10889 7.20498 7.49865 7.80666 7.96797 8.28304 8.41941 8.76331 9.12864 9.68921 11.13390 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.006724 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.334527 B = 4162.885359 C = 5362.785838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.221 3.779 4 H 0.002 0.998 5 C -0.489 4.489 6 H 0.065 0.935 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.673 5.673 14 C 0.099 3.901 15 C -0.093 4.093 16 C 0.110 3.890 17 F -0.133 7.133 18 C -0.156 4.156 19 C -0.090 4.090 20 C -0.127 4.127 21 C 0.008 3.992 22 Cl -0.037 7.037 23 H 0.037 0.963 24 H 0.034 0.966 25 H 0.042 0.958 26 H 0.101 0.899 27 H 0.041 0.959 28 H 0.259 0.741 29 H 0.317 0.683 30 H 0.096 0.904 31 H 0.030 0.970 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 9.343 11.985 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C 0.114 3.886 4 H 0.020 0.980 5 C -0.528 4.528 6 H 0.083 0.917 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.304 5.304 14 C -0.031 4.031 15 C -0.096 4.096 16 C 0.090 3.910 17 F -0.112 7.112 18 C -0.175 4.175 19 C -0.108 4.108 20 C -0.146 4.146 21 C -0.020 4.020 22 Cl -0.008 7.008 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.048 0.952 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.866 9.213 11.927 15.837 hybrid contribution 0.045 -0.088 -0.815 0.821 sum -4.821 9.125 11.112 15.165 Atomic orbital electron populations 1.21879 0.99613 0.99682 0.99568 1.21766 0.91201 1.00250 1.03130 1.19170 0.95627 0.89936 0.83900 0.98018 1.21191 0.91122 1.36150 1.04303 0.91727 1.24940 0.97872 0.95772 0.95928 1.69859 1.34652 1.39553 1.09712 0.86657 0.86096 0.78121 0.77113 1.20336 1.21495 1.20458 1.60746 1.36131 1.00338 1.33202 1.20821 1.01992 0.91038 0.89230 1.20053 0.90347 0.99890 0.99276 1.17430 0.83608 0.99955 0.90036 1.91507 1.56812 1.89238 1.73606 1.21143 1.00855 1.01902 0.93576 1.20842 0.91240 0.99182 0.99563 1.21104 0.97822 1.00609 0.95041 1.20622 0.87042 0.99746 0.94599 1.98419 1.17334 1.95062 1.89952 0.94398 0.94672 0.93884 0.88124 0.94025 0.93101 0.86633 0.88547 0.95156 0.84605 0.84538 0.84609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.65 37.15 0.36 -2.62 16 2 C -0.12 -2.97 5.36 -26.73 -0.14 -3.12 16 3 C 0.22 5.50 2.02 -68.87 -0.14 5.36 16 4 H 0.00 0.06 7.85 -51.93 -0.41 -0.35 16 5 C -0.49 -13.39 8.57 -34.44 -0.30 -13.68 16 6 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.61 11.28 55.43 0.63 -24.98 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.67 -14.48 6.26 -109.22 -0.68 -15.17 16 14 C 0.10 1.93 5.01 -4.98 -0.02 1.90 16 15 C -0.09 -1.54 5.44 -104.52 -0.57 -2.11 16 16 C 0.11 1.62 7.24 -39.43 -0.29 1.34 16 17 F -0.13 -2.09 16.47 2.25 0.04 -2.06 16 18 C -0.16 -1.79 10.03 -39.51 -0.40 -2.19 16 19 C -0.09 -0.91 10.04 -39.60 -0.40 -1.31 16 20 C -0.13 -1.50 9.83 -39.54 -0.39 -1.89 16 21 C 0.01 0.11 6.31 -39.50 -0.25 -0.13 16 22 Cl -0.04 -0.62 27.30 -51.86 -1.42 -2.03 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.03 0.64 6.65 -51.93 -0.35 0.29 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.10 2.68 5.93 -51.93 -0.31 2.37 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.32 6.45 6.64 -39.29 -0.26 6.19 16 30 H 0.10 2.03 6.70 -51.93 -0.35 1.68 16 31 H 0.03 0.60 7.63 -51.93 -0.40 0.20 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -28.62 303.07 -8.66 -37.29 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.15 Total: 2.73 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -2.62 Total: -17.03 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.06 Total: -40.15 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.42 Total: -2.03 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.62 -8.66 -37.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182929.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.813 kcal (2) G-P(sol) polarization free energy of solvation -28.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds