Wall clock time and date at job start Mon Mar 30 2020 01:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50698 * 109.46704 * 185.02706 * 14 13 3 16 16 C 1.38265 * 119.98258 * 90.00063 * 15 14 13 17 17 C 1.38211 * 120.06838 * 179.97438 * 16 15 14 18 18 C 1.38329 * 120.00834 * 0.03876 * 17 16 15 19 19 Cl 1.73595 * 120.02199 * 179.97438 * 18 17 16 20 20 C 1.38547 * 119.95118 * 359.97438 * 18 17 16 21 21 F 1.35095 * 120.02884 * 180.02562 * 20 18 17 22 22 C 1.38194 * 119.97272 * 269.72122 * 15 14 13 23 23 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 24 24 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 25 25 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 26 26 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 27 27 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 28 28 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 29 29 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 30 30 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 31 31 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 32 32 H 1.08007 * 119.96337 * 359.97331 * 16 15 14 33 33 H 1.07991 * 119.99526 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.00749 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5154 -3.5835 16 6 2.7967 3.7432 -3.8157 17 6 2.4730 4.4648 -4.9492 18 6 1.5553 3.9593 -5.8525 19 17 1.1479 4.8656 -7.2759 20 6 0.9615 2.7292 -5.6202 21 9 0.0655 2.2339 -6.5016 22 6 1.2921 2.0053 -4.4873 23 1 -0.3633 -1.0237 0.0898 24 1 -0.3633 0.5896 0.8417 25 1 -0.3633 0.4342 -0.9314 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.0722 0.4283 1.9219 29 1 0.6931 1.8857 -1.4926 30 1 3.5861 1.9537 -2.0570 31 1 2.4645 0.6641 -2.5543 32 1 3.5128 4.1388 -3.1106 33 1 2.9363 5.4234 -5.1296 34 1 0.8332 1.0444 -4.3074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054184084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:29 Heat of formation + Delta-G solvation = -39.426408 kcal Electronic energy + Delta-G solvation = -18163.446564 eV Core-core repulsion = 15035.992940 eV Total energy + Delta-G solvation = -3127.453624 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.02582 -39.38850 -37.04735 -36.48589 -33.33934 -31.40406 -30.78222 -29.77832 -26.39479 -24.34457 -23.63348 -23.02788 -21.42030 -19.59127 -17.68525 -16.85618 -16.70482 -16.41081 -15.84047 -15.02573 -14.43550 -14.13498 -13.90338 -13.69651 -13.29330 -13.17333 -13.08557 -12.57843 -12.41987 -12.09170 -11.75018 -11.36471 -11.29275 -11.10818 -11.00151 -10.79144 -10.33147 -10.16713 -10.08774 -9.93290 -9.08266 -8.74838 -8.63054 -8.28559 -7.46350 -6.33882 -4.04473 0.88424 1.01351 1.87833 3.35914 3.44452 3.44864 3.63831 3.96581 4.49323 4.52500 4.72788 4.99808 5.12728 5.26011 5.37352 5.46146 5.63138 5.75200 5.90514 5.94620 5.99665 6.04231 6.08593 6.25526 6.47330 6.60181 6.63479 6.89617 6.95787 7.15981 7.25145 7.79207 8.17133 8.33619 8.58113 8.87876 9.63916 11.02286 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031043 B = 0.003905 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.751828 B = 7168.952905 C = 7478.605284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.154 4.154 3 C 0.204 3.796 4 H 0.029 0.971 5 C -0.572 4.572 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.669 5.669 14 C 0.089 3.911 15 C -0.030 4.030 16 C -0.096 4.096 17 C -0.084 4.084 18 C -0.081 4.081 19 Cl -0.061 7.061 20 C 0.107 3.893 21 F -0.131 7.131 22 C -0.141 4.141 23 H 0.028 0.972 24 H 0.073 0.927 25 H 0.032 0.968 26 H 0.021 0.979 27 H 0.068 0.932 28 H 0.269 0.731 29 H 0.331 0.669 30 H 0.081 0.919 31 H 0.034 0.966 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.932 3.566 -15.667 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.194 4.194 3 C 0.096 3.904 4 H 0.046 0.954 5 C -0.610 4.610 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.300 5.300 14 C -0.041 4.041 15 C -0.031 4.031 16 C -0.115 4.115 17 C -0.102 4.102 18 C -0.109 4.109 19 Cl -0.032 7.032 20 C 0.087 3.913 21 F -0.110 7.110 22 C -0.160 4.160 23 H 0.047 0.953 24 H 0.092 0.908 25 H 0.051 0.949 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.149 0.851 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.693 4.287 -14.004 14.662 hybrid contribution -0.508 -1.072 -2.227 2.523 sum -1.201 3.215 -16.231 16.589 Atomic orbital electron populations 1.21599 0.96710 0.99224 1.01426 1.22279 0.96244 1.01355 0.99526 1.19386 0.95785 0.88438 0.86818 0.95353 1.21784 1.30146 1.18146 0.90961 0.92633 1.25709 0.95739 0.97043 1.00003 1.70824 1.24508 1.24416 1.35587 0.83566 0.75552 0.75615 0.75743 1.20970 1.21488 1.21526 1.60838 1.04870 1.62310 1.01974 1.20980 0.99014 0.95273 0.88784 1.20019 0.93501 0.94681 0.94868 1.21152 1.00306 0.93762 0.96276 1.20976 0.95891 1.00433 0.92934 1.20937 1.03026 0.93892 0.93062 1.98368 1.93067 1.73788 1.37991 1.17347 0.91770 0.92412 0.89788 1.91518 1.65058 1.87242 1.67140 1.21065 1.00306 1.01367 0.93276 0.95273 0.90785 0.94928 0.96021 0.91371 0.91949 0.85074 0.90112 0.94832 0.84039 0.84095 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.38 37.16 0.35 -2.28 16 2 C -0.15 -3.31 5.45 -26.73 -0.15 -3.46 16 3 C 0.20 4.70 1.95 -68.86 -0.13 4.57 16 4 H 0.03 0.72 7.32 -51.93 -0.38 0.34 16 5 C -0.57 -14.99 7.18 -34.44 -0.25 -15.24 16 6 H 0.06 1.50 7.82 -52.48 -0.41 1.09 16 7 C 0.02 0.51 5.29 -17.82 -0.09 0.41 16 8 N -0.92 -26.21 13.21 55.43 0.73 -25.48 16 9 Si 1.07 24.41 29.91 -169.99 -5.08 19.33 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 13 N -0.67 -13.05 6.18 -109.22 -0.67 -13.73 16 14 C 0.09 1.41 5.60 -4.98 -0.03 1.38 16 15 C -0.03 -0.41 5.44 -104.63 -0.57 -0.98 16 16 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 17 C -0.08 -0.95 9.83 -39.56 -0.39 -1.34 16 18 C -0.08 -1.02 6.33 -39.43 -0.25 -1.27 16 19 Cl -0.06 -0.70 28.62 -51.86 -1.48 -2.19 16 20 C 0.11 1.42 7.28 -39.39 -0.29 1.14 16 21 F -0.13 -1.80 16.84 2.25 0.04 -1.76 16 22 C -0.14 -1.85 9.68 -39.52 -0.38 -2.23 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 1.64 6.88 -51.93 -0.36 1.28 16 25 H 0.03 0.58 6.68 -51.93 -0.35 0.23 16 26 H 0.02 0.42 7.13 -51.93 -0.37 0.05 16 27 H 0.07 1.63 6.17 -51.93 -0.32 1.31 16 28 H 0.27 7.59 5.62 -40.82 -0.23 7.36 16 29 H 0.33 6.29 6.79 -39.29 -0.27 6.02 16 30 H 0.08 1.29 7.89 -51.93 -0.41 0.88 16 31 H 0.03 0.52 7.14 -51.93 -0.37 0.15 16 32 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 33 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 300.92 15.07 4.53 4.53 Total: -1.00 -27.71 300.92 -8.45 -36.16 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -3.95 Total: 4.02 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.56 Total: -20.89 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.06 Total: -39.21 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.08 Total: 19.33 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.19 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.71 -8.45 -36.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054184084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.265 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds