Wall clock time and date at job start Mon Mar 30 2020 01:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47149 * 2 1 4 4 H 1.08995 * 109.46840 * 175.06495 * 3 2 1 5 5 C 1.50698 * 109.47095 * 55.06745 * 3 2 1 6 6 H 1.08003 * 119.99656 * 245.69463 * 5 3 2 7 7 C 1.37868 * 120.00305 * 65.70129 * 5 3 2 8 8 N 1.31517 * 120.00392 * 5.49310 * 7 5 3 9 9 Si 1.86807 * 120.00001 * 185.49572 * 7 5 3 10 10 H 1.48504 * 109.46902 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47104 * 299.99557 * 9 7 5 12 12 H 1.48497 * 109.46947 * 60.00017 * 9 7 5 13 13 N 1.46902 * 109.46840 * 295.06538 * 3 2 1 14 14 C 1.46900 * 110.99687 * 279.83053 * 13 3 2 15 15 C 1.50698 * 109.46704 * 185.02706 * 14 13 3 16 16 C 1.38265 * 119.98258 * 90.00063 * 15 14 13 17 17 C 1.38211 * 120.06838 * 179.97438 * 16 15 14 18 18 C 1.38329 * 120.00834 * 0.03876 * 17 16 15 19 19 Cl 1.73595 * 120.02199 * 179.97438 * 18 17 16 20 20 C 1.38547 * 119.95118 * 359.97438 * 18 17 16 21 21 F 1.35095 * 120.02884 * 180.02562 * 20 18 17 22 22 C 1.38194 * 119.97272 * 269.72122 * 15 14 13 23 23 H 1.08993 * 109.47295 * 185.01354 * 1 2 3 24 24 H 1.09003 * 109.46806 * 305.01089 * 1 2 3 25 25 H 1.08997 * 109.47055 * 65.00583 * 1 2 3 26 26 H 1.08992 * 109.47109 * 239.99684 * 2 1 3 27 27 H 1.09002 * 109.46673 * 119.99518 * 2 1 3 28 28 H 0.96999 * 119.99483 * 355.15096 * 8 7 5 29 29 H 1.00901 * 110.99934 * 43.78184 * 13 3 2 30 30 H 1.09001 * 109.47337 * 305.02008 * 14 13 3 31 31 H 1.09001 * 109.47342 * 65.02547 * 14 13 3 32 32 H 1.08007 * 119.96337 * 359.97331 * 16 15 14 33 33 H 1.07991 * 119.99526 * 180.02562 * 17 16 15 34 34 H 1.08001 * 120.00749 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1264 1.4437 0.0884 5 6 1.4404 2.1873 1.1648 6 1 0.7570 3.0048 0.9888 7 6 1.7644 1.8252 2.4550 8 7 2.6774 0.9033 2.6698 9 14 0.9065 2.6440 3.8983 10 1 1.4299 2.0816 5.1692 11 1 1.1620 4.1063 3.8613 12 1 -0.5548 2.3944 3.8119 13 7 1.6500 2.0997 -1.2546 14 6 2.5596 1.7300 -2.3473 15 6 2.2047 2.5154 -3.5835 16 6 2.7967 3.7432 -3.8157 17 6 2.4730 4.4648 -4.9492 18 6 1.5553 3.9593 -5.8525 19 17 1.1479 4.8656 -7.2759 20 6 0.9615 2.7292 -5.6202 21 9 0.0655 2.2339 -6.5016 22 6 1.2921 2.0053 -4.4873 23 1 -0.3633 -1.0237 0.0898 24 1 -0.3633 0.5896 0.8417 25 1 -0.3633 0.4342 -0.9314 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.0722 0.4283 1.9219 29 1 0.6931 1.8857 -1.4926 30 1 3.5861 1.9537 -2.0570 31 1 2.4645 0.6641 -2.5543 32 1 3.5128 4.1388 -3.1106 33 1 2.9363 5.4234 -5.1296 34 1 0.8332 1.0444 -4.3074 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054184084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:28 Heat of formation + Delta-G solvation = -54.108586 kcal Electronic energy + Delta-G solvation = -18164.083231 eV Core-core repulsion = 15035.992940 eV Total energy + Delta-G solvation = -3128.090291 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.05685 -40.43939 -38.54289 -37.59581 -34.93903 -33.05384 -31.81937 -31.12908 -28.05605 -25.93586 -25.34902 -24.02123 -22.56068 -21.37395 -19.03078 -18.41547 -17.76562 -17.45267 -16.88854 -16.53880 -15.93680 -15.54454 -15.40163 -14.98376 -14.78122 -14.52676 -14.28154 -13.92686 -13.71876 -13.54800 -13.15359 -12.83270 -12.58693 -12.43831 -12.38848 -12.02720 -11.96687 -11.90089 -11.87350 -11.66305 -10.63984 -10.32936 -10.05868 -9.69910 -9.05054 -8.46428 -6.17365 -0.13630 0.03917 0.92288 1.58638 1.64560 1.83459 2.34334 2.63199 2.96614 3.29462 3.46860 3.64699 3.82944 4.01247 4.13661 4.32679 4.36104 4.45528 4.49023 4.54718 4.72127 4.77998 4.90990 4.95146 5.01130 5.12895 5.23137 5.41167 5.44113 5.57094 5.63550 5.97419 6.24495 6.56271 6.71912 6.82195 7.58074 8.90428 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.031043 B = 0.003905 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.751828 B = 7168.952905 C = 7478.605284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.147 4.147 3 C 0.208 3.792 4 H 0.000 1.000 5 C -0.574 4.574 6 H 0.045 0.955 7 C -0.027 4.027 8 N -0.943 5.943 9 Si 1.106 2.894 10 H -0.290 1.290 11 H -0.277 1.277 12 H -0.273 1.273 13 N -0.674 5.674 14 C 0.094 3.906 15 C -0.041 4.041 16 C -0.097 4.097 17 C -0.076 4.076 18 C -0.084 4.084 19 Cl -0.052 7.052 20 C 0.095 3.905 21 F -0.136 7.136 22 C -0.139 4.139 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.260 0.740 29 H 0.335 0.665 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.149 0.851 33 H 0.168 0.832 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.592 4.312 -16.832 17.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.187 4.187 3 C 0.099 3.901 4 H 0.018 0.982 5 C -0.612 4.612 6 H 0.063 0.937 7 C -0.225 4.225 8 N -0.582 5.582 9 Si 0.930 3.070 10 H -0.215 1.215 11 H -0.202 1.202 12 H -0.198 1.198 13 N -0.305 5.305 14 C -0.035 4.035 15 C -0.042 4.042 16 C -0.116 4.116 17 C -0.094 4.094 18 C -0.112 4.112 19 Cl -0.023 7.023 20 C 0.075 3.925 21 F -0.114 7.114 22 C -0.159 4.159 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.154 0.846 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.167 0.833 33 H 0.185 0.815 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.362 5.040 -15.203 16.075 hybrid contribution -0.282 -1.266 -1.983 2.370 sum -1.644 3.774 -17.187 17.673 Atomic orbital electron populations 1.21511 0.95234 1.00175 1.01374 1.22135 0.97461 0.99975 0.99081 1.19140 0.93800 0.89372 0.87803 0.98190 1.22050 1.29332 1.17664 0.92201 0.93680 1.26866 0.95758 0.97093 1.02778 1.70918 1.26129 1.25856 1.35328 0.83045 0.75530 0.75410 0.73015 1.21550 1.20239 1.19848 1.60671 1.05681 1.62237 1.01918 1.20917 0.97955 0.96124 0.88469 1.19811 0.94758 0.95282 0.94339 1.21306 1.00155 0.93334 0.96786 1.21212 0.95141 1.01123 0.91922 1.21113 1.02857 0.93726 0.93477 1.98374 1.93008 1.73464 1.37504 1.17453 0.92181 0.92929 0.89954 1.91506 1.65271 1.87373 1.67265 1.21107 0.99973 1.01719 0.93055 0.93348 0.93415 0.92790 0.93858 0.94321 0.92891 0.84640 0.90565 0.94105 0.83278 0.81490 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.38 71.98 0.68 -4.15 16 2 C -0.15 -6.25 5.45 30.59 0.17 -6.08 16 3 C 0.21 9.63 1.95 44.17 0.09 9.71 16 4 H 0.00 0.01 7.32 -2.39 -0.02 -0.01 16 5 C -0.57 -30.26 7.18 25.60 0.18 -30.07 16 6 H 0.04 2.43 7.82 -2.91 -0.02 2.40 16 7 C -0.03 -1.46 5.29 84.65 0.45 -1.01 16 8 N -0.94 -55.01 13.21 21.44 0.28 -54.73 16 9 Si 1.11 49.10 29.91 68.60 2.05 51.15 16 10 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 12 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 13 N -0.67 -25.74 6.18 -499.47 -3.09 -28.83 16 14 C 0.09 2.89 5.60 85.56 0.48 3.37 16 15 C -0.04 -1.07 5.44 -19.87 -0.11 -1.17 16 16 C -0.10 -2.23 9.70 22.27 0.22 -2.02 16 17 C -0.08 -1.53 9.83 22.29 0.22 -1.31 16 18 C -0.08 -1.91 6.33 22.37 0.14 -1.77 16 19 Cl -0.05 -1.10 28.62 -2.72 -0.08 -1.18 16 20 C 0.09 2.35 7.28 22.39 0.16 2.52 16 21 F -0.14 -3.51 16.84 44.97 0.76 -2.75 16 22 C -0.14 -3.42 9.68 22.31 0.22 -3.20 16 23 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 2.07 6.88 -2.39 -0.02 2.06 16 25 H 0.05 1.81 6.68 -2.39 -0.02 1.80 16 26 H 0.04 1.63 7.13 -2.39 -0.02 1.61 16 27 H 0.04 1.87 6.17 -2.39 -0.01 1.86 16 28 H 0.26 15.15 5.62 -92.71 -0.52 14.63 16 29 H 0.33 12.24 6.79 -89.69 -0.61 11.63 16 30 H 0.08 2.39 7.89 -2.39 -0.02 2.37 16 31 H 0.04 1.20 7.14 -2.39 -0.02 1.18 16 32 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 33 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -58.96 300.92 3.58 -55.39 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.76 Total: 16.13 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 2.89 Total: -35.19 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -2.80 Total: -83.56 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.76 Total: -2.75 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 2.05 Total: 51.15 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -58.96 3.58 -55.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054184084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.280 kcal (2) G-P(sol) polarization free energy of solvation -58.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds