Wall clock time and date at job start Mon Mar 30 2020 01:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46904 * 111.00430 * 183.95351 * 12 2 1 14 14 C 1.46902 * 110.99995 * 59.99995 * 12 2 1 15 15 C 1.50699 * 109.47426 * 190.00400 * 14 12 2 16 16 C 1.38463 * 120.01661 * 269.72435 * 15 14 12 17 17 F 1.35102 * 120.01789 * 359.97438 * 16 15 14 18 18 C 1.38447 * 119.95788 * 179.69935 * 16 15 14 19 19 C 1.38216 * 120.00167 * 0.57308 * 18 16 15 20 20 C 1.38204 * 120.04199 * 359.72841 * 19 18 16 21 21 C 1.38291 * 120.02207 * 90.00033 * 15 14 12 22 22 Cl 1.73602 * 119.99754 * 359.97438 * 21 15 14 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46649 * 60.00159 * 13 12 2 28 28 H 1.08997 * 109.47179 * 180.02562 * 13 12 2 29 29 H 1.09001 * 109.46814 * 300.00363 * 13 12 2 30 30 H 1.08999 * 109.47127 * 310.00477 * 14 12 2 31 31 H 1.09007 * 109.47146 * 70.00046 * 14 12 2 32 32 H 1.08000 * 119.99590 * 180.30278 * 18 16 15 33 33 H 1.08011 * 119.98308 * 179.70023 * 19 18 16 34 34 H 1.07992 * 119.98260 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1993 13 6 3.4852 -0.7945 -1.1869 14 6 1.5487 -0.0264 -2.4210 15 6 1.8580 -0.8912 -3.6158 16 6 3.0618 -0.7445 -4.2841 17 9 3.9595 0.1744 -3.8657 18 6 3.3473 -1.5438 -5.3778 19 6 2.4260 -2.4795 -5.8093 20 6 1.2219 -2.6217 -5.1461 21 6 0.9374 -1.8278 -4.0489 22 17 -0.5749 -2.0081 -3.2157 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7081 1.1610 3.4844 27 1 3.8030 -1.3532 -0.3065 28 1 3.8210 -1.3109 -2.0861 29 1 3.9187 0.2052 -1.1590 30 1 0.4723 0.1324 -2.3564 31 1 2.0520 0.9346 -2.5280 32 1 4.2881 -1.4333 -5.8965 33 1 2.6471 -3.0997 -6.6655 34 1 0.5029 -3.3534 -5.4838 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057846687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:59 Heat of formation + Delta-G solvation = -17.817212 kcal Electronic energy + Delta-G solvation = -18981.187052 eV Core-core repulsion = 15854.670473 eV Total energy + Delta-G solvation = -3126.516578 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.84805 -39.27109 -36.83133 -36.21427 -33.09674 -31.33578 -30.38661 -28.99229 -26.89464 -24.67427 -23.57563 -22.68628 -21.35173 -19.35282 -17.65745 -16.71081 -16.34228 -15.86987 -15.63204 -15.00591 -14.63977 -13.99471 -13.79197 -13.76648 -13.38589 -12.93685 -12.63003 -12.34874 -12.09058 -11.63302 -11.32385 -11.22581 -11.11869 -10.95834 -10.75117 -10.65623 -10.43354 -10.07602 -10.00050 -9.81568 -8.91987 -8.69985 -8.66050 -8.37294 -7.16872 -5.98281 -4.02543 1.02644 1.10118 2.27031 3.34275 3.38312 3.40931 3.44541 4.28002 4.43458 4.68421 4.80105 4.89087 5.15153 5.23810 5.35139 5.48784 5.74347 5.87377 6.03415 6.13887 6.15097 6.24864 6.28981 6.48893 6.72758 6.82196 6.89246 7.10152 7.17348 7.53801 7.72636 7.85380 8.21672 8.33844 8.60116 9.03069 9.61997 11.08509 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024674 B = 0.005861 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.538831 B = 4776.475230 C = 5339.537950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.214 3.786 3 H -0.002 1.002 4 C -0.502 4.502 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.523 5.523 13 C 0.037 3.963 14 C 0.079 3.921 15 C -0.088 4.088 16 C 0.113 3.887 17 F -0.131 7.131 18 C -0.155 4.155 19 C -0.090 4.090 20 C -0.126 4.126 21 C 0.007 3.993 22 Cl -0.044 7.044 23 H 0.036 0.964 24 H 0.007 0.993 25 H 0.084 0.916 26 H 0.260 0.740 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.014 0.986 30 H 0.096 0.904 31 H 0.036 0.964 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.107 -4.810 -16.422 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.108 3.892 3 H 0.016 0.984 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.248 5.248 13 C -0.111 4.111 14 C -0.049 4.049 15 C -0.091 4.091 16 C 0.093 3.907 17 F -0.109 7.109 18 C -0.174 4.174 19 C -0.108 4.108 20 C -0.145 4.145 21 C -0.021 4.021 22 Cl -0.015 7.015 23 H 0.055 0.945 24 H 0.026 0.974 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.033 0.967 30 H 0.115 0.885 31 H 0.054 0.946 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.721 -5.128 -16.140 16.950 hybrid contribution 0.745 0.522 0.993 1.347 sum 1.466 -4.605 -15.146 15.898 Atomic orbital electron populations 1.21829 0.97543 0.99768 0.99695 1.19261 0.92437 0.91942 0.85520 0.98416 1.21095 1.31036 1.12253 0.89657 0.91915 1.24913 0.95228 0.95081 0.98949 1.69882 1.36881 1.23039 1.23474 0.86585 0.79057 0.79773 0.82129 1.20380 1.21382 1.20235 1.62220 1.09314 1.52139 1.01138 1.22267 0.88713 0.99256 1.00898 1.21136 1.02602 0.93087 0.88054 1.19944 0.92443 0.98518 0.98151 1.17391 0.87492 0.90478 0.95323 1.91522 1.65914 1.63904 1.89575 1.21155 1.01527 0.97580 0.97174 1.20840 0.92662 0.97624 0.99692 1.21080 0.98230 0.99973 0.95202 1.20563 0.89510 0.97304 0.94725 1.98398 1.28896 1.96466 1.77691 0.94498 0.97388 0.89733 0.92961 0.90550 0.94300 0.96712 0.88549 0.94563 0.84550 0.84491 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.76 37.16 0.33 -2.88 16 2 C 0.21 5.48 2.06 -68.87 -0.14 5.34 16 3 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 4 C -0.50 -13.87 7.93 -34.44 -0.27 -14.14 16 5 H 0.06 1.73 6.39 -52.49 -0.34 1.40 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.63 11.32 55.43 0.63 -25.00 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 N -0.52 -11.59 4.61 -237.72 -1.10 -12.69 16 13 C 0.04 0.78 8.24 60.07 0.50 1.27 16 14 C 0.08 1.52 4.38 -4.98 -0.02 1.50 16 15 C -0.09 -1.45 4.89 -104.52 -0.51 -1.96 16 16 C 0.11 1.69 5.90 -39.42 -0.23 1.46 16 17 F -0.13 -2.11 15.10 2.25 0.03 -2.08 16 18 C -0.16 -1.80 10.03 -39.51 -0.40 -2.19 16 19 C -0.09 -0.90 10.04 -39.60 -0.40 -1.30 16 20 C -0.13 -1.45 9.83 -39.54 -0.39 -1.84 16 21 C 0.01 0.10 6.31 -39.51 -0.25 -0.15 16 22 Cl -0.04 -0.68 27.30 -51.86 -1.42 -2.09 16 23 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.01 0.16 6.20 -51.93 -0.32 -0.16 16 25 H 0.08 2.28 6.07 -51.93 -0.32 1.96 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.08 1.68 6.23 -51.93 -0.32 1.36 16 28 H 0.04 0.73 5.59 -51.93 -0.29 0.44 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 1.86 4.59 -51.93 -0.24 1.63 16 31 H 0.04 0.71 7.61 -51.92 -0.40 0.32 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 292.47 15.07 4.41 4.41 Total: -1.00 -29.14 292.47 -8.24 -37.38 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -3.89 Total: -3.11 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -1.89 Total: -13.34 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: -0.47 Total: -37.69 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.03 Total: -2.08 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.42 Total: -2.09 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.14 -8.24 -37.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057846687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.561 kcal (2) G-P(sol) polarization free energy of solvation -29.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds