Wall clock time and date at job start Mon Mar 30 2020 01:19:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3
5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1
6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1
7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2
8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2
9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4
10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4
11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4
12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3
13 13 C 1.46904 * 111.00430 * 183.95351 * 12 2 1
14 14 C 1.46902 * 110.99995 * 59.99995 * 12 2 1
15 15 C 1.50699 * 109.47426 * 190.00400 * 14 12 2
16 16 C 1.38463 * 120.01661 * 269.72435 * 15 14 12
17 17 F 1.35102 * 120.01789 * 359.97438 * 16 15 14
18 18 C 1.38447 * 119.95788 * 179.69935 * 16 15 14
19 19 C 1.38216 * 120.00167 * 0.57308 * 18 16 15
20 20 C 1.38204 * 120.04199 * 359.72841 * 19 18 16
21 21 C 1.38291 * 120.02207 * 90.00033 * 15 14 12
22 22 Cl 1.73602 * 119.99754 * 359.97438 * 21 15 14
23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4
27 27 H 1.09003 * 109.46649 * 60.00159 * 13 12 2
28 28 H 1.08997 * 109.47179 * 180.02562 * 13 12 2
29 29 H 1.09001 * 109.46814 * 300.00363 * 13 12 2
30 30 H 1.08999 * 109.47127 * 310.00477 * 14 12 2
31 31 H 1.09007 * 109.47146 * 70.00046 * 14 12 2
32 32 H 1.08000 * 119.99590 * 180.30278 * 18 16 15
33 33 H 1.08011 * 119.98308 * 179.70023 * 19 18 16
34 34 H 1.07992 * 119.98260 * 180.02562 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2306
5 1 2.6533 -1.5885 1.1315
6 6 1.6993 -0.2393 2.4828
7 7 0.9428 0.8297 2.6034
8 14 2.3213 -1.1202 4.0081
9 1 3.8063 -1.1207 4.0082
10 1 1.8260 -0.4204 5.2205
11 1 1.8259 -2.5201 4.0078
12 7 2.0197 -0.6925 -1.1993
13 6 3.4852 -0.7945 -1.1869
14 6 1.5487 -0.0264 -2.4210
15 6 1.8580 -0.8912 -3.6158
16 6 3.0618 -0.7445 -4.2841
17 9 3.9595 0.1744 -3.8657
18 6 3.3473 -1.5438 -5.3778
19 6 2.4260 -2.4795 -5.8093
20 6 1.2219 -2.6217 -5.1461
21 6 0.9374 -1.8278 -4.0489
22 17 -0.5749 -2.0081 -3.2157
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3634 0.5139 0.8900
26 1 0.7081 1.1610 3.4844
27 1 3.8030 -1.3532 -0.3065
28 1 3.8210 -1.3109 -2.0861
29 1 3.9187 0.2052 -1.1590
30 1 0.4723 0.1324 -2.3564
31 1 2.0520 0.9346 -2.5280
32 1 4.2881 -1.4333 -5.8965
33 1 2.6471 -3.0997 -6.6655
34 1 0.5029 -3.3534 -5.4838
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000057846687.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:19:59
Heat of formation + Delta-G solvation = -34.784344 kcal
Electronic energy + Delta-G solvation = -18981.922802 eV
Core-core repulsion = 15854.670473 eV
Total energy + Delta-G solvation = -3127.252328 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.083 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-50.00717 -40.39102 -38.52239 -37.33047 -35.00922 -32.77090 -31.39996 -30.88143
-28.50194 -26.62522 -25.17955 -23.73483 -22.70964 -21.18312 -18.77135 -18.36140
-17.80799 -17.28590 -16.86701 -16.61300 -15.84885 -15.70937 -15.40925 -15.21645
-14.55214 -14.30916 -14.12176 -14.00240 -13.65763 -13.01234 -12.94747 -12.72939
-12.65821 -12.58702 -12.28817 -12.25919 -12.13433 -11.98013 -11.88124 -11.50454
-10.92772 -10.53223 -9.82973 -9.67079 -9.00383 -8.11395 -6.23451 0.03790
0.07245 1.17693 1.41913 1.44005 1.51486 2.39828 2.47324 3.16546
3.25235 3.39011 3.64584 3.79838 3.94423 4.27371 4.42448 4.42608
4.54319 4.61812 4.68284 4.87112 4.93423 5.00022 5.03498 5.11950
5.20720 5.21501 5.24826 5.48022 5.70259 5.74903 5.77788 6.22944
6.32907 6.64704 6.89214 7.45191 8.94562
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.024674 B = 0.005861 C = 0.005243
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1134.538831 B = 4776.475230 C = 5339.537950
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C 0.218 3.782
3 H -0.041 1.041
4 C -0.519 4.519
5 H 0.059 0.941
6 C 0.012 3.988
7 N -0.920 5.920
8 Si 0.961 3.039
9 H -0.272 1.272
10 H -0.283 1.283
11 H -0.271 1.271
12 N -0.525 5.525
13 C 0.047 3.953
14 C 0.085 3.915
15 C -0.117 4.117
16 C 0.091 3.909
17 F -0.146 7.146
18 C -0.145 4.145
19 C -0.068 4.068
20 C -0.118 4.118
21 C -0.008 4.008
22 Cl -0.061 7.061
23 H 0.033 0.967
24 H 0.026 0.974
25 H 0.059 0.941
26 H 0.262 0.738
27 H 0.062 0.938
28 H 0.061 0.939
29 H 0.003 0.997
30 H 0.090 0.910
31 H 0.022 0.978
32 H 0.167 0.833
33 H 0.186 0.814
34 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.876 -6.914 -18.459 19.801
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.171 4.171
2 C 0.112 3.888
3 H -0.023 1.023
4 C -0.558 4.558
5 H 0.077 0.923
6 C -0.187 4.187
7 N -0.560 5.560
8 Si 0.786 3.214
9 H -0.197 1.197
10 H -0.209 1.209
11 H -0.196 1.196
12 N -0.250 5.250
13 C -0.102 4.102
14 C -0.042 4.042
15 C -0.119 4.119
16 C 0.071 3.929
17 F -0.124 7.124
18 C -0.163 4.163
19 C -0.086 4.086
20 C -0.137 4.137
21 C -0.036 4.036
22 Cl -0.032 7.032
23 H 0.052 0.948
24 H 0.045 0.955
25 H 0.078 0.922
26 H 0.071 0.929
27 H 0.081 0.919
28 H 0.080 0.920
29 H 0.022 0.978
30 H 0.108 0.892
31 H 0.040 0.960
32 H 0.184 0.816
33 H 0.203 0.797
34 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges 1.493 -7.237 -18.197 19.640
hybrid contribution 0.526 1.161 1.476 1.950
sum 2.019 -6.076 -16.721 17.905
Atomic orbital electron populations
1.21591 0.96914 0.99286 0.99343 1.19059 0.92872 0.89956 0.86922
1.02329 1.21358 1.31274 1.12325 0.90798 0.92251 1.25708 0.95331
0.95749 1.01871 1.70016 1.37654 1.24175 1.24133 0.85569 0.78672
0.78701 0.78432 1.19730 1.20871 1.19646 1.62150 1.09868 1.51788
1.01147 1.22170 0.88109 0.98603 1.01286 1.21006 1.01787 0.93215
0.88226 1.19714 0.94293 0.99866 0.98032 1.17715 0.87004 0.91403
0.96815 1.91484 1.66268 1.64691 1.89979 1.21563 1.02954 0.96298
0.95495 1.21413 0.90924 0.96453 0.99807 1.21489 0.99387 0.99204
0.93587 1.20761 0.88754 0.98075 0.95984 1.98389 1.29913 1.96524
1.78338 0.94809 0.95549 0.92196 0.92901 0.91933 0.91988 0.97846
0.89219 0.96005 0.81580 0.79721 0.81790
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -5.76 8.76 71.98 0.63 -5.13 16
2 C 0.22 11.64 2.06 44.17 0.09 11.73 16
3 H -0.04 -2.44 8.14 -2.39 -0.02 -2.46 16
4 C -0.52 -29.40 7.93 25.60 0.20 -29.20 16
5 H 0.06 3.33 6.39 -2.91 -0.02 3.32 16
6 C 0.01 0.68 5.30 84.65 0.45 1.13 16
7 N -0.92 -54.06 11.32 21.44 0.24 -53.82 16
8 Si 0.96 44.54 29.54 68.60 2.03 46.56 16
9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16
10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16
11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16
12 N -0.53 -23.89 4.61 -906.02 -4.18 -28.07 16
13 C 0.05 2.00 8.24 127.69 1.05 3.06 16
14 C 0.09 3.38 4.38 85.56 0.38 3.76 16
15 C -0.12 -3.77 4.89 -19.80 -0.10 -3.87 16
16 C 0.09 2.57 5.90 22.37 0.13 2.70 16
17 F -0.15 -4.65 15.10 44.97 0.68 -3.98 16
18 C -0.14 -2.76 10.03 22.31 0.22 -2.54 16
19 C -0.07 -1.00 10.04 22.26 0.22 -0.78 16
20 C -0.12 -2.27 9.83 22.30 0.22 -2.05 16
21 C -0.01 -0.23 6.31 22.32 0.14 -0.09 16
22 Cl -0.06 -1.84 27.30 -2.72 -0.07 -1.91 16
23 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16
24 H 0.03 1.19 6.20 -2.39 -0.01 1.18 16
25 H 0.06 3.34 6.07 -2.38 -0.01 3.33 16
26 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16
27 H 0.06 2.81 6.23 -2.39 -0.01 2.80 16
28 H 0.06 2.34 5.59 -2.39 -0.01 2.33 16
29 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16
30 H 0.09 3.59 4.59 -2.39 -0.01 3.58 16
31 H 0.02 0.91 7.61 -2.38 -0.02 0.89 16
32 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16
33 H 0.19 1.07 8.06 -2.90 -0.02 1.05 16
34 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16
Total: -1.00 -65.18 292.47 3.45 -61.73
By element:
Atomic # 1 Polarization: -0.35 SS G_CDS: 1.12 Total: 0.77 kcal
Atomic # 6 Polarization: -24.92 SS G_CDS: 3.64 Total: -21.28 kcal
Atomic # 7 Polarization: -77.95 SS G_CDS: -3.94 Total: -81.89 kcal
Atomic # 9 Polarization: -4.65 SS G_CDS: 0.68 Total: -3.98 kcal
Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal
Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.91 kcal
Total: -65.18 3.45 -61.73 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000057846687.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.946 kcal
(2) G-P(sol) polarization free energy of solvation -65.184 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.238 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.731 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.784 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds