Wall clock time and date at job start Mon Mar 30 2020 01:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00159 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00675 * 8 6 4 12 12 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 13 13 C 1.46904 * 111.00430 * 183.95351 * 12 2 1 14 14 C 1.46902 * 110.99995 * 59.99995 * 12 2 1 15 15 C 1.50699 * 109.47426 * 190.00400 * 14 12 2 16 16 C 1.38463 * 120.01661 * 269.72435 * 15 14 12 17 17 F 1.35102 * 120.01789 * 359.97438 * 16 15 14 18 18 C 1.38447 * 119.95788 * 179.69935 * 16 15 14 19 19 C 1.38216 * 120.00167 * 0.57308 * 18 16 15 20 20 C 1.38204 * 120.04199 * 359.72841 * 19 18 16 21 21 C 1.38291 * 120.02207 * 90.00033 * 15 14 12 22 22 Cl 1.73602 * 119.99754 * 359.97438 * 21 15 14 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46649 * 60.00159 * 13 12 2 28 28 H 1.08997 * 109.47179 * 180.02562 * 13 12 2 29 29 H 1.09001 * 109.46814 * 300.00363 * 13 12 2 30 30 H 1.08999 * 109.47127 * 310.00477 * 14 12 2 31 31 H 1.09007 * 109.47146 * 70.00046 * 14 12 2 32 32 H 1.08000 * 119.99590 * 180.30278 * 18 16 15 33 33 H 1.08011 * 119.98308 * 179.70023 * 19 18 16 34 34 H 1.07992 * 119.98260 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.8063 -1.1207 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8259 -2.5201 4.0078 12 7 2.0197 -0.6925 -1.1993 13 6 3.4852 -0.7945 -1.1869 14 6 1.5487 -0.0264 -2.4210 15 6 1.8580 -0.8912 -3.6158 16 6 3.0618 -0.7445 -4.2841 17 9 3.9595 0.1744 -3.8657 18 6 3.3473 -1.5438 -5.3778 19 6 2.4260 -2.4795 -5.8093 20 6 1.2219 -2.6217 -5.1461 21 6 0.9374 -1.8278 -4.0489 22 17 -0.5749 -2.0081 -3.2157 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7081 1.1610 3.4844 27 1 3.8030 -1.3532 -0.3065 28 1 3.8210 -1.3109 -2.0861 29 1 3.9187 0.2052 -1.1590 30 1 0.4723 0.1324 -2.3564 31 1 2.0520 0.9346 -2.5280 32 1 4.2881 -1.4333 -5.8965 33 1 2.6471 -3.0997 -6.6655 34 1 0.5029 -3.3534 -5.4838 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057846687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:59 Heat of formation + Delta-G solvation = -34.784344 kcal Electronic energy + Delta-G solvation = -18981.922802 eV Core-core repulsion = 15854.670473 eV Total energy + Delta-G solvation = -3127.252328 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.00717 -40.39102 -38.52239 -37.33047 -35.00922 -32.77090 -31.39996 -30.88143 -28.50194 -26.62522 -25.17955 -23.73483 -22.70964 -21.18312 -18.77135 -18.36140 -17.80799 -17.28590 -16.86701 -16.61300 -15.84885 -15.70937 -15.40925 -15.21645 -14.55214 -14.30916 -14.12176 -14.00240 -13.65763 -13.01234 -12.94747 -12.72939 -12.65821 -12.58702 -12.28817 -12.25919 -12.13433 -11.98013 -11.88124 -11.50454 -10.92772 -10.53223 -9.82973 -9.67079 -9.00383 -8.11395 -6.23451 0.03790 0.07245 1.17693 1.41913 1.44005 1.51486 2.39828 2.47324 3.16546 3.25235 3.39011 3.64584 3.79838 3.94423 4.27371 4.42448 4.42608 4.54319 4.61812 4.68284 4.87112 4.93423 5.00022 5.03498 5.11950 5.20720 5.21501 5.24826 5.48022 5.70259 5.74903 5.77788 6.22944 6.32907 6.64704 6.89214 7.45191 8.94562 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024674 B = 0.005861 C = 0.005243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.538831 B = 4776.475230 C = 5339.537950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.218 3.782 3 H -0.041 1.041 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.525 5.525 13 C 0.047 3.953 14 C 0.085 3.915 15 C -0.117 4.117 16 C 0.091 3.909 17 F -0.146 7.146 18 C -0.145 4.145 19 C -0.068 4.068 20 C -0.118 4.118 21 C -0.008 4.008 22 Cl -0.061 7.061 23 H 0.033 0.967 24 H 0.026 0.974 25 H 0.059 0.941 26 H 0.262 0.738 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.003 0.997 30 H 0.090 0.910 31 H 0.022 0.978 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 -6.914 -18.459 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.112 3.888 3 H -0.023 1.023 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.250 5.250 13 C -0.102 4.102 14 C -0.042 4.042 15 C -0.119 4.119 16 C 0.071 3.929 17 F -0.124 7.124 18 C -0.163 4.163 19 C -0.086 4.086 20 C -0.137 4.137 21 C -0.036 4.036 22 Cl -0.032 7.032 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.022 0.978 30 H 0.108 0.892 31 H 0.040 0.960 32 H 0.184 0.816 33 H 0.203 0.797 34 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.493 -7.237 -18.197 19.640 hybrid contribution 0.526 1.161 1.476 1.950 sum 2.019 -6.076 -16.721 17.905 Atomic orbital electron populations 1.21591 0.96914 0.99286 0.99343 1.19059 0.92872 0.89956 0.86922 1.02329 1.21358 1.31274 1.12325 0.90798 0.92251 1.25708 0.95331 0.95749 1.01871 1.70016 1.37654 1.24175 1.24133 0.85569 0.78672 0.78701 0.78432 1.19730 1.20871 1.19646 1.62150 1.09868 1.51788 1.01147 1.22170 0.88109 0.98603 1.01286 1.21006 1.01787 0.93215 0.88226 1.19714 0.94293 0.99866 0.98032 1.17715 0.87004 0.91403 0.96815 1.91484 1.66268 1.64691 1.89979 1.21563 1.02954 0.96298 0.95495 1.21413 0.90924 0.96453 0.99807 1.21489 0.99387 0.99204 0.93587 1.20761 0.88754 0.98075 0.95984 1.98389 1.29913 1.96524 1.78338 0.94809 0.95549 0.92196 0.92901 0.91933 0.91988 0.97846 0.89219 0.96005 0.81580 0.79721 0.81790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.76 8.76 71.98 0.63 -5.13 16 2 C 0.22 11.64 2.06 44.17 0.09 11.73 16 3 H -0.04 -2.44 8.14 -2.39 -0.02 -2.46 16 4 C -0.52 -29.40 7.93 25.60 0.20 -29.20 16 5 H 0.06 3.33 6.39 -2.91 -0.02 3.32 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -54.06 11.32 21.44 0.24 -53.82 16 8 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 N -0.53 -23.89 4.61 -906.02 -4.18 -28.07 16 13 C 0.05 2.00 8.24 127.69 1.05 3.06 16 14 C 0.09 3.38 4.38 85.56 0.38 3.76 16 15 C -0.12 -3.77 4.89 -19.80 -0.10 -3.87 16 16 C 0.09 2.57 5.90 22.37 0.13 2.70 16 17 F -0.15 -4.65 15.10 44.97 0.68 -3.98 16 18 C -0.14 -2.76 10.03 22.31 0.22 -2.54 16 19 C -0.07 -1.00 10.04 22.26 0.22 -0.78 16 20 C -0.12 -2.27 9.83 22.30 0.22 -2.05 16 21 C -0.01 -0.23 6.31 22.32 0.14 -0.09 16 22 Cl -0.06 -1.84 27.30 -2.72 -0.07 -1.91 16 23 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.03 1.19 6.20 -2.39 -0.01 1.18 16 25 H 0.06 3.34 6.07 -2.38 -0.01 3.33 16 26 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 27 H 0.06 2.81 6.23 -2.39 -0.01 2.80 16 28 H 0.06 2.34 5.59 -2.39 -0.01 2.33 16 29 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 30 H 0.09 3.59 4.59 -2.39 -0.01 3.58 16 31 H 0.02 0.91 7.61 -2.38 -0.02 0.89 16 32 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 33 H 0.19 1.07 8.06 -2.90 -0.02 1.05 16 34 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -65.18 292.47 3.45 -61.73 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: 1.12 Total: 0.77 kcal Atomic # 6 Polarization: -24.92 SS G_CDS: 3.64 Total: -21.28 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -3.94 Total: -81.89 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.68 Total: -3.98 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.91 kcal Total: -65.18 3.45 -61.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057846687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.946 kcal (2) G-P(sol) polarization free energy of solvation -65.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds