Wall clock time and date at job start Mon Mar 30 2020 01:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47268 * 2 1 4 4 C 1.50704 * 109.47047 * 239.99863 * 2 1 3 5 5 H 1.07995 * 120.00022 * 354.93990 * 4 2 1 6 6 C 1.37876 * 120.00014 * 174.93346 * 4 2 1 7 7 N 1.31509 * 120.00531 * 177.03496 * 6 4 2 8 8 Si 1.86811 * 119.99718 * 357.03114 * 6 4 2 9 9 H 1.48502 * 109.46866 * 85.10568 * 8 6 4 10 10 H 1.48499 * 109.46877 * 205.10611 * 8 6 4 11 11 H 1.48501 * 109.47155 * 325.10588 * 8 6 4 12 12 N 1.46894 * 109.46913 * 120.00271 * 2 1 3 13 13 C 1.46900 * 111.00456 * 58.95494 * 12 2 1 14 14 C 1.46903 * 111.00203 * 294.99752 * 12 2 1 15 15 C 1.50698 * 109.47383 * 190.00177 * 14 12 2 16 16 C 1.38455 * 120.01827 * 269.72475 * 15 14 12 17 17 F 1.35094 * 120.02141 * 0.25443 * 16 15 14 18 18 C 1.38447 * 119.96151 * 180.25824 * 16 15 14 19 19 C 1.38231 * 120.00114 * 0.02562 * 18 16 15 20 20 C 1.38202 * 120.03584 * 0.02562 * 19 18 16 21 21 C 1.38290 * 120.01885 * 90.00231 * 15 14 12 22 22 Cl 1.73600 * 119.99982 * 359.70088 * 21 15 14 23 23 H 1.09002 * 109.47051 * 174.58523 * 1 2 3 24 24 H 1.08990 * 109.47352 * 294.59036 * 1 2 3 25 25 H 1.09004 * 109.46958 * 54.59410 * 1 2 3 26 26 H 0.96999 * 120.00508 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46596 * 296.04384 * 13 12 2 28 28 H 1.08992 * 109.46977 * 56.04398 * 13 12 2 29 29 H 1.09001 * 109.47276 * 176.04640 * 13 12 2 30 30 H 1.08996 * 109.46848 * 70.00001 * 14 12 2 31 31 H 1.09000 * 109.46868 * 310.00583 * 14 12 2 32 32 H 1.07994 * 120.00171 * 180.02562 * 18 16 15 33 33 H 1.07993 * 119.98386 * 179.97438 * 19 18 16 34 34 H 1.08000 * 119.97774 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 1.3340 -1.1917 -1.8990 6 6 3.3835 -0.7459 -1.5028 7 7 3.8272 -1.4150 -2.5444 8 14 4.5841 0.1567 -0.3920 9 1 4.9404 -0.7103 0.7598 10 1 5.8114 0.4913 -1.1581 11 1 3.9547 1.4065 0.1052 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0762 1.2459 14 6 1.6487 0.0391 2.4181 15 6 2.3679 -0.5572 3.6005 16 6 1.7816 -1.5828 4.3226 17 9 0.5668 -2.0530 3.9645 18 6 2.4410 -2.1262 5.4120 19 6 3.6837 -1.6444 5.7785 20 6 4.2684 -0.6200 5.0583 21 6 3.6112 -0.0765 3.9684 22 17 4.3475 1.2089 3.0634 23 1 -0.3633 -1.0231 -0.0970 24 1 -0.3633 0.4276 0.9344 25 1 -0.3633 0.5954 -0.8377 26 1 4.7778 -1.4402 -2.7357 27 1 0.4420 -2.0731 1.3347 28 1 1.8167 -2.5950 0.3318 29 1 1.9617 -2.5869 2.1058 30 1 0.5723 -0.0346 2.5725 31 1 1.9297 1.0869 2.3125 32 1 1.9845 -2.9264 5.9755 33 1 4.1976 -2.0681 6.6285 34 1 5.2396 -0.2446 5.3452 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057846690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:01 Heat of formation + Delta-G solvation = -17.937969 kcal Electronic energy + Delta-G solvation = -19453.885112 eV Core-core repulsion = 16327.363297 eV Total energy + Delta-G solvation = -3126.521815 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.86493 -39.31009 -37.17485 -36.26979 -32.83056 -31.54700 -30.40582 -29.17782 -26.67726 -25.47719 -23.77814 -22.70970 -21.23066 -19.08436 -17.67356 -16.77586 -16.67094 -15.95116 -15.78217 -14.80689 -14.61453 -14.25113 -13.79104 -13.62383 -13.40042 -13.11265 -12.77232 -12.57664 -12.19825 -11.93865 -11.47038 -11.29834 -11.17368 -11.13418 -10.90020 -10.59845 -10.52562 -10.16926 -9.90560 -9.55733 -9.14817 -8.70654 -8.66672 -8.46480 -7.22906 -5.98762 -4.05660 1.01546 1.08648 2.23033 3.42232 3.56629 3.62142 3.74089 4.26635 4.65369 4.66461 4.76682 4.86128 5.02426 5.19239 5.46133 5.52921 5.70055 5.84949 6.00675 6.05442 6.14000 6.17838 6.23960 6.31205 6.37323 6.39153 6.56472 6.72727 6.83841 7.04512 7.25236 7.67512 8.02908 8.23050 8.60980 9.01138 9.65927 11.10222 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.009082 C = 0.007262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.811232 B = 3082.153567 C = 3854.708833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.510 4.510 5 H 0.071 0.929 6 C 0.084 3.916 7 N -0.900 5.900 8 Si 0.908 3.092 9 H -0.264 1.264 10 H -0.315 1.315 11 H -0.269 1.269 12 N -0.524 5.524 13 C 0.038 3.962 14 C 0.078 3.922 15 C -0.090 4.090 16 C 0.115 3.885 17 F -0.130 7.130 18 C -0.154 4.154 19 C -0.089 4.089 20 C -0.125 4.125 21 C 0.005 3.995 22 Cl -0.048 7.048 23 H 0.049 0.951 24 H 0.029 0.971 25 H 0.050 0.950 26 H 0.263 0.737 27 H 0.016 0.984 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.972 1.487 17.676 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.066 3.934 3 H 0.063 0.937 4 C -0.548 4.548 5 H 0.089 0.911 6 C -0.120 4.120 7 N -0.537 5.537 8 Si 0.738 3.262 9 H -0.189 1.189 10 H -0.244 1.244 11 H -0.194 1.194 12 N -0.249 5.249 13 C -0.110 4.110 14 C -0.050 4.050 15 C -0.092 4.092 16 C 0.095 3.905 17 F -0.109 7.109 18 C -0.173 4.173 19 C -0.107 4.107 20 C -0.144 4.144 21 C -0.023 4.023 22 Cl -0.019 7.019 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.310 1.527 17.425 17.494 hybrid contribution -0.274 0.335 0.412 0.597 sum -0.584 1.862 17.836 17.943 Atomic orbital electron populations 1.22294 0.99950 1.00937 0.99157 1.19890 0.89816 0.95418 0.88264 0.93687 1.20846 0.93040 1.35946 1.04999 0.91063 1.25016 0.98629 0.94026 0.94302 1.69956 1.14643 1.41153 1.27920 0.86316 0.78451 0.81144 0.80334 1.18885 1.24370 1.19377 1.62820 1.59364 1.02327 1.00366 1.22178 0.96241 0.90633 1.01937 1.21106 0.96347 0.98793 0.88773 1.19905 0.94776 0.96560 0.97984 1.17332 0.82252 0.95311 0.95613 1.91514 1.40937 1.87071 1.91346 1.21160 0.96573 1.02174 0.97427 1.20842 0.94388 0.95874 0.99630 1.21084 1.00733 0.97665 0.94901 1.20572 0.93376 0.93973 0.94373 1.98398 1.81627 1.48146 1.73753 0.93173 0.95236 0.93074 0.92813 0.96522 0.89732 0.94425 0.93824 0.89764 0.84474 0.84417 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.39 37.16 0.31 -3.04 16 2 C 0.17 4.01 1.70 -68.86 -0.12 3.89 16 3 H 0.05 1.10 6.70 -51.93 -0.35 0.75 16 4 C -0.51 -14.21 7.74 -34.44 -0.27 -14.48 16 5 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 6 C 0.08 2.46 5.47 -17.82 -0.10 2.36 16 7 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 8 Si 0.91 23.53 24.98 -169.99 -4.25 19.29 16 9 H -0.26 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.31 -8.34 7.11 56.52 0.40 -7.94 16 11 H -0.27 -6.66 6.50 56.52 0.37 -6.29 16 12 N -0.52 -11.43 2.95 -237.74 -0.70 -12.13 16 13 C 0.04 0.80 7.68 60.06 0.46 1.26 16 14 C 0.08 1.44 4.01 -4.98 -0.02 1.42 16 15 C -0.09 -1.51 4.88 -104.52 -0.51 -2.02 16 16 C 0.12 1.74 5.94 -39.42 -0.23 1.50 16 17 F -0.13 -2.06 15.11 2.25 0.03 -2.02 16 18 C -0.15 -1.85 10.03 -39.51 -0.40 -2.24 16 19 C -0.09 -0.95 10.04 -39.60 -0.40 -1.35 16 20 C -0.12 -1.57 9.83 -39.54 -0.39 -1.95 16 21 C 0.00 0.07 6.31 -39.51 -0.25 -0.18 16 22 Cl -0.05 -0.83 25.91 -51.86 -1.34 -2.17 16 23 H 0.05 1.03 6.78 -51.93 -0.35 0.68 16 24 H 0.03 0.53 6.50 -51.93 -0.34 0.19 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 27 H 0.02 0.33 6.59 -51.93 -0.34 -0.01 16 28 H 0.08 2.01 6.99 -51.93 -0.36 1.64 16 29 H 0.04 0.74 5.92 -51.93 -0.31 0.43 16 30 H 0.04 0.78 6.31 -51.93 -0.33 0.45 16 31 H 0.08 1.56 6.77 -51.93 -0.35 1.21 16 32 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 286.82 15.07 4.32 4.32 Total: -1.00 -30.68 286.82 -7.07 -37.76 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.01 Total: -3.20 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.90 Total: -14.83 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.07 Total: -39.14 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.03 Total: -2.02 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.25 Total: 19.29 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.34 Total: -2.17 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.68 -7.07 -37.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057846690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.820 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds