Wall clock time and date at job start Mon Mar 30 2020 01:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47268 * 2 1 4 4 C 1.50704 * 109.47047 * 239.99863 * 2 1 3 5 5 H 1.07995 * 120.00022 * 354.93990 * 4 2 1 6 6 C 1.37876 * 120.00014 * 174.93346 * 4 2 1 7 7 N 1.31509 * 120.00531 * 177.03496 * 6 4 2 8 8 Si 1.86811 * 119.99718 * 357.03114 * 6 4 2 9 9 H 1.48502 * 109.46866 * 85.10568 * 8 6 4 10 10 H 1.48499 * 109.46877 * 205.10611 * 8 6 4 11 11 H 1.48501 * 109.47155 * 325.10588 * 8 6 4 12 12 N 1.46894 * 109.46913 * 120.00271 * 2 1 3 13 13 C 1.46900 * 111.00456 * 58.95494 * 12 2 1 14 14 C 1.46903 * 111.00203 * 294.99752 * 12 2 1 15 15 C 1.50698 * 109.47383 * 190.00177 * 14 12 2 16 16 C 1.38455 * 120.01827 * 269.72475 * 15 14 12 17 17 F 1.35094 * 120.02141 * 0.25443 * 16 15 14 18 18 C 1.38447 * 119.96151 * 180.25824 * 16 15 14 19 19 C 1.38231 * 120.00114 * 0.02562 * 18 16 15 20 20 C 1.38202 * 120.03584 * 0.02562 * 19 18 16 21 21 C 1.38290 * 120.01885 * 90.00231 * 15 14 12 22 22 Cl 1.73600 * 119.99982 * 359.70088 * 21 15 14 23 23 H 1.09002 * 109.47051 * 174.58523 * 1 2 3 24 24 H 1.08990 * 109.47352 * 294.59036 * 1 2 3 25 25 H 1.09004 * 109.46958 * 54.59410 * 1 2 3 26 26 H 0.96999 * 120.00508 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46596 * 296.04384 * 13 12 2 28 28 H 1.08992 * 109.46977 * 56.04398 * 13 12 2 29 29 H 1.09001 * 109.47276 * 176.04640 * 13 12 2 30 30 H 1.08996 * 109.46848 * 70.00001 * 14 12 2 31 31 H 1.09000 * 109.46868 * 310.00583 * 14 12 2 32 32 H 1.07994 * 120.00171 * 180.02562 * 18 16 15 33 33 H 1.07993 * 119.98386 * 179.97438 * 19 18 16 34 34 H 1.08000 * 119.97774 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 1.3340 -1.1917 -1.8990 6 6 3.3835 -0.7459 -1.5028 7 7 3.8272 -1.4150 -2.5444 8 14 4.5841 0.1567 -0.3920 9 1 4.9404 -0.7103 0.7598 10 1 5.8114 0.4913 -1.1581 11 1 3.9547 1.4065 0.1052 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0762 1.2459 14 6 1.6487 0.0391 2.4181 15 6 2.3679 -0.5572 3.6005 16 6 1.7816 -1.5828 4.3226 17 9 0.5668 -2.0530 3.9645 18 6 2.4410 -2.1262 5.4120 19 6 3.6837 -1.6444 5.7785 20 6 4.2684 -0.6200 5.0583 21 6 3.6112 -0.0765 3.9684 22 17 4.3475 1.2089 3.0634 23 1 -0.3633 -1.0231 -0.0970 24 1 -0.3633 0.4276 0.9344 25 1 -0.3633 0.5954 -0.8377 26 1 4.7778 -1.4402 -2.7357 27 1 0.4420 -2.0731 1.3347 28 1 1.8167 -2.5950 0.3318 29 1 1.9617 -2.5869 2.1058 30 1 0.5723 -0.0346 2.5725 31 1 1.9297 1.0869 2.3125 32 1 1.9845 -2.9264 5.9755 33 1 4.1976 -2.0681 6.6285 34 1 5.2396 -0.2446 5.3452 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057846690.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:00 Heat of formation + Delta-G solvation = -36.592562 kcal Electronic energy + Delta-G solvation = -19454.694036 eV Core-core repulsion = 16327.363297 eV Total energy + Delta-G solvation = -3127.330739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.99568 -40.45424 -38.79171 -37.44634 -34.72324 -33.16611 -31.43055 -30.80459 -28.18352 -27.44054 -25.31876 -23.76487 -22.54356 -20.90168 -18.91530 -18.69956 -17.81016 -17.29445 -16.94584 -16.34367 -16.08448 -15.73175 -15.37041 -15.13878 -14.80957 -14.50608 -14.29930 -14.16763 -13.72265 -13.21703 -13.07442 -12.84567 -12.72708 -12.43777 -12.36550 -12.26300 -12.17724 -11.86439 -11.69022 -11.59335 -11.12214 -10.72322 -9.86662 -9.70881 -8.92388 -8.24628 -6.34010 -0.00162 0.04904 1.07904 1.44477 1.54413 1.63838 2.40992 2.49961 3.02172 3.23460 3.52495 3.63488 3.78595 3.92146 4.24280 4.38874 4.42136 4.44449 4.55268 4.63865 4.68263 4.70977 4.82849 4.91078 5.05978 5.11392 5.17413 5.21644 5.29748 5.42356 5.63206 5.75018 6.07169 6.41442 6.56361 6.79896 7.40564 8.87441 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.019176 B = 0.009082 C = 0.007262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.811232 B = 3082.153567 C = 3854.708833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.174 3.826 3 H 0.040 0.960 4 C -0.505 4.505 5 H 0.035 0.965 6 C 0.034 3.966 7 N -0.946 5.946 8 Si 0.964 3.036 9 H -0.261 1.261 10 H -0.323 1.323 11 H -0.254 1.254 12 N -0.537 5.537 13 C 0.052 3.948 14 C 0.084 3.916 15 C -0.118 4.118 16 C 0.097 3.903 17 F -0.140 7.140 18 C -0.145 4.145 19 C -0.069 4.069 20 C -0.122 4.122 21 C -0.015 4.015 22 Cl -0.071 7.071 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.262 0.738 27 H 0.026 0.974 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.168 0.832 33 H 0.184 0.816 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 1.422 21.345 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.068 3.932 3 H 0.058 0.942 4 C -0.543 4.543 5 H 0.053 0.947 6 C -0.165 4.165 7 N -0.586 5.586 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.253 1.253 11 H -0.178 1.178 12 N -0.262 5.262 13 C -0.096 4.096 14 C -0.044 4.044 15 C -0.121 4.121 16 C 0.077 3.923 17 F -0.118 7.118 18 C -0.163 4.163 19 C -0.087 4.087 20 C -0.141 4.141 21 C -0.042 4.042 22 Cl -0.042 7.042 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.186 0.814 33 H 0.201 0.799 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.010 1.470 21.117 21.168 hybrid contribution -0.437 0.288 -0.617 0.810 sum -0.448 1.758 20.500 20.580 Atomic orbital electron populations 1.22169 0.97697 1.00910 1.00724 1.19693 0.91680 0.94376 0.87433 0.94191 1.21062 0.92285 1.34808 1.06164 0.94719 1.25728 1.00396 0.94940 0.95458 1.70076 1.14895 1.43570 1.30099 0.85427 0.76168 0.80711 0.78450 1.18565 1.25294 1.17782 1.62465 1.59888 1.02648 1.01207 1.21999 0.96854 0.90162 1.00602 1.21010 0.97030 0.98323 0.87995 1.19784 0.95698 0.98293 0.98276 1.17601 0.82329 0.95550 0.96802 1.91487 1.41567 1.87164 1.91623 1.21587 0.96662 1.02054 0.96014 1.21395 0.93524 0.94084 0.99733 1.21477 1.01489 0.97502 0.93596 1.20798 0.93547 0.94230 0.95619 1.98382 1.81887 1.49299 1.74634 0.93762 0.92579 0.92808 0.92910 0.95520 0.93274 0.93015 0.93273 0.90053 0.81441 0.79850 0.82173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.25 8.39 71.98 0.60 -5.65 16 2 C 0.17 8.15 1.70 44.17 0.07 8.22 16 3 H 0.04 1.93 6.70 -2.39 -0.02 1.91 16 4 C -0.50 -28.92 7.74 25.60 0.20 -28.72 16 5 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 6 C 0.03 2.02 5.47 84.66 0.46 2.48 16 7 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 8 Si 0.96 49.39 24.98 68.60 1.71 51.10 16 9 H -0.26 -13.11 7.11 99.48 0.71 -12.40 16 10 H -0.32 -16.88 7.11 99.48 0.71 -16.17 16 11 H -0.25 -12.18 6.50 99.48 0.65 -11.54 16 12 N -0.54 -23.06 2.95 -906.06 -2.67 -25.73 16 13 C 0.05 2.17 7.68 127.69 0.98 3.15 16 14 C 0.08 2.99 4.01 85.56 0.34 3.33 16 15 C -0.12 -3.72 4.88 -19.80 -0.10 -3.82 16 16 C 0.10 2.65 5.94 22.37 0.13 2.79 16 17 F -0.14 -4.11 15.11 44.97 0.68 -3.43 16 18 C -0.14 -2.78 10.03 22.32 0.22 -2.55 16 19 C -0.07 -1.10 10.04 22.26 0.22 -0.88 16 20 C -0.12 -2.55 9.83 22.30 0.22 -2.33 16 21 C -0.01 -0.43 6.31 22.32 0.14 -0.28 16 22 Cl -0.07 -2.31 25.91 -2.72 -0.07 -2.38 16 23 H 0.04 1.80 6.78 -2.39 -0.02 1.78 16 24 H 0.06 1.93 6.50 -2.39 -0.02 1.92 16 25 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 27 H 0.03 1.04 6.59 -2.39 -0.02 1.02 16 28 H 0.05 2.38 6.99 -2.39 -0.02 2.36 16 29 H 0.05 1.99 5.92 -2.39 -0.01 1.98 16 30 H 0.05 1.67 6.31 -2.39 -0.02 1.66 16 31 H 0.08 2.92 6.77 -2.39 -0.02 2.90 16 32 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 33 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -68.62 286.82 4.51 -64.11 By element: Atomic # 1 Polarization: -0.29 SS G_CDS: 1.05 Total: 0.76 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 3.51 Total: -24.26 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -2.37 Total: -85.92 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.68 Total: -3.43 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 1.71 Total: 51.10 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.07 Total: -2.38 kcal Total: -68.62 4.51 -64.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057846690.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.522 kcal (2) G-P(sol) polarization free energy of solvation -68.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds