Wall clock time and date at job start Mon Mar 30 2020 01:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46527 * 2 1 4 4 C 1.50701 * 109.47307 * 239.99740 * 2 1 3 5 5 H 1.08002 * 119.99495 * 335.00006 * 4 2 1 6 6 C 1.37870 * 119.99956 * 154.99957 * 4 2 1 7 7 N 1.31515 * 119.99883 * 185.12971 * 6 4 2 8 8 Si 1.86803 * 119.99969 * 5.12911 * 6 4 2 9 9 H 1.48498 * 109.47019 * 84.82829 * 8 6 4 10 10 H 1.48499 * 109.47148 * 204.82617 * 8 6 4 11 11 H 1.48498 * 109.47253 * 324.82737 * 8 6 4 12 12 N 1.46896 * 109.46904 * 119.99302 * 2 1 3 13 13 C 1.46902 * 110.99869 * 58.95871 * 12 2 1 14 14 C 1.46896 * 111.00191 * 295.00298 * 12 2 1 15 15 C 1.50704 * 109.46834 * 190.00167 * 14 12 2 16 16 C 1.38253 * 119.97870 * 259.72407 * 15 14 12 17 17 C 1.38186 * 120.03666 * 179.72788 * 16 15 14 18 18 C 1.38490 * 119.99759 * 0.54975 * 17 16 15 19 19 F 1.35102 * 120.01744 * 179.75148 * 18 17 16 20 20 C 1.38417 * 119.96605 * 359.72484 * 18 17 16 21 21 C 1.38338 * 119.96002 * 0.02562 * 20 18 17 22 22 Cl 1.73602 * 120.00219 * 179.97438 * 21 20 18 23 23 H 1.09001 * 109.46993 * 54.94468 * 1 2 3 24 24 H 1.08997 * 109.46888 * 174.94274 * 1 2 3 25 25 H 1.09001 * 109.47532 * 294.94489 * 1 2 3 26 26 H 0.97008 * 119.99920 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.46944 * 296.04166 * 13 12 2 28 28 H 1.08999 * 109.47189 * 56.04052 * 13 12 2 29 29 H 1.08998 * 109.46956 * 176.04057 * 13 12 2 30 30 H 1.08997 * 109.47390 * 309.99778 * 14 12 2 31 31 H 1.09000 * 109.47351 * 70.00056 * 14 12 2 32 32 H 1.07997 * 119.98099 * 0.02562 * 16 15 14 33 33 H 1.07997 * 119.99771 * 180.27678 * 17 16 15 34 34 H 1.07995 * 120.01771 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 1.4132 -1.4487 -1.7183 6 6 3.2825 -0.4181 -1.7332 7 7 3.6809 -0.9623 -2.8622 8 14 4.4101 0.7511 -0.8107 9 1 5.1569 0.0003 0.2304 10 1 5.3704 1.3663 -1.7619 11 1 3.5996 1.8162 -0.1674 12 7 2.0197 -0.6923 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6486 0.0394 2.4180 15 6 2.3679 -0.5568 3.6006 16 6 1.7057 -1.4299 4.4436 17 6 2.3656 -1.9817 5.5250 18 6 3.6878 -1.6513 5.7714 19 9 4.3320 -2.1867 6.8314 20 6 4.3492 -0.7728 4.9306 21 6 3.6885 -0.2254 3.8455 22 17 4.5167 0.8770 2.7908 23 1 -0.3633 0.5903 -0.8413 24 1 -0.3633 -1.0237 -0.0906 25 1 -0.3634 0.4334 0.9318 26 1 4.5606 -0.7568 -3.2157 27 1 0.4420 -2.0730 1.3349 28 1 1.8167 -2.5949 0.3320 29 1 1.9618 -2.5866 2.1060 30 1 1.9297 1.0872 2.3124 31 1 0.5722 -0.0343 2.5725 32 1 0.6734 -1.6845 4.2540 33 1 1.8491 -2.6670 6.1805 34 1 5.3803 -0.5150 5.1217 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:05 Heat of formation + Delta-G solvation = -21.315437 kcal Electronic energy + Delta-G solvation = -18971.330688 eV Core-core repulsion = 15844.662415 eV Total energy + Delta-G solvation = -3126.668273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.97451 -39.44636 -37.06296 -36.19852 -32.75719 -31.40273 -30.92664 -29.07029 -26.54592 -25.50121 -23.59514 -23.06148 -21.22492 -19.09776 -17.80778 -16.90341 -16.65806 -15.76659 -15.63904 -15.01742 -14.57409 -14.19480 -14.06351 -13.79409 -13.41315 -13.12427 -12.81703 -12.67682 -12.40891 -11.57879 -11.50717 -11.41802 -11.25771 -11.12909 -10.90706 -10.70910 -10.63476 -10.20731 -9.83006 -9.60684 -9.06964 -8.92672 -8.65300 -8.38607 -7.24849 -6.05674 -4.09905 1.02231 1.06918 2.28207 3.41538 3.45149 3.51069 3.59315 4.20016 4.54913 4.64237 4.78866 4.84014 4.98573 5.18867 5.47463 5.52637 5.74185 5.83369 5.89986 6.05598 6.08056 6.14203 6.24547 6.27207 6.34092 6.42805 6.53427 6.70973 6.81166 6.99097 7.16090 7.64233 8.04203 8.23356 8.57365 8.96480 9.59285 11.04916 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.007119 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.102345 B = 3931.952712 C = 4568.289687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.167 3.833 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.071 0.929 6 C 0.084 3.916 7 N -0.897 5.897 8 Si 0.886 3.114 9 H -0.256 1.256 10 H -0.306 1.306 11 H -0.267 1.267 12 N -0.524 5.524 13 C 0.037 3.963 14 C 0.078 3.922 15 C -0.064 4.064 16 C -0.077 4.077 17 C -0.152 4.152 18 C 0.099 3.901 19 F -0.139 7.139 20 C -0.151 4.151 21 C 0.008 3.992 22 Cl -0.042 7.042 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.027 0.973 26 H 0.263 0.737 27 H 0.011 0.989 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.320 0.983 16.460 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.062 3.938 3 H 0.070 0.930 4 C -0.539 4.539 5 H 0.089 0.911 6 C -0.120 4.120 7 N -0.535 5.535 8 Si 0.714 3.286 9 H -0.180 1.180 10 H -0.233 1.233 11 H -0.192 1.192 12 N -0.248 5.248 13 C -0.112 4.112 14 C -0.050 4.050 15 C -0.065 4.065 16 C -0.096 4.096 17 C -0.171 4.171 18 C 0.079 3.921 19 F -0.118 7.118 20 C -0.170 4.170 21 C -0.019 4.019 22 Cl -0.013 7.013 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.566 1.044 16.224 16.333 hybrid contribution 0.071 0.468 0.578 0.747 sum -1.495 1.512 16.802 16.936 Atomic orbital electron populations 1.22330 1.00218 1.00765 0.99118 1.19988 0.89827 0.95736 0.88240 0.93049 1.20809 1.01841 1.24156 1.07088 0.91121 1.25018 0.97629 0.95445 0.93859 1.69935 1.19922 1.44301 1.19313 0.86708 0.80550 0.81612 0.79690 1.18047 1.23340 1.19235 1.63017 1.59518 1.02025 1.00269 1.22159 0.95845 0.91069 1.02086 1.21168 0.96015 0.98624 0.89145 1.20019 0.92599 0.97033 0.96880 1.20890 1.00273 0.95303 0.93092 1.21133 0.93218 1.02709 1.00027 1.17400 0.91248 0.96928 0.86513 1.91495 1.81694 1.84605 1.54001 1.20939 1.01391 0.99410 0.95271 1.20542 0.92766 0.96108 0.92489 1.98420 1.77728 1.60803 1.64308 0.93022 0.93385 0.95363 0.92697 0.97030 0.90006 0.93980 0.90230 0.94215 0.84428 0.84512 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 8.43 37.16 0.31 -2.88 16 2 C 0.17 3.73 1.71 -68.86 -0.12 3.61 16 3 H 0.05 1.21 5.62 -51.93 -0.29 0.92 16 4 C -0.50 -13.49 7.65 -34.44 -0.26 -13.75 16 5 H 0.07 2.07 8.05 -52.49 -0.42 1.65 16 6 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 7 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 8 Si 0.89 22.19 25.97 -169.99 -4.42 17.78 16 9 H -0.26 -6.29 6.55 56.52 0.37 -5.92 16 10 H -0.31 -7.82 7.11 56.52 0.40 -7.42 16 11 H -0.27 -6.40 6.14 56.52 0.35 -6.05 16 12 N -0.52 -10.56 4.28 -237.73 -1.02 -11.58 16 13 C 0.04 0.69 8.53 60.07 0.51 1.20 16 14 C 0.08 1.31 3.95 -4.98 -0.02 1.29 16 15 C -0.06 -0.96 4.57 -104.58 -0.48 -1.44 16 16 C -0.08 -0.95 8.75 -39.59 -0.35 -1.30 16 17 C -0.15 -1.77 10.03 -39.51 -0.40 -2.16 16 18 C 0.10 1.28 7.30 -39.42 -0.29 0.99 16 19 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 20 C -0.15 -2.07 9.81 -39.48 -0.39 -2.46 16 21 C 0.01 0.13 6.31 -39.51 -0.25 -0.12 16 22 Cl -0.04 -0.73 25.61 -51.86 -1.33 -2.06 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.05 0.92 6.76 -51.93 -0.35 0.57 16 25 H 0.03 0.47 6.52 -51.93 -0.34 0.13 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.01 0.20 6.62 -51.93 -0.34 -0.15 16 28 H 0.08 1.77 6.99 -51.93 -0.36 1.41 16 29 H 0.04 0.72 6.66 -51.93 -0.35 0.38 16 30 H 0.08 1.37 7.21 -51.93 -0.37 1.00 16 31 H 0.04 0.60 6.68 -51.93 -0.35 0.26 16 32 H 0.14 1.43 8.03 -52.49 -0.42 1.01 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 291.11 15.07 4.39 4.39 Total: -1.00 -29.15 291.11 -7.47 -36.62 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -4.09 Total: -2.30 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -1.82 Total: -14.71 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: -0.24 Total: -37.96 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.42 Total: 17.78 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.33 Total: -2.06 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.15 -7.47 -36.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.303 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds