Wall clock time and date at job start Mon Mar 30 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46527 * 2 1 4 4 C 1.50701 * 109.47307 * 239.99740 * 2 1 3 5 5 H 1.08002 * 119.99495 * 335.00006 * 4 2 1 6 6 C 1.37870 * 119.99956 * 154.99957 * 4 2 1 7 7 N 1.31515 * 119.99883 * 185.12971 * 6 4 2 8 8 Si 1.86803 * 119.99969 * 5.12911 * 6 4 2 9 9 H 1.48498 * 109.47019 * 84.82829 * 8 6 4 10 10 H 1.48499 * 109.47148 * 204.82617 * 8 6 4 11 11 H 1.48498 * 109.47253 * 324.82737 * 8 6 4 12 12 N 1.46896 * 109.46904 * 119.99302 * 2 1 3 13 13 C 1.46902 * 110.99869 * 58.95871 * 12 2 1 14 14 C 1.46896 * 111.00191 * 295.00298 * 12 2 1 15 15 C 1.50704 * 109.46834 * 190.00167 * 14 12 2 16 16 C 1.38253 * 119.97870 * 259.72407 * 15 14 12 17 17 C 1.38186 * 120.03666 * 179.72788 * 16 15 14 18 18 C 1.38490 * 119.99759 * 0.54975 * 17 16 15 19 19 F 1.35102 * 120.01744 * 179.75148 * 18 17 16 20 20 C 1.38417 * 119.96605 * 359.72484 * 18 17 16 21 21 C 1.38338 * 119.96002 * 0.02562 * 20 18 17 22 22 Cl 1.73602 * 120.00219 * 179.97438 * 21 20 18 23 23 H 1.09001 * 109.46993 * 54.94468 * 1 2 3 24 24 H 1.08997 * 109.46888 * 174.94274 * 1 2 3 25 25 H 1.09001 * 109.47532 * 294.94489 * 1 2 3 26 26 H 0.97008 * 119.99920 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.46944 * 296.04166 * 13 12 2 28 28 H 1.08999 * 109.47189 * 56.04052 * 13 12 2 29 29 H 1.08998 * 109.46956 * 176.04057 * 13 12 2 30 30 H 1.08997 * 109.47390 * 309.99778 * 14 12 2 31 31 H 1.09000 * 109.47351 * 70.00056 * 14 12 2 32 32 H 1.07997 * 119.98099 * 0.02562 * 16 15 14 33 33 H 1.07997 * 119.99771 * 180.27678 * 17 16 15 34 34 H 1.07995 * 120.01771 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 1.4132 -1.4487 -1.7183 6 6 3.2825 -0.4181 -1.7332 7 7 3.6809 -0.9623 -2.8622 8 14 4.4101 0.7511 -0.8107 9 1 5.1569 0.0003 0.2304 10 1 5.3704 1.3663 -1.7619 11 1 3.5996 1.8162 -0.1674 12 7 2.0197 -0.6923 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6486 0.0394 2.4180 15 6 2.3679 -0.5568 3.6006 16 6 1.7057 -1.4299 4.4436 17 6 2.3656 -1.9817 5.5250 18 6 3.6878 -1.6513 5.7714 19 9 4.3320 -2.1867 6.8314 20 6 4.3492 -0.7728 4.9306 21 6 3.6885 -0.2254 3.8455 22 17 4.5167 0.8770 2.7908 23 1 -0.3633 0.5903 -0.8413 24 1 -0.3633 -1.0237 -0.0906 25 1 -0.3634 0.4334 0.9318 26 1 4.5606 -0.7568 -3.2157 27 1 0.4420 -2.0730 1.3349 28 1 1.8167 -2.5949 0.3320 29 1 1.9618 -2.5866 2.1060 30 1 1.9297 1.0872 2.3124 31 1 0.5722 -0.0343 2.5725 32 1 0.6734 -1.6845 4.2540 33 1 1.8491 -2.6670 6.1805 34 1 5.3803 -0.5150 5.1217 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095661.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:04 Heat of formation + Delta-G solvation = -38.984090 kcal Electronic energy + Delta-G solvation = -18972.096858 eV Core-core repulsion = 15844.662415 eV Total energy + Delta-G solvation = -3127.434443 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.97046 -40.57650 -38.58322 -37.40029 -34.66197 -32.90744 -31.94884 -30.59248 -27.93661 -27.35221 -25.05722 -24.08636 -22.46946 -20.79606 -18.95676 -18.80867 -17.71918 -17.03418 -16.71000 -16.42002 -16.12194 -15.71854 -15.37411 -14.90602 -14.81250 -14.57586 -14.37431 -14.07595 -13.98656 -13.23344 -12.84401 -12.81493 -12.69999 -12.53337 -12.25603 -12.17650 -12.12234 -11.79174 -11.63887 -11.49668 -10.97545 -10.71048 -9.98929 -9.59257 -8.76783 -8.24283 -6.29815 -0.02527 0.06054 1.10561 1.40760 1.50040 1.57808 2.38221 2.45815 3.04227 3.20023 3.62152 3.74305 3.79218 3.95759 4.16590 4.41791 4.49454 4.50963 4.62276 4.74265 4.78169 4.84291 4.90294 4.91760 5.00220 5.09664 5.20367 5.35766 5.41541 5.47688 5.69542 5.72471 6.17570 6.55562 6.68574 6.86724 7.42103 8.89896 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.022702 B = 0.007119 C = 0.006128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.102345 B = 3931.952712 C = 4568.289687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.171 3.829 3 H 0.042 0.958 4 C -0.491 4.491 5 H 0.034 0.966 6 C 0.030 3.970 7 N -0.948 5.948 8 Si 0.939 3.061 9 H -0.251 1.251 10 H -0.316 1.316 11 H -0.250 1.250 12 N -0.542 5.542 13 C 0.046 3.954 14 C 0.083 3.917 15 C -0.080 4.080 16 C -0.067 4.067 17 C -0.138 4.138 18 C 0.097 3.903 19 F -0.139 7.139 20 C -0.156 4.156 21 C -0.007 4.007 22 Cl -0.069 7.069 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.261 0.739 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.664 0.919 19.610 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.065 3.935 3 H 0.060 0.940 4 C -0.530 4.530 5 H 0.052 0.948 6 C -0.169 4.169 7 N -0.589 5.589 8 Si 0.766 3.234 9 H -0.175 1.175 10 H -0.244 1.244 11 H -0.175 1.175 12 N -0.266 5.266 13 C -0.102 4.102 14 C -0.044 4.044 15 C -0.081 4.081 16 C -0.086 4.086 17 C -0.157 4.157 18 C 0.077 3.923 19 F -0.117 7.117 20 C -0.175 4.175 21 C -0.035 4.035 22 Cl -0.040 7.040 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.183 0.817 33 H 0.187 0.813 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.927 0.981 19.409 19.653 hybrid contribution 0.401 0.398 -0.274 0.628 sum -2.526 1.379 19.135 19.350 Atomic orbital electron populations 1.22207 0.97738 1.00984 1.00755 1.19759 0.91753 0.94461 0.87492 0.94032 1.21064 1.00802 1.22569 1.08534 0.94771 1.25732 0.99310 0.97293 0.94534 1.70069 1.20460 1.46960 1.21396 0.85860 0.78841 0.80325 0.78331 1.17537 1.24425 1.17465 1.62583 1.60396 1.02669 1.00965 1.22048 0.97175 0.90073 1.00936 1.21118 0.97585 0.97806 0.87911 1.19984 0.92502 0.98411 0.97223 1.21162 1.01336 0.93810 0.92292 1.21478 0.92455 1.02045 0.99709 1.17544 0.91857 0.96605 0.86270 1.91504 1.81831 1.84501 1.53898 1.21032 1.01949 0.99538 0.95021 1.20649 0.93194 0.96671 0.92962 1.98403 1.78332 1.61850 1.65386 0.93471 0.93492 0.92020 0.92984 0.94955 0.93832 0.92043 0.91001 0.91807 0.81659 0.81275 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.74 8.43 71.98 0.61 -5.13 16 2 C 0.17 7.48 1.71 44.17 0.08 7.55 16 3 H 0.04 1.91 5.62 -2.39 -0.01 1.89 16 4 C -0.49 -26.98 7.65 25.60 0.20 -26.78 16 5 H 0.03 2.08 8.05 -2.91 -0.02 2.06 16 6 C 0.03 1.74 5.47 84.65 0.46 2.20 16 7 N -0.95 -59.60 13.96 21.44 0.30 -59.30 16 8 Si 0.94 46.67 25.97 68.60 1.78 48.45 16 9 H -0.25 -12.14 6.55 99.48 0.65 -11.49 16 10 H -0.32 -16.07 7.11 99.48 0.71 -15.36 16 11 H -0.25 -11.59 6.14 99.48 0.61 -10.98 16 12 N -0.54 -20.78 4.28 -906.05 -3.88 -24.66 16 13 C 0.05 1.63 8.53 127.69 1.09 2.72 16 14 C 0.08 2.51 3.95 85.56 0.34 2.85 16 15 C -0.08 -2.14 4.57 -19.83 -0.09 -2.23 16 16 C -0.07 -1.35 8.75 22.26 0.19 -1.16 16 17 C -0.14 -2.55 10.03 22.32 0.22 -2.32 16 18 C 0.10 2.17 7.30 22.37 0.16 2.34 16 19 F -0.14 -3.13 17.27 44.97 0.78 -2.36 16 20 C -0.16 -3.93 9.81 22.34 0.22 -3.71 16 21 C -0.01 -0.22 6.31 22.32 0.14 -0.08 16 22 Cl -0.07 -2.31 25.61 -2.72 -0.07 -2.38 16 23 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 1.70 6.76 -2.39 -0.02 1.68 16 25 H 0.06 1.83 6.52 -2.39 -0.02 1.81 16 26 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 27 H 0.03 1.00 6.62 -2.39 -0.02 0.99 16 28 H 0.04 1.87 6.99 -2.39 -0.02 1.86 16 29 H 0.06 1.93 6.66 -2.39 -0.02 1.91 16 30 H 0.07 2.29 7.21 -2.39 -0.02 2.28 16 31 H 0.06 1.62 6.68 -2.39 -0.02 1.61 16 32 H 0.17 2.42 8.03 -2.91 -0.02 2.40 16 33 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 34 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -64.84 291.11 3.49 -61.35 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 0.96 Total: 2.66 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 3.62 Total: -23.77 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -3.58 Total: -83.96 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.78 Total: 48.45 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.07 Total: -2.38 kcal Total: -64.84 3.49 -61.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095661.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.367 kcal (2) G-P(sol) polarization free energy of solvation -64.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds