Wall clock time and date at job start Mon Mar 30 2020 00:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34954 * 126.03410 * 2 1 4 4 C 1.35316 * 107.74093 * 180.02562 * 3 2 1 5 5 S 1.76205 * 126.03612 * 180.02562 * 4 3 2 6 6 O 1.42094 * 106.39993 * 336.45558 * 5 4 3 7 7 O 1.42100 * 106.39908 * 203.53696 * 5 4 3 8 8 N 1.65599 * 107.21910 * 89.99938 * 5 4 3 9 9 C 1.36940 * 120.00037 * 89.99983 * 8 5 4 10 10 H 1.08001 * 119.99505 * 231.30905 * 9 8 5 11 11 C 1.38807 * 119.99955 * 51.31052 * 9 8 5 12 12 N 1.31621 * 120.00554 * 23.84043 * 11 9 8 13 13 Si 1.86804 * 119.99908 * 203.84354 * 11 9 8 14 14 H 1.48496 * 109.46913 * 269.99813 * 13 11 9 15 15 H 1.48504 * 109.47010 * 30.00014 * 13 11 9 16 16 H 1.48494 * 109.47227 * 149.99793 * 13 11 9 17 17 C 1.46494 * 119.99960 * 269.99855 * 8 5 4 18 18 C 1.53004 * 117.50070 * 183.44541 * 17 8 5 19 19 C 1.52995 * 117.50069 * 114.78429 * 17 8 5 20 20 C 1.39868 * 107.92254 * 0.26144 * 4 3 2 21 21 N 1.30833 * 108.20321 * 359.55818 * 20 4 3 22 22 H 1.08996 * 109.47218 * 89.99570 * 1 2 3 23 23 H 1.09004 * 109.47331 * 209.99929 * 1 2 3 24 24 H 1.09007 * 109.47105 * 329.99343 * 1 2 3 25 25 H 1.08000 * 126.12857 * 0.04858 * 3 2 1 26 26 H 0.96995 * 120.00206 * 174.95156 * 12 11 9 27 27 H 1.09003 * 115.55265 * 329.11494 * 17 8 5 28 28 H 1.08997 * 117.49630 * 359.97438 * 18 17 8 29 29 H 1.09000 * 117.49652 * 145.02158 * 18 17 8 30 30 H 1.09003 * 117.50087 * 214.97992 * 19 17 8 31 31 H 1.09002 * 117.49889 * 359.97438 * 19 17 8 32 32 H 1.08003 * 125.89748 * 179.73018 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 16 4.9751 1.6941 -0.0002 6 8 4.5722 2.9436 -0.5438 7 8 6.0297 0.9131 -0.5453 8 7 5.3737 1.9789 1.5817 9 6 6.2300 1.1332 2.2350 10 1 5.9526 0.7176 3.1924 11 6 7.4545 0.8103 1.6666 12 7 8.0069 1.6206 0.7887 13 14 8.3186 -0.7746 2.1475 14 1 9.2060 -0.5212 3.3109 15 1 7.3069 -1.7994 2.5104 16 1 9.1295 -1.2631 1.0035 17 6 4.8102 3.1355 2.2822 18 6 5.2791 3.3903 3.7162 19 6 3.8669 2.8605 3.4550 20 6 3.5346 -0.7320 -0.0070 21 7 2.2892 -1.1327 -0.0006 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5140 25 1 1.9281 2.1194 0.0007 26 1 8.8948 1.4325 0.4466 27 1 4.5991 4.0051 1.6598 28 1 6.0065 2.6970 4.1385 29 1 5.3760 4.4274 4.0372 30 1 3.0354 3.5493 3.6043 31 1 3.6652 1.8189 3.7050 32 1 4.4054 -1.3709 -0.0131 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063518837.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:03 Heat of formation + Delta-G solvation = 47.632653 kcal Electronic energy + Delta-G solvation = -19599.198344 eV Core-core repulsion = 16497.483553 eV Total energy + Delta-G solvation = -3101.714791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.66461 -37.07179 -35.54352 -34.05733 -33.19384 -32.99667 -30.51650 -29.81343 -26.62641 -24.82360 -21.58903 -21.21463 -20.74837 -20.43753 -18.73066 -17.61410 -16.29649 -15.89885 -15.29335 -14.97945 -14.76494 -14.24181 -13.99302 -13.89483 -13.35565 -12.78637 -12.61897 -12.37232 -12.23490 -11.59452 -11.34577 -11.04062 -10.92065 -10.80416 -10.57324 -10.33245 -10.28792 -10.23994 -9.89734 -9.63630 -9.29950 -9.11852 -8.61692 -8.51413 -7.43104 -6.40702 -4.07545 1.98648 2.17029 2.80243 2.99461 3.25768 3.34682 3.37624 4.20463 4.64080 4.71226 4.79551 5.03270 5.06805 5.11154 5.32613 5.39248 5.56084 5.76420 5.78441 5.86866 5.91272 6.06493 6.30714 6.44483 6.59939 6.79019 6.96161 7.02852 7.23285 7.51098 7.62164 7.92414 8.32416 9.02244 9.44595 10.65921 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.009095 C = 0.007830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.416399 B = 3077.954163 C = 3575.245532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.381 5.381 3 C 0.149 3.851 4 C -0.789 4.789 5 S 2.618 3.382 6 O -1.018 7.018 7 O -0.945 6.945 8 N -0.793 5.793 9 C -0.299 4.299 10 H 0.077 0.923 11 C 0.068 3.932 12 N -0.790 5.790 13 Si 0.918 3.082 14 H -0.278 1.278 15 H -0.265 1.265 16 H -0.278 1.278 17 C 0.098 3.902 18 C -0.163 4.163 19 C -0.216 4.216 20 C 0.133 3.867 21 N -0.314 5.314 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.180 0.820 26 H 0.278 0.722 27 H 0.115 0.885 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.040 -0.194 2.710 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.161 5.161 3 C -0.001 4.001 4 C -0.879 4.879 5 S 2.715 3.285 6 O -1.008 7.008 7 O -0.934 6.934 8 N -0.616 5.616 9 C -0.443 4.443 10 H 0.095 0.905 11 C -0.150 4.150 12 N -0.424 5.424 13 Si 0.744 3.256 14 H -0.204 1.204 15 H -0.189 1.189 16 H -0.204 1.204 17 C -0.011 4.011 18 C -0.202 4.202 19 C -0.256 4.256 20 C -0.055 4.055 21 N -0.135 5.135 22 H 0.091 0.909 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.197 0.803 26 H 0.088 0.912 27 H 0.133 0.867 28 H 0.126 0.874 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -10.683 -0.923 1.566 10.837 hybrid contribution 0.269 -0.434 0.410 0.655 sum -10.415 -1.357 1.976 10.687 Atomic orbital electron populations 1.21842 0.74989 1.04341 1.03139 1.48979 1.06500 1.04362 1.56248 1.22352 0.89757 0.93316 0.94706 1.33196 1.18628 1.09529 1.26541 1.07820 0.72371 0.72733 0.75602 1.93293 1.84513 1.43537 1.79466 1.93425 1.51225 1.71337 1.77396 1.52264 1.49902 1.28408 1.31019 1.18755 0.95129 1.24483 1.05925 0.90496 1.25659 0.96203 0.97849 0.95268 1.69817 1.14163 1.33893 1.24516 0.86096 0.79304 0.82369 0.77872 1.20436 1.18924 1.20353 1.21383 0.99876 0.91161 0.88695 1.23035 0.97061 1.00952 0.99107 1.23350 0.93370 1.01537 1.07369 1.23471 0.94898 0.93224 0.93934 1.77263 1.02182 1.07646 1.26381 0.90939 0.89438 0.89529 0.80255 0.91195 0.86712 0.87380 0.89909 0.90044 0.89264 0.79193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 11.47 59.85 0.69 1.71 16 2 N -0.38 -6.30 4.01 -68.16 -0.27 -6.57 16 3 C 0.15 2.67 11.23 -17.22 -0.19 2.48 16 4 C -0.79 -16.79 6.17 -40.01 -0.25 -17.03 16 5 S 2.62 64.82 5.59 -107.50 -0.60 64.22 16 6 O -1.02 -26.41 16.68 -57.17 -0.95 -27.36 16 7 O -0.95 -26.30 14.13 -57.17 -0.81 -27.11 16 8 N -0.79 -19.01 3.02 -53.43 -0.16 -19.18 16 9 C -0.30 -7.43 7.72 -15.06 -0.12 -7.55 16 10 H 0.08 1.82 7.64 -52.49 -0.40 1.42 16 11 C 0.07 1.75 4.04 -17.43 -0.07 1.68 16 12 N -0.79 -21.85 11.75 55.49 0.65 -21.20 16 13 Si 0.92 20.17 29.62 -169.99 -5.03 15.14 16 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 15 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 C 0.10 2.03 6.32 -67.93 -0.43 1.60 16 18 C -0.16 -2.95 9.83 -26.69 -0.26 -3.21 16 19 C -0.22 -3.72 10.36 -26.70 -0.28 -3.99 16 20 C 0.13 2.74 11.81 -17.37 -0.21 2.53 16 21 N -0.31 -6.07 12.58 30.62 0.39 -5.68 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.18 2.67 8.06 -52.49 -0.42 2.24 16 26 H 0.28 7.25 8.32 -40.82 -0.34 6.91 16 27 H 0.12 2.34 7.46 -51.93 -0.39 1.96 16 28 H 0.11 2.09 6.89 -51.93 -0.36 1.74 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.19 3.69 8.06 -52.48 -0.42 3.26 16 LS Contribution 292.92 15.07 4.41 4.41 Total: -1.00 -33.31 292.92 -7.16 -40.47 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -3.66 Total: 4.64 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -1.11 Total: -21.78 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.60 Total: -52.63 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -1.76 Total: -54.47 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Atomic # 16 Polarization: 64.82 SS G_CDS: -0.60 Total: 64.22 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -33.31 -7.16 -40.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063518837.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.106 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds