Wall clock time and date at job start Mon Mar 30 2020 00:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34954 * 126.03410 * 2 1 4 4 C 1.35316 * 107.74093 * 180.02562 * 3 2 1 5 5 S 1.76205 * 126.03612 * 180.02562 * 4 3 2 6 6 O 1.42094 * 106.39993 * 336.45558 * 5 4 3 7 7 O 1.42100 * 106.39908 * 203.53696 * 5 4 3 8 8 N 1.65599 * 107.21910 * 89.99938 * 5 4 3 9 9 C 1.36940 * 120.00037 * 89.99983 * 8 5 4 10 10 H 1.08001 * 119.99505 * 231.30905 * 9 8 5 11 11 C 1.38807 * 119.99955 * 51.31052 * 9 8 5 12 12 N 1.31621 * 120.00554 * 23.84043 * 11 9 8 13 13 Si 1.86804 * 119.99908 * 203.84354 * 11 9 8 14 14 H 1.48496 * 109.46913 * 269.99813 * 13 11 9 15 15 H 1.48504 * 109.47010 * 30.00014 * 13 11 9 16 16 H 1.48494 * 109.47227 * 149.99793 * 13 11 9 17 17 C 1.46494 * 119.99960 * 269.99855 * 8 5 4 18 18 C 1.53004 * 117.50070 * 183.44541 * 17 8 5 19 19 C 1.52995 * 117.50069 * 114.78429 * 17 8 5 20 20 C 1.39868 * 107.92254 * 0.26144 * 4 3 2 21 21 N 1.30833 * 108.20321 * 359.55818 * 20 4 3 22 22 H 1.08996 * 109.47218 * 89.99570 * 1 2 3 23 23 H 1.09004 * 109.47331 * 209.99929 * 1 2 3 24 24 H 1.09007 * 109.47105 * 329.99343 * 1 2 3 25 25 H 1.08000 * 126.12857 * 0.04858 * 3 2 1 26 26 H 0.96995 * 120.00206 * 174.95156 * 12 11 9 27 27 H 1.09003 * 115.55265 * 329.11494 * 17 8 5 28 28 H 1.08997 * 117.49630 * 359.97438 * 18 17 8 29 29 H 1.09000 * 117.49652 * 145.02158 * 18 17 8 30 30 H 1.09003 * 117.50087 * 214.97992 * 19 17 8 31 31 H 1.09002 * 117.49889 * 359.97438 * 19 17 8 32 32 H 1.08003 * 125.89748 * 179.73018 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6666 -0.0006 5 16 4.9751 1.6941 -0.0002 6 8 4.5722 2.9436 -0.5438 7 8 6.0297 0.9131 -0.5453 8 7 5.3737 1.9789 1.5817 9 6 6.2300 1.1332 2.2350 10 1 5.9526 0.7176 3.1924 11 6 7.4545 0.8103 1.6666 12 7 8.0069 1.6206 0.7887 13 14 8.3186 -0.7746 2.1475 14 1 9.2060 -0.5212 3.3109 15 1 7.3069 -1.7994 2.5104 16 1 9.1295 -1.2631 1.0035 17 6 4.8102 3.1355 2.2822 18 6 5.2791 3.3903 3.7162 19 6 3.8669 2.8605 3.4550 20 6 3.5346 -0.7320 -0.0070 21 7 2.2892 -1.1327 -0.0006 22 1 -0.3633 0.0001 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5140 25 1 1.9281 2.1194 0.0007 26 1 8.8948 1.4325 0.4466 27 1 4.5991 4.0051 1.6598 28 1 6.0065 2.6970 4.1385 29 1 5.3760 4.4274 4.0372 30 1 3.0354 3.5493 3.6043 31 1 3.6652 1.8189 3.7050 32 1 4.4054 -1.3709 -0.0131 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063518837.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:02 Heat of formation + Delta-G solvation = 23.445191 kcal Electronic energy + Delta-G solvation = -19600.247191 eV Core-core repulsion = 16497.483553 eV Total energy + Delta-G solvation = -3102.763638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.10256 -38.66499 -37.54564 -36.07078 -34.98478 -34.24716 -32.33286 -31.29927 -27.76791 -26.69723 -23.00668 -22.74789 -22.19724 -22.00522 -20.58300 -19.18434 -18.08793 -17.58772 -16.94296 -16.41964 -16.40240 -15.95321 -15.50018 -15.36455 -15.10788 -14.03532 -13.97768 -13.67044 -13.59339 -13.41759 -13.06336 -12.83990 -12.57102 -12.48812 -12.24668 -12.19841 -12.09460 -12.03469 -11.53261 -11.37065 -10.89244 -10.51801 -10.46200 -10.01111 -9.20463 -8.31063 -6.01854 0.21166 0.68981 1.37779 1.49562 1.56613 1.59617 1.64254 2.40235 2.96317 3.10618 3.28253 3.45853 3.74628 3.78570 4.12321 4.24281 4.28965 4.39013 4.40873 4.46046 4.63581 4.68469 4.81905 4.98019 5.00526 5.32761 5.41164 5.58430 5.59948 5.93413 5.96879 6.39860 6.44942 7.15387 7.57580 8.75885 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018732 B = 0.009095 C = 0.007830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.416399 B = 3077.954163 C = 3575.245532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.367 5.367 3 C 0.162 3.838 4 C -0.820 4.820 5 S 2.635 3.365 6 O -1.038 7.038 7 O -0.987 6.987 8 N -0.807 5.807 9 C -0.305 4.305 10 H 0.085 0.915 11 C 0.025 3.975 12 N -0.839 5.839 13 Si 0.967 3.033 14 H -0.260 1.260 15 H -0.255 1.255 16 H -0.291 1.291 17 C 0.056 3.944 18 C -0.158 4.158 19 C -0.183 4.183 20 C 0.116 3.884 21 N -0.323 5.323 22 H 0.093 0.907 23 H 0.099 0.901 24 H 0.122 0.878 25 H 0.213 0.787 26 H 0.274 0.726 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.847 -0.162 3.996 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.146 5.146 3 C 0.010 3.990 4 C -0.915 4.915 5 S 2.735 3.265 6 O -1.028 7.028 7 O -0.976 6.976 8 N -0.631 5.631 9 C -0.447 4.447 10 H 0.102 0.898 11 C -0.188 4.188 12 N -0.475 5.475 13 Si 0.790 3.210 14 H -0.185 1.185 15 H -0.179 1.179 16 H -0.217 1.217 17 C -0.052 4.052 18 C -0.197 4.197 19 C -0.222 4.222 20 C -0.071 4.071 21 N -0.144 5.144 22 H 0.112 0.888 23 H 0.118 0.882 24 H 0.140 0.860 25 H 0.230 0.770 26 H 0.084 0.916 27 H 0.130 0.870 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.101 0.899 32 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -13.474 -0.881 2.906 13.812 hybrid contribution 0.856 -0.410 -0.024 0.950 sum -12.618 -1.292 2.882 13.007 Atomic orbital electron populations 1.22438 0.71046 1.06798 1.05345 1.49395 1.08519 1.03079 1.53591 1.22756 0.88775 0.94958 0.92549 1.32570 1.18848 1.09470 1.30595 1.06332 0.72512 0.72250 0.75368 1.93255 1.84961 1.44603 1.79980 1.93375 1.53681 1.72103 1.78407 1.52167 1.50814 1.29538 1.30617 1.18944 0.95139 1.24471 1.06191 0.89768 1.26466 0.97066 1.00070 0.95221 1.69909 1.14655 1.35888 1.27069 0.85338 0.78667 0.79328 0.77634 1.18516 1.17873 1.21654 1.21628 1.03214 0.90562 0.89781 1.23098 0.97599 1.02284 0.96736 1.23357 0.93728 1.01975 1.03170 1.23502 0.95628 0.93112 0.94903 1.77199 1.01802 1.09095 1.26297 0.88814 0.88247 0.85950 0.77000 0.91639 0.87021 0.89073 0.87162 0.86387 0.89946 0.79526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.33 11.47 127.77 1.47 2.79 16 2 N -0.37 -10.91 4.01 -369.55 -1.48 -12.39 16 3 C 0.16 5.39 11.23 83.54 0.94 6.33 16 4 C -0.82 -34.33 6.17 21.99 0.14 -34.19 16 5 S 2.64 132.61 5.59 -56.49 -0.32 132.30 16 6 O -1.04 -54.32 16.68 -128.00 -2.13 -56.46 16 7 O -0.99 -57.02 14.13 -128.00 -1.81 -58.83 16 8 N -0.81 -39.03 3.02 -322.95 -0.97 -40.00 16 9 C -0.31 -15.37 7.72 84.03 0.65 -14.72 16 10 H 0.08 4.00 7.64 -2.91 -0.02 3.98 16 11 C 0.02 1.29 4.04 84.86 0.34 1.64 16 12 N -0.84 -48.33 11.75 21.65 0.25 -48.08 16 13 Si 0.97 41.99 29.62 68.60 2.03 44.02 16 14 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 15 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 16 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 17 C 0.06 2.29 6.32 44.99 0.28 2.57 16 18 C -0.16 -5.47 9.83 30.62 0.30 -5.16 16 19 C -0.18 -5.76 10.36 30.62 0.32 -5.44 16 20 C 0.12 4.76 11.81 85.24 1.01 5.77 16 21 N -0.32 -11.90 12.58 -57.02 -0.72 -12.61 16 22 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.21 5.48 8.06 -2.91 -0.02 5.46 16 26 H 0.27 15.05 8.32 -92.71 -0.77 14.28 16 27 H 0.11 4.51 7.46 -2.39 -0.02 4.49 16 28 H 0.09 3.47 6.89 -2.39 -0.02 3.45 16 29 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 30 H 0.12 2.86 8.14 -2.39 -0.02 2.85 16 31 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.19 7.47 8.06 -2.91 -0.02 7.45 16 Total: -1.00 -74.23 292.92 1.42 -72.81 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 1.13 Total: 19.66 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 5.44 Total: -40.42 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -2.92 Total: -113.09 kcal Atomic # 8 Polarization: -111.34 SS G_CDS: -3.94 Total: -115.28 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Atomic # 16 Polarization: 132.61 SS G_CDS: -0.32 Total: 132.30 kcal Total: -74.23 1.42 -72.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063518837.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.257 kcal (2) G-P(sol) polarization free energy of solvation -74.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds