Wall clock time and date at job start Mon Mar 30 2020 01:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30421 * 125.97634 * 2 1 4 4 N 1.39926 * 108.95897 * 180.02562 * 3 2 1 5 5 C 1.46493 * 125.74738 * 180.02562 * 4 3 2 6 6 C 1.34345 * 108.50277 * 0.02562 * 4 3 2 7 7 Cl 1.73597 * 126.31925 * 179.97438 * 6 4 3 8 8 C 1.38275 * 107.36408 * 359.97438 * 6 4 3 9 9 C 1.47303 * 126.43943 * 179.73947 * 8 6 4 10 10 O 1.21619 * 119.99995 * 90.02211 * 9 8 6 11 11 N 1.34773 * 119.99902 * 270.02745 * 9 8 6 12 12 C 1.46491 * 120.00176 * 359.97438 * 11 9 8 13 13 C 1.46501 * 119.99676 * 179.97438 * 11 9 8 14 14 C 1.50705 * 109.47288 * 89.99714 * 13 11 9 15 15 H 1.07993 * 119.99586 * 0.02562 * 14 13 11 16 16 C 1.37877 * 120.00169 * 179.97438 * 14 13 11 17 17 N 1.31517 * 119.99597 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00185 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47007 * 60.00341 * 18 16 14 20 20 H 1.48501 * 109.47007 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47216 * 300.00339 * 18 16 14 22 22 H 1.09004 * 109.47373 * 269.97440 * 1 2 3 23 23 H 1.09001 * 109.47191 * 29.97495 * 1 2 3 24 24 H 1.09001 * 109.47031 * 149.97259 * 1 2 3 25 25 H 1.09005 * 109.47541 * 269.98046 * 5 4 3 26 26 H 1.09006 * 109.47315 * 29.97961 * 5 4 3 27 27 H 1.09004 * 109.47132 * 149.97861 * 5 4 3 28 28 H 1.09002 * 109.47197 * 90.00187 * 12 11 9 29 29 H 1.09001 * 109.47718 * 210.00236 * 12 11 9 30 30 H 1.09006 * 109.47358 * 330.00395 * 12 11 9 31 31 H 1.09001 * 109.46884 * 209.99920 * 13 11 9 32 32 H 1.08998 * 109.47360 * 329.99772 * 13 11 9 33 33 H 0.97010 * 119.99704 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2731 1.0554 0.0000 4 7 3.6111 0.6459 -0.0006 5 6 4.7774 1.5324 -0.0002 6 6 3.6459 -0.6971 -0.0015 7 17 5.0708 -1.6886 -0.0032 8 6 2.3373 -1.1438 -0.0009 9 6 1.8921 -2.5479 -0.0070 10 8 1.7103 -3.1327 1.0438 11 7 1.6865 -3.1846 -1.1769 12 6 1.9052 -2.4801 -2.4426 13 6 1.2443 -4.5813 -1.1829 14 6 -0.2619 -4.6314 -1.1801 15 1 -0.8326 -3.7146 -1.1750 16 6 -0.9112 -5.8477 -1.1853 17 7 -0.2161 -6.9641 -1.1922 18 14 -2.7781 -5.9098 -1.1827 19 1 -3.2980 -5.2205 -2.3909 20 1 -3.2263 -7.3255 -1.1886 21 1 -3.2942 -5.2328 0.0340 22 1 -0.3634 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5143 25 1 5.0667 1.7527 -1.0278 26 1 4.5282 2.4606 0.5140 27 1 5.6052 1.0434 0.5134 28 1 2.9392 -2.6156 -2.7599 29 1 1.2361 -2.8828 -3.2030 30 1 1.7031 -1.4176 -2.3067 31 1 1.6228 -5.0784 -2.0760 32 1 1.6262 -5.0871 -0.2961 33 1 -0.6730 -7.8199 -1.1962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066345813.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:08 Heat of formation + Delta-G solvation = 15.858885 kcal Electronic energy + Delta-G solvation = -18870.714589 eV Core-core repulsion = 15765.578278 eV Total energy + Delta-G solvation = -3105.136312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.60748 -40.19754 -38.14509 -36.55814 -35.19619 -34.61339 -31.73656 -30.56103 -29.61669 -27.54554 -26.81362 -25.07177 -22.90374 -21.51172 -20.21541 -18.64590 -18.45005 -17.58706 -17.05205 -16.79548 -16.39811 -16.09478 -15.44225 -14.65498 -14.49868 -14.35140 -14.08434 -13.78658 -13.68176 -13.56434 -13.43999 -13.27503 -13.12763 -12.86261 -12.78081 -12.77101 -12.50927 -12.15413 -11.90093 -11.69160 -10.86402 -10.59087 -10.34583 -9.73372 -9.44602 -8.17448 -6.31669 0.13931 0.28077 1.16519 1.41515 1.46116 1.48387 1.52916 1.65697 2.35179 2.50229 3.12702 3.23265 3.72786 3.90995 4.22297 4.23536 4.33745 4.38800 4.59768 4.65240 4.67294 4.75550 4.85163 4.89417 5.03902 5.25699 5.28701 5.51924 5.59366 5.85101 6.09796 6.28573 6.68805 6.77128 7.28931 7.44634 8.89921 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027813 B = 0.005621 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.491966 B = 4980.518379 C = 5573.184240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.113 3.887 3 N -0.278 5.278 4 N -0.345 5.345 5 C 0.081 3.919 6 C 0.155 3.845 7 Cl 0.021 6.979 8 C -0.268 4.268 9 C 0.586 3.414 10 O -0.587 6.587 11 N -0.593 5.593 12 C 0.088 3.912 13 C 0.260 3.740 14 C -0.541 4.541 15 H 0.058 0.942 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.967 3.033 19 H -0.259 1.259 20 H -0.281 1.281 21 H -0.276 1.276 22 H 0.088 0.912 23 H 0.107 0.893 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.001 0.999 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.704 18.410 -2.124 20.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.053 4.053 3 N -0.102 5.102 4 N -0.127 5.127 5 C -0.057 4.057 6 C -0.003 4.003 7 Cl 0.049 6.951 8 C -0.285 4.285 9 C 0.373 3.627 10 O -0.467 6.467 11 N -0.323 5.323 12 C -0.054 4.054 13 C 0.139 3.861 14 C -0.579 4.579 15 H 0.076 0.924 16 C -0.190 4.190 17 N -0.569 5.569 18 Si 0.791 3.209 19 H -0.184 1.184 20 H -0.206 1.206 21 H -0.202 1.202 22 H 0.106 0.894 23 H 0.125 0.875 24 H 0.087 0.913 25 H 0.124 0.876 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.019 0.981 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.916 19.191 -1.633 21.663 hybrid contribution -0.491 -1.612 0.171 1.694 sum 9.425 17.579 -1.462 20.000 Atomic orbital electron populations 1.20360 0.84397 1.04497 1.04325 1.22512 0.98012 0.87803 0.96925 1.77182 0.85435 1.20976 1.26582 1.48692 1.07166 1.02280 1.54603 1.22522 0.82564 0.94462 1.06178 1.21836 0.89521 0.84984 1.03992 1.98429 1.34418 1.65601 1.96620 1.19795 0.91876 0.94380 1.22421 1.17517 0.76900 0.84929 0.83366 1.90724 1.54135 1.68610 1.33252 1.48055 1.64207 1.13827 1.06175 1.21758 1.01613 0.97012 0.85059 1.18847 0.94244 0.76982 0.96051 1.21657 0.92265 0.92777 1.51224 0.92413 1.25841 1.03789 0.94948 0.94422 1.70055 1.37705 0.98081 1.51053 0.85475 0.79048 0.77272 0.79082 1.18368 1.20591 1.20156 0.89385 0.87454 0.91291 0.87623 0.86656 0.87622 0.91854 0.90534 0.90769 0.95412 0.98110 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.11 10.28 71.23 0.73 -1.38 16 2 C 0.11 3.55 6.94 43.53 0.30 3.85 16 3 N -0.28 -7.72 12.49 -46.66 -0.58 -8.30 16 4 N -0.35 -8.30 3.98 -357.41 -1.42 -9.73 16 5 C 0.08 1.00 11.28 127.77 1.44 2.44 16 6 C 0.15 4.56 7.53 84.32 0.64 5.20 16 7 Cl 0.02 0.56 28.56 -2.72 -0.08 0.48 16 8 C -0.27 -9.66 4.12 -20.12 -0.08 -9.75 16 9 C 0.59 26.78 7.05 86.63 0.61 27.39 16 10 O -0.59 -32.72 16.69 -4.09 -0.07 -32.79 16 11 N -0.59 -26.63 2.86 -855.19 -2.44 -29.08 16 12 C 0.09 2.97 10.26 127.77 1.31 4.28 16 13 C 0.26 14.25 5.16 85.63 0.44 14.69 16 14 C -0.54 -31.14 9.39 25.60 0.24 -30.90 16 15 H 0.06 3.25 7.81 -2.91 -0.02 3.23 16 16 C 0.01 0.51 5.46 84.65 0.46 0.97 16 17 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 18 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 22 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 23 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.07 2.15 8.00 -2.39 -0.02 2.13 16 25 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.11 1.00 7.78 -2.39 -0.02 0.98 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 30 H 0.07 2.22 6.63 -2.38 -0.02 2.21 16 31 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 32 H 0.00 0.05 7.42 -2.39 -0.02 0.03 16 33 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -75.97 308.99 4.93 -71.04 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: 1.12 Total: 0.91 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 6.09 Total: 16.78 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -4.16 Total: -103.12 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.07 Total: -32.79 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 17 Polarization: 0.56 SS G_CDS: -0.08 Total: 0.48 kcal Total: -75.97 4.93 -71.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066345813.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.899 kcal (2) G-P(sol) polarization free energy of solvation -75.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds