Wall clock time and date at job start Mon Mar 30 2020 01:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09010 * 109.46859 * 2 1 4 4 C 1.50703 * 109.46887 * 119.99419 * 2 1 3 5 5 H 1.08002 * 119.99795 * 94.58739 * 4 2 1 6 6 C 1.37878 * 120.00258 * 274.58743 * 4 2 1 7 7 N 1.31517 * 120.00118 * 6.46757 * 6 4 2 8 8 Si 1.86797 * 120.00151 * 186.47328 * 6 4 2 9 9 H 1.48505 * 109.47171 * 270.00143 * 8 6 4 10 10 H 1.48509 * 109.46964 * 29.99525 * 8 6 4 11 11 H 1.48491 * 109.47353 * 149.99589 * 8 6 4 12 12 N 1.46893 * 109.47385 * 239.99764 * 2 1 3 13 13 C 1.46897 * 111.00207 * 85.00145 * 12 2 1 14 14 H 1.09000 * 109.47296 * 325.00139 * 13 12 2 15 15 C 1.53006 * 109.47359 * 84.99606 * 13 12 2 16 16 C 1.50698 * 109.47517 * 205.00048 * 13 12 2 17 17 C 1.38263 * 119.97207 * 139.99410 * 16 13 12 18 18 C 1.38193 * 120.04991 * 179.97438 * 17 16 13 19 19 C 1.38445 * 119.98535 * 359.97438 * 18 17 16 20 20 F 1.35105 * 120.02812 * 180.02562 * 19 18 17 21 21 C 1.38549 * 119.94111 * 359.97438 * 19 18 17 22 22 Cl 1.73605 * 120.02459 * 179.97438 * 21 19 18 23 23 C 1.38220 * 119.96363 * 319.72218 * 16 13 12 24 24 H 1.08991 * 109.47102 * 294.96965 * 1 2 3 25 25 H 1.09002 * 109.46619 * 54.96953 * 1 2 3 26 26 H 1.09000 * 109.47039 * 174.96568 * 1 2 3 27 27 H 0.97002 * 119.99931 * 355.09205 * 7 6 4 28 28 H 1.00900 * 110.99961 * 208.95269 * 12 2 1 29 29 H 1.08993 * 109.47122 * 300.00461 * 15 13 12 30 30 H 1.09000 * 109.46525 * 60.00589 * 15 13 12 31 31 H 1.08998 * 109.47120 * 180.02562 * 15 13 12 32 32 H 1.08003 * 119.97260 * 359.97438 * 17 16 13 33 33 H 1.07995 * 120.00720 * 179.97438 * 18 17 16 34 34 H 1.07994 * 119.99540 * 0.02562 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.2828 -1.7598 1.1838 6 6 2.1721 -0.0204 2.4161 7 7 1.7488 1.2214 2.5081 8 14 2.9627 -0.8493 3.8916 9 1 1.9163 -1.5280 4.6977 10 1 3.9545 -1.8509 3.4241 11 1 3.6458 0.1716 4.7258 12 7 2.0197 -0.6925 -1.1993 13 6 2.0826 0.2225 -2.3468 14 1 1.2578 0.9329 -2.2907 15 6 3.4112 0.9809 -2.3223 16 6 1.9788 -0.5677 -3.6258 17 6 1.2290 -0.0801 -4.6801 18 6 1.1331 -0.8031 -5.8539 19 6 1.7888 -2.0165 -5.9746 20 9 1.6961 -2.7238 -7.1219 21 6 2.5409 -2.5042 -4.9182 22 17 3.3634 -4.0257 -5.0670 23 6 2.6380 -1.7767 -3.7457 24 1 -0.3633 0.4338 0.9315 25 1 -0.3632 0.5899 -0.8415 26 1 -0.3633 -1.0237 -0.0902 27 1 1.4037 1.6756 1.7235 28 1 2.9174 -1.1205 -1.0286 29 1 3.4863 1.5525 -1.3972 30 1 4.2361 0.2705 -2.3784 31 1 3.4576 1.6602 -3.1735 32 1 0.7177 0.8667 -4.5862 33 1 0.5469 -0.4218 -6.6768 34 1 3.2266 -2.1546 -2.9230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068613092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:11 Heat of formation + Delta-G solvation = -41.608862 kcal Electronic energy + Delta-G solvation = -18319.419795 eV Core-core repulsion = 15191.871533 eV Total energy + Delta-G solvation = -3127.548262 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.97596 -39.50323 -36.90187 -36.28291 -33.57493 -30.98713 -30.97773 -28.95865 -27.18894 -24.86425 -23.62059 -23.02426 -20.93298 -19.88707 -17.90100 -17.22118 -16.52418 -15.88854 -15.77665 -14.75187 -14.56428 -13.91318 -13.84439 -13.76230 -13.44854 -13.12722 -13.04220 -12.62704 -12.41235 -11.79805 -11.51260 -11.30738 -11.24266 -11.16370 -10.92711 -10.85797 -10.71779 -10.58630 -10.17718 -10.14676 -8.99035 -8.67916 -8.54961 -8.33940 -7.50877 -6.45031 -4.16844 0.95492 1.09372 1.98567 3.39798 3.42393 3.43577 3.58273 4.05414 4.44764 4.58244 4.67622 4.96031 5.14849 5.26450 5.33925 5.42078 5.56131 5.60827 5.75474 5.90984 6.00445 6.01776 6.19270 6.32882 6.48449 6.55330 6.68544 6.76827 6.87602 6.99818 7.48752 7.79196 7.99030 8.45221 8.50192 8.79788 9.57055 10.93982 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.026422 B = 0.004505 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.454424 B = 6213.807253 C = 6821.034806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.196 3.804 3 H 0.008 0.992 4 C -0.600 4.600 5 H 0.056 0.944 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 1.071 2.929 9 H -0.288 1.288 10 H -0.288 1.288 11 H -0.285 1.285 12 N -0.678 5.678 13 C 0.117 3.883 14 H 0.084 0.916 15 C -0.174 4.174 16 C -0.049 4.049 17 C -0.088 4.088 18 C -0.143 4.143 19 C 0.092 3.908 20 F -0.134 7.134 21 C -0.072 4.072 22 Cl -0.058 7.058 23 C -0.061 4.061 24 H 0.047 0.953 25 H 0.012 0.988 26 H 0.043 0.957 27 H 0.270 0.730 28 H 0.337 0.663 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 -2.852 -15.521 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 H 0.026 0.974 4 C -0.638 4.638 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.546 5.546 8 Si 0.899 3.101 9 H -0.214 1.214 10 H -0.214 1.214 11 H -0.211 1.211 12 N -0.309 5.309 13 C 0.006 3.994 14 H 0.102 0.898 15 C -0.233 4.233 16 C -0.050 4.050 17 C -0.106 4.106 18 C -0.162 4.162 19 C 0.072 3.928 20 F -0.112 7.112 21 C -0.099 4.099 22 Cl -0.029 7.029 23 C -0.080 4.080 24 H 0.066 0.934 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.156 0.844 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.415 -3.046 -14.121 14.515 hybrid contribution 0.326 0.002 -1.637 1.669 sum 1.741 -3.044 -15.758 16.143 Atomic orbital electron populations 1.21814 0.98653 0.99595 0.98167 1.19286 0.91702 0.93047 0.87115 0.97444 1.22015 1.48117 0.97876 0.95826 0.92590 1.25812 0.95091 0.96179 1.01190 1.70782 1.38853 1.12442 1.32535 0.83513 0.76389 0.75050 0.75125 1.21433 1.21410 1.21085 1.60839 1.32655 1.32052 1.05329 1.20499 0.97331 0.92774 0.88811 0.89776 1.22472 0.97766 1.00822 1.02235 1.20111 0.94852 0.94323 0.95707 1.21011 0.97905 0.99954 0.91760 1.21022 1.01636 0.93581 0.99928 1.17367 1.00806 0.92227 0.82380 1.91507 1.94812 1.77858 1.47061 1.20994 1.01644 0.91078 0.96199 1.98373 1.77301 1.29252 1.98018 1.20829 0.98725 0.93476 0.94952 0.93394 0.96879 0.93784 0.91893 0.84419 0.91570 0.92508 0.92810 0.84607 0.84164 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 9.24 37.16 0.34 -2.46 16 2 C 0.20 4.58 2.04 -68.87 -0.14 4.44 16 3 H 0.01 0.20 5.93 -51.92 -0.31 -0.11 16 4 C -0.60 -15.85 8.28 -34.44 -0.29 -16.13 16 5 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 6 C 0.02 0.60 5.45 -17.82 -0.10 0.51 16 7 N -0.91 -26.20 13.63 55.43 0.76 -25.44 16 8 Si 1.07 24.33 29.91 -169.99 -5.08 19.25 16 9 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.68 -13.17 5.51 -102.17 -0.56 -13.74 16 13 C 0.12 1.85 2.60 -68.86 -0.18 1.68 16 14 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 15 C -0.17 -2.56 9.12 37.16 0.34 -2.22 16 16 C -0.05 -0.68 4.95 -104.62 -0.52 -1.20 16 17 C -0.09 -1.05 9.67 -39.59 -0.38 -1.43 16 18 C -0.14 -1.63 10.03 -39.52 -0.40 -2.03 16 19 C 0.09 1.21 7.28 -39.39 -0.29 0.93 16 20 F -0.13 -1.79 16.84 2.25 0.04 -1.75 16 21 C -0.07 -0.99 6.33 -39.44 -0.25 -1.24 16 22 Cl -0.06 -0.77 28.62 -51.86 -1.48 -2.25 16 23 C -0.06 -0.86 9.10 -39.56 -0.36 -1.22 16 24 H 0.05 1.16 7.83 -51.93 -0.41 0.76 16 25 H 0.01 0.25 7.50 -51.93 -0.39 -0.14 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.27 7.70 6.39 -40.82 -0.26 7.44 16 28 H 0.34 6.55 7.44 -39.29 -0.29 6.26 16 29 H 0.07 1.11 7.43 -51.93 -0.39 0.72 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.14 1.34 8.04 -52.48 -0.42 0.92 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.14 2.04 7.25 -52.49 -0.38 1.66 16 LS Contribution 305.02 15.07 4.60 4.60 Total: -1.00 -27.97 305.02 -8.06 -36.03 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -4.11 Total: 3.70 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -2.21 Total: -20.38 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.19 Total: -39.18 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -5.08 Total: 19.25 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.48 Total: -2.25 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.97 -8.06 -36.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068613092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.584 kcal (2) G-P(sol) polarization free energy of solvation -27.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds