Wall clock time and date at job start Mon Mar 30 2020 01:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47353 * 2 1 4 4 N 1.46908 * 109.46680 * 119.99552 * 2 1 3 5 5 C 1.46906 * 110.99741 * 274.74956 * 4 2 1 6 6 H 1.09001 * 109.47116 * 32.33489 * 5 4 2 7 7 C 1.53001 * 109.46847 * 152.32995 * 5 4 2 8 8 C 1.50700 * 109.47193 * 272.33180 * 5 4 2 9 9 H 1.07996 * 120.00144 * 0.02562 * 8 5 4 10 10 C 1.37876 * 119.99822 * 180.02562 * 8 5 4 11 11 N 1.31516 * 120.00038 * 359.97438 * 10 8 5 12 12 Si 1.86797 * 120.00063 * 180.02562 * 10 8 5 13 13 H 1.48498 * 109.47003 * 359.97438 * 12 10 8 14 14 H 1.48507 * 109.47177 * 119.99744 * 12 10 8 15 15 H 1.48499 * 109.47019 * 240.00031 * 12 10 8 16 16 C 1.50696 * 109.47662 * 239.99236 * 2 1 3 17 17 C 1.38267 * 119.96775 * 279.73166 * 16 2 1 18 18 C 1.38198 * 120.04547 * 180.27503 * 17 16 2 19 19 C 1.38439 * 119.98906 * 0.02562 * 18 17 16 20 20 F 1.35100 * 120.03106 * 180.02562 * 19 18 17 21 21 C 1.38549 * 119.94162 * 359.97438 * 19 18 17 22 22 Cl 1.73595 * 120.02887 * 180.02562 * 21 19 18 23 23 C 1.38215 * 119.97124 * 99.99815 * 16 2 1 24 24 H 1.09000 * 109.47557 * 305.37941 * 1 2 3 25 25 H 1.09009 * 109.46791 * 65.37821 * 1 2 3 26 26 H 1.09002 * 109.47503 * 185.37350 * 1 2 3 27 27 H 1.00903 * 110.99975 * 150.80166 * 4 2 1 28 28 H 1.09004 * 109.47167 * 180.75496 * 7 5 4 29 29 H 1.08996 * 109.47496 * 300.76151 * 7 5 4 30 30 H 1.09007 * 109.46758 * 60.76146 * 7 5 4 31 31 H 0.96998 * 119.99838 * 179.97438 * 11 10 8 32 32 H 1.08001 * 119.97593 * 0.27046 * 17 16 2 33 33 H 1.08000 * 119.99973 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.98776 * 359.73111 * 23 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 2.0879 0.2242 2.3455 6 1 1.2939 0.9666 2.2648 7 6 1.9154 -0.5678 3.6431 8 6 3.4256 0.9183 2.3545 9 1 4.1521 0.7005 1.5857 10 6 3.7218 1.8312 3.3444 11 7 2.8369 2.0967 4.2803 12 14 5.3796 2.6920 3.3552 13 1 6.1891 2.2217 2.2025 14 1 5.1761 4.1594 3.2519 15 1 6.0917 2.3788 4.6201 16 6 2.0324 -0.7105 -1.2303 17 6 2.0718 -2.0923 -1.2622 18 6 2.5376 -2.7454 -2.3875 19 6 2.9657 -2.0160 -3.4835 20 9 3.4207 -2.6536 -4.5842 21 6 2.9260 -0.6314 -3.4510 22 17 3.4615 0.2855 -4.8243 23 6 2.4586 0.0197 -2.3237 24 1 -0.3634 0.5950 0.8379 25 1 -0.3633 0.4282 -0.9343 26 1 -0.3634 -1.0231 0.0962 27 1 2.9154 -1.1239 1.0278 28 1 1.9528 0.1141 4.4927 29 1 0.9538 -1.0806 3.6308 30 1 2.7172 -1.3012 3.7304 31 1 3.0455 2.7387 4.9769 32 1 1.7384 -2.6615 -0.4071 33 1 2.5677 -3.8247 -2.4118 34 1 2.4273 1.0989 -2.2975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068613103.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:14 Heat of formation + Delta-G solvation = -50.593581 kcal Electronic energy + Delta-G solvation = -18348.579330 eV Core-core repulsion = 15220.641462 eV Total energy + Delta-G solvation = -3127.937868 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.00113 -40.58645 -38.08625 -37.39198 -35.05918 -32.78292 -31.97956 -30.05241 -28.81486 -27.12844 -24.48982 -24.20502 -22.09428 -21.26696 -18.92199 -18.59917 -17.71382 -17.15293 -16.81068 -16.71186 -15.82575 -15.58668 -15.09038 -14.90490 -14.60700 -14.27828 -14.04405 -13.87153 -13.39771 -13.34927 -12.94852 -12.83411 -12.75811 -12.49587 -12.30169 -12.25028 -12.15457 -11.96738 -11.88159 -11.52439 -11.06268 -10.49891 -10.01133 -9.59890 -9.11606 -8.07276 -6.27269 -0.07283 0.06348 0.93013 1.36777 1.40799 1.49584 2.40049 2.41375 3.03955 3.15339 3.47593 3.71087 3.72955 4.15386 4.22035 4.40258 4.58593 4.66953 4.81203 4.86091 4.90672 4.99739 5.09024 5.15914 5.21365 5.31194 5.39198 5.47663 5.56204 5.69583 5.72341 6.10653 6.17454 6.36794 6.80404 7.01256 7.44583 8.91287 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.005035 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.675358 B = 5560.189028 C = 6258.826795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.126 3.874 3 H 0.033 0.967 4 N -0.671 5.671 5 C 0.214 3.786 6 H 0.007 0.993 7 C -0.114 4.114 8 C -0.554 4.554 9 H 0.049 0.951 10 C 0.022 3.978 11 N -0.911 5.911 12 Si 0.945 3.055 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.280 1.280 16 C -0.077 4.077 17 C -0.064 4.064 18 C -0.131 4.131 19 C 0.090 3.910 20 F -0.135 7.135 21 C -0.081 4.081 22 Cl -0.057 7.057 23 C -0.084 4.084 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.332 0.668 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.026 0.974 31 H 0.262 0.738 32 H 0.159 0.841 33 H 0.172 0.828 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 -7.481 -13.999 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.016 3.984 3 H 0.051 0.949 4 N -0.301 5.301 5 C 0.105 3.895 6 H 0.025 0.975 7 C -0.173 4.173 8 C -0.594 4.594 9 H 0.068 0.932 10 C -0.178 4.178 11 N -0.550 5.550 12 Si 0.772 3.228 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.206 1.206 16 C -0.078 4.078 17 C -0.082 4.082 18 C -0.150 4.150 19 C 0.070 3.930 20 F -0.113 7.113 21 C -0.108 4.108 22 Cl -0.028 7.028 23 C -0.103 4.103 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.149 0.851 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.176 0.824 33 H 0.189 0.811 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.711 -7.552 -13.832 15.991 hybrid contribution 1.855 1.447 -0.240 2.365 sum -0.856 -6.105 -14.072 15.363 Atomic orbital electron populations 1.21717 0.92957 1.02577 1.01060 1.20324 0.96300 0.94973 0.86788 0.94903 1.61059 1.32475 1.32766 1.03796 1.18964 0.93696 0.89083 0.87761 0.97487 1.21518 0.97440 0.98386 0.99942 1.22147 1.02214 1.24019 1.10975 0.93229 1.25603 0.99672 0.97270 0.95266 1.70003 1.35685 1.34675 1.14673 0.85706 0.80810 0.78353 0.77947 1.19618 1.20843 1.20603 1.20083 0.98388 0.94592 0.94758 1.21229 0.95709 0.93332 0.97958 1.21401 1.00174 1.02212 0.91188 1.17590 1.01581 0.88515 0.85359 1.91507 1.86680 1.81731 1.51410 1.20982 1.07094 0.90711 0.92024 1.98368 1.88746 1.73630 1.42058 1.20944 0.97435 1.01211 0.90756 0.93957 0.91457 0.91203 0.85081 0.92715 0.95124 0.95503 0.92894 0.82390 0.81075 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.36 71.98 0.67 -3.00 16 2 C 0.13 4.18 2.62 44.17 0.12 4.29 16 3 H 0.03 1.27 7.59 -2.39 -0.02 1.26 16 4 N -0.67 -25.28 5.45 -477.13 -2.60 -27.88 16 5 C 0.21 10.12 2.39 44.17 0.11 10.22 16 6 H 0.01 0.38 7.18 -2.39 -0.02 0.36 16 7 C -0.11 -5.35 9.29 71.98 0.67 -4.68 16 8 C -0.55 -28.92 8.40 25.60 0.21 -28.70 16 9 H 0.05 2.58 7.70 -2.91 -0.02 2.55 16 10 C 0.02 1.18 5.30 84.65 0.45 1.63 16 11 N -0.91 -50.87 11.33 21.45 0.24 -50.63 16 12 Si 0.95 42.63 29.54 68.60 2.03 44.65 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 15 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 16 C -0.08 -2.13 4.72 -19.86 -0.09 -2.22 16 17 C -0.06 -1.49 8.99 22.27 0.20 -1.29 16 18 C -0.13 -2.73 10.03 22.31 0.22 -2.51 16 19 C 0.09 2.18 7.28 22.39 0.16 2.35 16 20 F -0.13 -3.35 16.84 44.97 0.76 -2.59 16 21 C -0.08 -2.08 6.33 22.36 0.14 -1.94 16 22 Cl -0.06 -1.40 28.62 -2.72 -0.08 -1.48 16 23 C -0.08 -2.26 9.45 22.28 0.21 -2.05 16 24 H 0.04 1.39 7.55 -2.39 -0.02 1.37 16 25 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.33 12.42 7.59 -89.69 -0.68 11.74 16 28 H 0.05 2.85 6.09 -2.39 -0.01 2.84 16 29 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.16 3.43 7.71 -2.91 -0.02 3.40 16 33 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.14 3.69 8.04 -2.91 -0.02 3.66 16 Total: -1.00 -55.80 305.60 3.85 -51.95 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.43 Total: 13.87 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: 3.07 Total: -27.90 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -2.36 Total: -78.51 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.76 Total: -2.59 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -55.80 3.85 -51.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068613103.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.356 kcal (2) G-P(sol) polarization free energy of solvation -55.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds