Wall clock time and date at job start Mon Mar 30 2020 00:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34230 * 117.00236 * 2 1 4 4 O 1.20822 * 120.00279 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00164 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47136 * 300.00393 * 5 3 2 7 7 N 1.46497 * 109.47548 * 179.97438 * 5 3 2 8 8 C 1.36938 * 120.00272 * 156.44026 * 7 5 3 9 9 H 1.07999 * 119.99341 * 0.02562 * 8 7 5 10 10 C 1.38813 * 120.00046 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00002 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 119.99914 * 180.02562 * 10 8 7 13 13 H 1.48509 * 109.46989 * 89.99814 * 12 10 8 14 14 H 1.48497 * 109.47207 * 209.99585 * 12 10 8 15 15 H 1.48499 * 109.47598 * 330.00160 * 12 10 8 16 16 C 1.50704 * 109.46806 * 60.00037 * 5 3 2 17 17 C 1.38202 * 120.00064 * 94.87136 * 16 5 3 18 18 C 1.38431 * 120.00316 * 179.76777 * 17 16 5 19 19 F 1.35100 * 120.00248 * 180.23033 * 18 17 16 20 20 C 1.38474 * 119.99397 * 0.53061 * 18 17 16 21 21 C 1.38162 * 120.00217 * 359.72047 * 20 18 17 22 22 C 1.38430 * 120.00004 * 275.14222 * 16 5 3 23 23 F 1.35096 * 120.00028 * 359.97438 * 22 16 5 24 24 H 1.08995 * 109.47374 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47205 * 300.00456 * 1 2 3 26 26 H 1.09001 * 109.47300 * 60.00106 * 1 2 3 27 27 H 0.97000 * 119.99410 * 336.44775 * 7 5 3 28 28 H 0.96995 * 120.00191 * 179.97438 * 11 10 8 29 29 H 1.08003 * 120.00074 * 0.02562 * 17 16 5 30 30 H 1.08004 * 119.99702 * 179.70256 * 20 18 17 31 31 H 1.08004 * 119.99599 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9557 0.7808 0.8908 7 7 3.9818 2.6796 -0.0002 8 6 5.2182 3.0283 0.4741 9 1 5.8871 2.2674 0.8484 10 6 5.6116 4.3595 0.4739 11 7 4.7965 5.2865 0.0174 12 14 7.2985 4.8349 1.1202 13 1 8.2820 4.8021 0.0080 14 1 7.2420 6.2048 1.6907 15 1 7.7127 3.8759 2.1756 16 6 4.1055 0.5914 -1.2296 17 6 4.3938 1.3312 -2.3608 18 6 4.8937 0.7042 -3.4892 19 9 5.1798 1.4280 -4.5934 20 6 5.0945 -0.6659 -3.4881 21 6 4.8014 -1.4063 -2.3590 22 6 4.3069 -0.7782 -1.2284 23 9 4.0204 -1.5021 -0.1243 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.3810 3.3628 -0.3365 28 1 5.0713 6.2168 0.0175 29 1 4.2330 2.3992 -2.3631 30 1 5.4799 -1.1559 -4.3701 31 1 4.9577 -2.4749 -2.3584 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069708272.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:58 Heat of formation + Delta-G solvation = -147.987380 kcal Electronic energy + Delta-G solvation = -20970.253829 eV Core-core repulsion = 17273.923179 eV Total energy + Delta-G solvation = -3696.330650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.89420 -49.82743 -41.69585 -39.81959 -37.77659 -36.58285 -34.06585 -31.61434 -31.07160 -29.36781 -27.65346 -25.39208 -23.82641 -23.39859 -21.62102 -19.87056 -18.86110 -18.38586 -18.27786 -17.95177 -17.71515 -17.25814 -16.72723 -16.49430 -16.23609 -15.39580 -15.35413 -15.15682 -15.09988 -14.76601 -14.21105 -14.10324 -13.65087 -13.38839 -13.12930 -13.01841 -12.87294 -12.77368 -12.23479 -12.12333 -11.86015 -11.81717 -11.68706 -11.16564 -10.06883 -9.48537 -9.29525 -8.02500 -5.38960 -0.05358 0.09844 1.06314 1.45756 1.48582 1.56973 1.65096 2.41420 2.53155 3.15895 3.23320 3.30048 3.56077 3.65069 3.83461 3.96636 4.13143 4.19970 4.31212 4.31431 4.36982 4.67675 4.77972 4.98309 5.11366 5.12268 5.22505 5.26567 5.43732 5.85001 6.12008 6.65344 7.22110 7.80318 8.09856 9.19590 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.013705 B = 0.008212 C = 0.006307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.569755 B = 3408.786034 C = 4438.094585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.466 3.534 4 O -0.526 6.526 5 C 0.222 3.778 6 H 0.107 0.893 7 N -0.712 5.712 8 C -0.252 4.252 9 H 0.086 0.914 10 C -0.062 4.062 11 N -0.962 5.962 12 Si 0.978 3.022 13 H -0.284 1.284 14 H -0.295 1.295 15 H -0.264 1.264 16 C -0.119 4.119 17 C -0.107 4.107 18 C 0.067 3.933 19 F -0.146 7.146 20 C -0.108 4.108 21 C -0.115 4.115 22 C 0.100 3.900 23 F -0.129 7.129 24 H 0.141 0.859 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.383 0.617 28 H 0.255 0.745 29 H 0.116 0.884 30 H 0.182 0.818 31 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.710 -17.450 -5.038 18.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.308 3.692 4 O -0.415 6.415 5 C 0.110 3.890 6 H 0.124 0.876 7 N -0.353 5.353 8 C -0.382 4.382 9 H 0.104 0.896 10 C -0.255 4.255 11 N -0.610 5.610 12 Si 0.806 3.194 13 H -0.211 1.211 14 H -0.222 1.222 15 H -0.188 1.188 16 C -0.124 4.124 17 C -0.126 4.126 18 C 0.048 3.952 19 F -0.125 7.125 20 C -0.127 4.127 21 C -0.133 4.133 22 C 0.080 3.920 23 F -0.108 7.108 24 H 0.159 0.841 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.217 0.783 28 H 0.063 0.937 29 H 0.134 0.866 30 H 0.199 0.801 31 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.802 -17.135 -4.928 18.049 hybrid contribution 0.182 1.522 0.319 1.565 sum -2.620 -15.613 -4.609 16.489 Atomic orbital electron populations 1.23603 0.74731 1.05974 1.02370 1.86533 1.25033 1.31580 1.83540 1.24100 0.92084 0.81677 0.71328 1.90636 1.67080 1.37640 1.46113 1.18601 0.85589 0.88193 0.96655 0.87610 1.42378 1.17253 1.00806 1.74895 1.19528 0.91851 0.92467 1.34375 0.89644 1.25658 1.02198 0.95708 1.01972 1.69864 1.37827 1.00593 1.52708 0.85090 0.79025 0.77147 0.78151 1.21119 1.22172 1.18826 1.20414 1.02816 0.92712 0.96409 1.20819 0.99203 1.00898 0.91689 1.17877 1.03173 0.90928 0.83206 1.91472 1.91511 1.78368 1.51124 1.21306 1.00355 0.90150 1.00846 1.21292 0.99328 1.02740 0.89937 1.17618 1.01503 0.87807 0.85051 1.91497 1.91189 1.76854 1.51242 0.84136 0.92134 0.92274 0.78297 0.93659 0.86563 0.80086 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.35 -11.18 10.37 -51.41 -0.53 -11.71 16 3 C 0.47 18.63 7.31 71.24 0.52 19.15 16 4 O -0.53 -24.43 15.57 21.98 0.34 -24.09 16 5 C 0.22 9.25 2.78 43.50 0.12 9.37 16 6 H 0.11 4.26 7.74 -2.39 -0.02 4.24 16 7 N -0.71 -36.79 3.75 -330.08 -1.24 -38.02 16 8 C -0.25 -13.73 9.91 84.03 0.83 -12.89 16 9 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 10 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 11 N -0.96 -59.10 13.06 21.65 0.28 -58.82 16 12 Si 0.98 45.50 29.55 68.60 2.03 47.53 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 15 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 16 C -0.12 -4.35 4.93 -19.83 -0.10 -4.45 16 17 C -0.11 -4.10 9.30 22.31 0.21 -3.90 16 18 C 0.07 2.13 7.30 22.37 0.16 2.29 16 19 F -0.15 -4.83 17.27 44.97 0.78 -4.05 16 20 C -0.11 -2.40 10.02 22.31 0.22 -2.17 16 21 C -0.11 -2.43 10.02 22.31 0.22 -2.21 16 22 C 0.10 2.91 7.18 22.37 0.16 3.08 16 23 F -0.13 -3.69 16.51 44.97 0.74 -2.95 16 24 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 1.43 8.13 -2.38 -0.02 1.41 16 26 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 27 H 0.38 22.07 6.95 -92.71 -0.64 21.43 16 28 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.12 5.36 7.26 -2.91 -0.02 5.34 16 30 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -68.93 290.84 6.96 -61.97 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.54 Total: 23.13 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 4.02 Total: 7.02 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -0.96 Total: -96.84 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -0.19 Total: -35.80 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 1.52 Total: -7.00 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -68.93 6.96 -61.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069708272.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.015 kcal (2) G-P(sol) polarization free energy of solvation -68.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds