Wall clock time and date at job start Mon Mar 30 2020 00:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34238 * 116.99573 * 2 1 4 4 O 1.20831 * 119.99837 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99842 * 179.97438 * 3 2 1 6 6 H 1.08994 * 109.47381 * 60.00003 * 5 3 2 7 7 N 1.46505 * 109.46927 * 179.97438 * 5 3 2 8 8 C 1.36931 * 119.99788 * 274.99864 * 7 5 3 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 5 11 11 N 1.31617 * 119.99873 * 180.27450 * 10 8 7 12 12 Si 1.86800 * 120.00209 * 0.27770 * 10 8 7 13 13 H 1.48498 * 109.47118 * 89.99559 * 12 10 8 14 14 H 1.48499 * 109.47134 * 210.00079 * 12 10 8 15 15 H 1.48507 * 109.46904 * 329.99901 * 12 10 8 16 16 C 1.50696 * 109.47100 * 299.99651 * 5 3 2 17 17 C 1.38212 * 120.00174 * 265.00382 * 16 5 3 18 18 C 1.38427 * 120.00023 * 179.97438 * 17 16 5 19 19 F 1.35094 * 120.00283 * 179.97438 * 18 17 16 20 20 C 1.38480 * 119.99857 * 359.97438 * 18 17 16 21 21 C 1.38162 * 119.99906 * 0.02562 * 20 18 17 22 22 C 1.38428 * 119.99970 * 84.72776 * 16 5 3 23 23 F 1.35105 * 119.99862 * 0.02562 * 22 16 5 24 24 H 1.09009 * 109.46881 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47555 * 300.00009 * 1 2 3 26 26 H 1.09001 * 109.47632 * 60.00775 * 1 2 3 27 27 H 0.97000 * 119.99792 * 94.99659 * 7 5 3 28 28 H 0.97000 * 120.00553 * 180.02562 * 11 10 8 29 29 H 1.07996 * 119.99775 * 359.97438 * 17 16 5 30 30 H 1.07999 * 119.99703 * 179.97438 * 20 18 17 31 31 H 1.08004 * 119.99364 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4031 2.2094 -0.0005 5 6 3.5662 1.2751 0.0006 6 1 3.9563 0.7808 -0.8891 7 7 3.9815 2.6800 -0.0002 8 6 4.0769 3.3651 -1.1819 9 1 3.8457 2.8699 -2.1135 10 6 4.4649 4.6979 -1.1821 11 7 4.5514 5.3580 -2.3175 12 14 4.8642 5.5547 0.4291 13 1 6.3089 5.3920 0.7315 14 1 4.5421 6.9998 0.3143 15 1 4.0588 4.9534 1.5223 16 6 4.1045 0.5923 1.2314 17 6 4.3943 1.3330 2.3617 18 6 4.8884 0.7057 3.4925 19 9 5.1721 1.4298 4.5971 20 6 5.0917 -0.6641 3.4914 21 6 4.8020 -1.4045 2.3614 22 6 4.3034 -0.7776 1.2319 23 9 4.0154 -1.5024 0.1287 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5137 -0.8900 27 1 4.1888 3.1249 0.8365 28 1 4.8229 6.2892 -2.3178 29 1 4.2354 2.4012 2.3627 30 1 5.4775 -1.1534 4.3735 31 1 4.9610 -2.4728 2.3605 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069708275.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:01 Heat of formation + Delta-G solvation = -142.524900 kcal Electronic energy + Delta-G solvation = -20988.099141 eV Core-core repulsion = 17292.005362 eV Total energy + Delta-G solvation = -3696.093779 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.97480 -49.88776 -41.59224 -39.96833 -37.73556 -36.68642 -34.26127 -32.12614 -31.30079 -29.39288 -27.77112 -25.31232 -23.84227 -23.47460 -21.66720 -20.35538 -18.92305 -18.47828 -18.27044 -18.00152 -17.79235 -17.22469 -16.78887 -16.52239 -16.29360 -15.95018 -15.41483 -15.36590 -15.00861 -14.62663 -14.38516 -14.15522 -13.77390 -13.48286 -13.33927 -13.05904 -13.02682 -12.82103 -12.32809 -12.18482 -11.85421 -11.82367 -11.74313 -11.20172 -10.22192 -9.71565 -9.54896 -8.15970 -5.55720 -0.16271 -0.06244 1.21852 1.28853 1.33172 1.37863 1.74920 2.31527 2.36106 2.98442 3.11122 3.19541 3.24729 3.39885 3.60057 3.89298 4.04794 4.12698 4.28340 4.32009 4.33657 4.60193 4.66774 4.90821 4.92650 4.98432 5.05109 5.36537 5.54180 5.72508 6.03284 6.76439 6.88400 7.51876 7.69286 9.03925 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.008613 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.118259 B = 3250.267849 C = 4388.781875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.432 3.568 4 O -0.526 6.526 5 C 0.229 3.771 6 H 0.112 0.888 7 N -0.713 5.713 8 C -0.247 4.247 9 H 0.063 0.937 10 C -0.044 4.044 11 N -0.968 5.968 12 Si 0.943 3.057 13 H -0.262 1.262 14 H -0.288 1.288 15 H -0.261 1.261 16 C -0.106 4.106 17 C -0.134 4.134 18 C 0.083 3.917 19 F -0.139 7.139 20 C -0.102 4.102 21 C -0.104 4.104 22 C 0.108 3.892 23 F -0.128 7.128 24 H 0.138 0.862 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.373 0.627 28 H 0.263 0.737 29 H 0.123 0.877 30 H 0.188 0.812 31 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 -17.949 13.809 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.272 3.728 4 O -0.413 6.413 5 C 0.115 3.885 6 H 0.130 0.870 7 N -0.356 5.356 8 C -0.377 4.377 9 H 0.081 0.919 10 C -0.237 4.237 11 N -0.616 5.616 12 Si 0.769 3.231 13 H -0.187 1.187 14 H -0.214 1.214 15 H -0.186 1.186 16 C -0.108 4.108 17 C -0.153 4.153 18 C 0.064 3.936 19 F -0.118 7.118 20 C -0.120 4.120 21 C -0.122 4.122 22 C 0.088 3.912 23 F -0.106 7.106 24 H 0.156 0.844 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.210 0.790 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.205 0.795 31 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.852 -17.556 13.555 22.196 hybrid contribution -0.396 1.617 0.143 1.671 sum -1.249 -15.939 13.697 21.053 Atomic orbital electron populations 1.23493 0.75901 1.05536 1.01812 1.86580 1.24299 1.32817 1.83823 1.26099 0.93957 0.81401 0.71391 1.90617 1.67211 1.37917 1.45572 1.18705 0.85570 0.86472 0.97718 0.87033 1.42666 1.78758 1.08096 1.06037 1.18905 1.38845 0.94147 0.85761 0.91913 1.25424 1.01173 0.96924 1.00159 1.69847 1.54299 1.10652 1.26792 0.85621 0.79192 0.78166 0.80131 1.18714 1.21408 1.18644 1.19446 1.03261 0.93259 0.94793 1.20781 1.01458 1.00866 0.92206 1.17696 1.02217 0.90849 0.82833 1.91507 1.91368 1.78138 1.50763 1.21405 0.99566 0.90208 1.00805 1.21366 0.98250 1.03063 0.89566 1.17569 1.00915 0.87419 0.85290 1.91533 1.91023 1.76738 1.51332 0.84390 0.92518 0.93060 0.79001 0.92749 0.85885 0.79507 0.79204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.55 113.37 1.20 1.87 16 2 O -0.36 -12.07 10.34 -51.49 -0.53 -12.60 16 3 C 0.43 17.99 7.28 71.24 0.52 18.51 16 4 O -0.53 -26.04 16.09 21.95 0.35 -25.69 16 5 C 0.23 9.28 2.78 43.50 0.12 9.40 16 6 H 0.11 4.50 7.73 -2.39 -0.02 4.48 16 7 N -0.71 -34.75 4.37 -330.09 -1.44 -36.19 16 8 C -0.25 -14.38 10.30 84.04 0.87 -13.52 16 9 H 0.06 3.98 8.06 -2.91 -0.02 3.96 16 10 C -0.04 -2.61 5.50 84.86 0.47 -2.14 16 11 N -0.97 -62.26 13.97 21.65 0.30 -61.95 16 12 Si 0.94 45.99 27.74 68.60 1.90 47.89 16 13 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 14 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 15 H -0.26 -11.94 6.51 99.48 0.65 -11.30 16 16 C -0.11 -3.39 4.99 -19.83 -0.10 -3.49 16 17 C -0.13 -4.14 9.21 22.31 0.21 -3.94 16 18 C 0.08 2.03 7.30 22.37 0.16 2.19 16 19 F -0.14 -3.52 17.27 44.97 0.78 -2.75 16 20 C -0.10 -1.65 10.02 22.31 0.22 -1.42 16 21 C -0.10 -1.71 10.02 22.31 0.22 -1.49 16 22 C 0.11 2.73 7.17 22.37 0.16 2.89 16 23 F -0.13 -3.40 16.49 44.97 0.74 -2.66 16 24 H 0.14 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.06 1.46 8.13 -2.39 -0.02 1.44 16 26 H 0.05 1.41 8.13 -2.39 -0.02 1.39 16 27 H 0.37 17.45 3.26 -92.71 -0.30 17.14 16 28 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 29 H 0.12 4.28 6.07 -2.91 -0.02 4.26 16 30 H 0.19 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -74.78 286.09 6.97 -67.81 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.82 Total: 17.27 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 4.05 Total: 8.87 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -1.14 Total: -98.14 kcal Atomic # 8 Polarization: -38.11 SS G_CDS: -0.18 Total: -38.29 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 1.52 Total: -5.40 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Total: -74.78 6.97 -67.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069708275.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.720 kcal (2) G-P(sol) polarization free energy of solvation -74.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds