Wall clock time and date at job start Mon Mar 30 2020 01:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86797 * 119.99726 * 2 1 4 4 H 1.48499 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47261 * 300.00111 * 3 2 1 6 6 H 1.48505 * 109.47164 * 59.99827 * 3 2 1 7 7 C 1.38948 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99668 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00339 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00376 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00037 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00436 * 180.02562 * 10 9 7 13 13 O 1.42899 * 109.47310 * 180.02562 * 12 10 9 14 14 C 1.35800 * 116.99906 * 179.97438 * 13 12 10 15 15 C 1.36656 * 120.23007 * 0.02562 * 14 13 12 16 16 C 1.39202 * 120.92411 * 179.97438 * 15 14 13 17 17 C 1.36177 * 121.05636 * 0.05712 * 16 15 14 18 18 C 1.40525 * 119.76999 * 359.96460 * 17 16 15 19 19 C 1.40556 * 121.27012 * 180.02562 * 18 17 16 20 20 C 1.36102 * 119.64420 * 179.97438 * 19 18 17 21 21 C 1.39357 * 120.98520 * 359.97438 * 20 19 18 22 22 C 1.36138 * 120.97318 * 359.97438 * 21 20 19 23 23 C 1.40416 * 119.66270 * 0.02562 * 22 21 20 24 24 H 0.97001 * 120.00397 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99882 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.46817 * 60.00359 * 12 10 9 27 27 H 1.08996 * 109.46585 * 300.00151 * 12 10 9 28 28 H 1.07997 * 119.54344 * 0.02562 * 15 14 13 29 29 H 1.08001 * 119.47170 * 180.02562 * 16 15 14 30 30 H 1.08001 * 120.11454 * 180.23115 * 17 16 15 31 31 H 1.07997 * 120.17662 * 359.95424 * 19 18 17 32 32 H 1.08001 * 119.51062 * 179.97438 * 20 19 18 33 33 H 1.07996 * 119.51957 * 179.97438 * 21 20 19 34 34 H 1.07996 * 120.17188 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2439 -4.8630 -0.0022 13 8 2.1725 -5.9491 -0.0027 14 6 1.6535 -7.2040 -0.0027 15 6 0.2994 -7.3885 -0.0028 16 6 -0.2481 -8.6683 -0.0033 17 6 0.5480 -9.7731 -0.0026 18 6 1.9456 -9.6260 -0.0021 19 6 2.7969 -10.7443 -0.0019 20 6 4.1459 -10.5635 -0.0019 21 6 4.6982 -9.2841 -0.0026 22 6 3.9042 -8.1782 -0.0038 23 6 2.5078 -8.3253 -0.0039 24 1 -0.4851 0.8400 0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6169 -4.9201 -0.8920 27 1 0.6176 -4.9213 0.8880 28 1 -0.3551 -6.5295 -0.0032 29 1 -1.3216 -8.7870 -0.0038 30 1 0.1069 -10.7589 -0.0068 31 1 2.3829 -11.7418 -0.0014 32 1 4.7980 -11.4244 -0.0013 33 1 5.7719 -9.1680 -0.0021 34 1 4.3461 -7.1928 -0.0048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070266659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:42 Heat of formation + Delta-G solvation = -31.826332 kcal Electronic energy + Delta-G solvation = -19243.405370 eV Core-core repulsion = 16106.341371 eV Total energy + Delta-G solvation = -3137.063999 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.68356 -38.87511 -37.60260 -35.91993 -34.03708 -32.10539 -31.38592 -30.40012 -28.85631 -27.95243 -24.72234 -23.30069 -22.93893 -21.57479 -19.62400 -18.19537 -17.92142 -17.37108 -16.62310 -15.89283 -15.89102 -15.48331 -14.84224 -14.30534 -14.12477 -13.84186 -13.78703 -13.68030 -13.05461 -12.88417 -12.71948 -12.02040 -11.88910 -11.63469 -11.44968 -11.15043 -11.02038 -10.82305 -10.75418 -10.40186 -10.32035 -9.63733 -9.40717 -8.66773 -8.52790 -8.09941 -7.51204 -6.52029 -3.93741 0.64659 0.98489 2.11118 3.03061 3.10402 3.10618 3.23553 3.32388 3.71608 4.13532 4.13785 4.66261 4.74703 4.85011 4.98631 5.03976 5.12231 5.15587 5.17371 5.37790 5.43955 5.46217 5.61323 5.62270 5.98216 6.00856 6.07967 6.10728 6.24174 6.42931 6.56820 6.57263 6.73289 6.96820 7.46521 7.50782 7.92965 8.46980 9.05915 9.37596 9.87787 10.65379 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.036553 B = 0.003613 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.816706 B = 7748.964624 C = 8499.637251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.440 3.560 11 O -0.574 6.574 12 C 0.050 3.950 13 O -0.278 6.278 14 C 0.160 3.840 15 C -0.236 4.236 16 C -0.067 4.067 17 C -0.161 4.161 18 C -0.016 4.016 19 C -0.125 4.125 20 C -0.102 4.102 21 C -0.139 4.139 22 C -0.072 4.072 23 C -0.074 4.074 24 H 0.273 0.727 25 H 0.394 0.606 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.721 -18.447 -0.008 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.225 3.775 11 O -0.458 6.458 12 C -0.028 4.028 13 O -0.189 6.189 14 C 0.112 3.888 15 C -0.255 4.255 16 C -0.085 4.085 17 C -0.179 4.179 18 C -0.016 4.016 19 C -0.143 4.143 20 C -0.120 4.120 21 C -0.157 4.157 22 C -0.090 4.090 23 C -0.075 4.075 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.182 -18.198 -0.009 18.199 hybrid contribution -0.641 0.910 0.001 1.113 sum -0.459 -17.288 -0.008 17.294 Atomic orbital electron populations 1.69613 1.05998 1.28374 1.49899 1.25300 0.95688 0.99855 0.96907 0.85748 0.79751 0.80749 0.77812 1.19074 1.20606 1.20611 1.19778 0.93524 0.81764 1.47993 0.87582 1.41695 1.09291 1.04099 1.64000 1.19287 0.88333 0.84022 0.85887 1.90568 1.13466 1.86739 1.54996 1.22565 0.91884 0.85962 1.02435 1.86132 1.35027 1.11039 1.86728 1.18867 0.91811 0.84668 0.93419 1.20913 0.93852 0.98966 1.11790 1.20558 0.99754 0.91634 0.96528 1.20802 0.92040 0.98876 1.06210 1.17879 0.93770 0.91719 0.98257 1.20909 0.93429 0.97515 1.02444 1.20879 0.95204 0.97242 0.98723 1.20827 1.00099 0.92318 1.02502 1.21169 0.92123 0.99995 0.95732 1.17491 0.93420 0.90614 1.05969 0.91695 0.77239 0.90186 0.90194 0.85174 0.85923 0.85773 0.85607 0.86144 0.85919 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.84 13.05 55.50 0.72 -23.11 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.29 9.68 -14.94 -0.14 -8.43 16 8 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -13.82 5.29 -10.96 -0.06 -13.87 16 10 C 0.44 10.54 7.86 -10.98 -0.09 10.46 16 11 O -0.57 -16.10 16.08 -14.37 -0.23 -16.33 16 12 C 0.05 0.92 5.22 36.01 0.19 1.10 16 13 O -0.28 -5.34 8.90 -39.02 -0.35 -5.68 16 14 C 0.16 2.62 6.67 -39.12 -0.26 2.36 16 15 C -0.24 -3.28 8.98 -39.80 -0.36 -3.64 16 16 C -0.07 -0.78 9.94 -39.96 -0.40 -1.18 16 17 C -0.16 -1.87 9.77 -39.46 -0.39 -2.25 16 18 C -0.02 -0.21 5.74 -106.84 -0.61 -0.83 16 19 C -0.13 -1.38 9.77 -39.48 -0.39 -1.76 16 20 C -0.10 -1.09 9.95 -39.93 -0.40 -1.49 16 21 C -0.14 -1.69 9.95 -39.92 -0.40 -2.09 16 22 C -0.07 -1.08 9.56 -39.52 -0.38 -1.45 16 23 C -0.07 -1.16 5.75 -106.72 -0.61 -1.77 16 24 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 26 H 0.08 1.26 7.65 -51.93 -0.40 0.86 16 27 H 0.08 1.26 7.65 -51.93 -0.40 0.86 16 28 H 0.13 1.62 6.21 -52.49 -0.33 1.29 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.14 2.20 7.62 -52.49 -0.40 1.80 16 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -31.87 301.31 -8.19 -40.06 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -3.47 Total: 9.21 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -4.33 Total: -10.42 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.67 Total: -36.99 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.58 Total: -22.01 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.87 -8.19 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070266659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.231 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds