Wall clock time and date at job start Mon Mar 30 2020 01:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86797 * 119.99726 * 2 1 4 4 H 1.48499 * 109.47287 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47261 * 300.00111 * 3 2 1 6 6 H 1.48505 * 109.47164 * 59.99827 * 3 2 1 7 7 C 1.38948 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99668 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00339 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00376 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00037 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00436 * 180.02562 * 10 9 7 13 13 O 1.42899 * 109.47310 * 180.02562 * 12 10 9 14 14 C 1.35800 * 116.99906 * 179.97438 * 13 12 10 15 15 C 1.36656 * 120.23007 * 0.02562 * 14 13 12 16 16 C 1.39202 * 120.92411 * 179.97438 * 15 14 13 17 17 C 1.36177 * 121.05636 * 0.05712 * 16 15 14 18 18 C 1.40525 * 119.76999 * 359.96460 * 17 16 15 19 19 C 1.40556 * 121.27012 * 180.02562 * 18 17 16 20 20 C 1.36102 * 119.64420 * 179.97438 * 19 18 17 21 21 C 1.39357 * 120.98520 * 359.97438 * 20 19 18 22 22 C 1.36138 * 120.97318 * 359.97438 * 21 20 19 23 23 C 1.40416 * 119.66270 * 0.02562 * 22 21 20 24 24 H 0.97001 * 120.00397 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99882 * 0.02562 * 9 7 2 26 26 H 1.09002 * 109.46817 * 60.00359 * 12 10 9 27 27 H 1.08996 * 109.46585 * 300.00151 * 12 10 9 28 28 H 1.07997 * 119.54344 * 0.02562 * 15 14 13 29 29 H 1.08001 * 119.47170 * 180.02562 * 16 15 14 30 30 H 1.08001 * 120.11454 * 180.23115 * 17 16 15 31 31 H 1.07997 * 120.17662 * 359.95424 * 19 18 17 32 32 H 1.08001 * 119.51062 * 179.97438 * 20 19 18 33 33 H 1.07996 * 119.51957 * 179.97438 * 21 20 19 34 34 H 1.07996 * 120.17188 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2439 -4.8630 -0.0022 13 8 2.1725 -5.9491 -0.0027 14 6 1.6535 -7.2040 -0.0027 15 6 0.2994 -7.3885 -0.0028 16 6 -0.2481 -8.6683 -0.0033 17 6 0.5480 -9.7731 -0.0026 18 6 1.9456 -9.6260 -0.0021 19 6 2.7969 -10.7443 -0.0019 20 6 4.1459 -10.5635 -0.0019 21 6 4.6982 -9.2841 -0.0026 22 6 3.9042 -8.1782 -0.0038 23 6 2.5078 -8.3253 -0.0039 24 1 -0.4851 0.8400 0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6169 -4.9201 -0.8920 27 1 0.6176 -4.9213 0.8880 28 1 -0.3551 -6.5295 -0.0032 29 1 -1.3216 -8.7870 -0.0038 30 1 0.1069 -10.7589 -0.0068 31 1 2.3829 -11.7418 -0.0014 32 1 4.7980 -11.4244 -0.0013 33 1 5.7719 -9.1680 -0.0021 34 1 4.3461 -7.1928 -0.0048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070266659.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:41 Heat of formation + Delta-G solvation = -50.940291 kcal Electronic energy + Delta-G solvation = -19244.234213 eV Core-core repulsion = 16106.341371 eV Total energy + Delta-G solvation = -3137.892843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.76544 -40.40797 -39.15440 -36.91788 -36.07215 -33.46708 -33.08259 -31.37917 -30.05362 -29.30835 -26.62315 -24.27925 -23.96913 -22.65619 -21.41348 -20.11169 -19.15562 -18.51059 -17.69926 -17.47710 -17.30515 -16.67147 -16.52942 -15.86251 -15.43119 -15.31398 -15.07003 -14.73016 -14.35314 -14.23475 -13.93302 -13.58887 -13.14055 -13.00226 -12.90234 -12.57065 -12.49316 -12.13563 -11.94503 -11.92760 -11.74072 -11.61546 -10.51171 -10.46578 -10.13405 -9.62405 -8.54932 -8.52603 -6.05216 -0.33508 0.02282 1.11239 1.32685 1.40485 1.53972 1.80903 1.85403 2.09420 2.32001 3.10417 3.15997 3.17831 3.74565 3.82828 3.95095 3.99086 4.13583 4.16334 4.21283 4.31318 4.36518 4.50415 4.54651 4.67387 5.01805 5.11846 5.16314 5.32841 5.34696 5.48232 5.59747 5.62714 5.76765 5.87808 6.05948 6.33560 6.49869 7.01497 7.38218 7.93277 8.62317 Molecular weight = 271.10amu Principal moments of inertia in cm(-1) A = 0.036553 B = 0.003613 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.816706 B = 7748.964624 C = 8499.637251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.006 4.006 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.340 4.340 8 H 0.080 0.920 9 N -0.556 5.556 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.065 3.935 13 O -0.313 6.313 14 C 0.115 3.885 15 C -0.229 4.229 16 C -0.079 4.079 17 C -0.145 4.145 18 C -0.037 4.037 19 C -0.114 4.114 20 C -0.107 4.107 21 C -0.130 4.130 22 C -0.115 4.115 23 C -0.097 4.097 24 H 0.281 0.719 25 H 0.401 0.599 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.142 0.858 29 H 0.157 0.843 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.158 0.842 33 H 0.140 0.860 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 -20.800 -0.009 20.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.207 4.207 3 Si 0.819 3.181 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.469 4.469 8 H 0.098 0.902 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.511 6.511 12 C -0.013 4.013 13 O -0.226 6.226 14 C 0.069 3.931 15 C -0.248 4.248 16 C -0.096 4.096 17 C -0.163 4.163 18 C -0.038 4.038 19 C -0.132 4.132 20 C -0.125 4.125 21 C -0.147 4.147 22 C -0.133 4.133 23 C -0.097 4.097 24 H 0.091 0.909 25 H 0.236 0.764 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.159 0.841 29 H 0.174 0.826 30 H 0.180 0.820 31 H 0.182 0.818 32 H 0.175 0.825 33 H 0.157 0.843 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.414 -20.566 -0.009 20.615 hybrid contribution -0.164 1.479 0.001 1.488 sum -1.578 -19.087 -0.008 19.152 Atomic orbital electron populations 1.69658 1.06812 1.29694 1.49149 1.26082 0.96612 1.02423 0.95608 0.84827 0.77969 0.76688 0.78583 1.19881 1.19261 1.19270 1.19725 0.92838 0.83575 1.50771 0.90221 1.41704 1.09528 1.04054 1.64079 1.20271 0.88086 0.85675 0.83916 1.90526 1.15958 1.87819 1.56826 1.22347 0.90956 0.83155 1.04878 1.86067 1.36022 1.12321 1.88149 1.19160 0.93276 0.83583 0.97049 1.21211 0.92834 1.00720 1.10003 1.20944 1.01600 0.90628 0.96459 1.21286 0.91182 1.00585 1.03233 1.18274 0.95251 0.91286 0.98943 1.21390 0.93357 0.98393 1.00045 1.21278 0.95936 0.97351 0.97898 1.21139 1.00839 0.92466 1.00303 1.21065 0.92900 0.99698 0.99633 1.17812 0.93592 0.91719 1.06595 0.90894 0.76393 0.87533 0.87545 0.84075 0.82551 0.82017 0.81798 0.82454 0.84251 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.22 13.05 21.66 0.28 -47.93 16 2 C -0.01 -0.34 5.50 84.93 0.47 0.13 16 3 Si 1.00 42.43 29.55 68.60 2.03 44.46 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.34 -19.41 9.68 84.04 0.81 -18.60 16 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 9 N -0.56 -28.78 5.29 -306.98 -1.62 -30.40 16 10 C 0.43 21.81 7.86 87.66 0.69 22.50 16 11 O -0.62 -37.41 16.08 15.95 0.26 -37.15 16 12 C 0.06 2.43 5.22 71.24 0.37 2.80 16 13 O -0.31 -12.76 8.90 -72.27 -0.64 -13.40 16 14 C 0.11 3.89 6.67 22.57 0.15 4.04 16 15 C -0.23 -6.13 8.98 22.13 0.20 -5.93 16 16 C -0.08 -1.62 9.94 22.02 0.22 -1.40 16 17 C -0.15 -2.85 9.77 22.35 0.22 -2.63 16 18 C -0.04 -0.92 5.74 -21.30 -0.12 -1.04 16 19 C -0.11 -2.11 9.77 22.34 0.22 -1.89 16 20 C -0.11 -1.97 9.95 22.04 0.22 -1.75 16 21 C -0.13 -3.11 9.95 22.05 0.22 -2.89 16 22 C -0.11 -3.67 9.56 22.31 0.21 -3.45 16 23 C -0.10 -3.09 5.75 -21.23 -0.12 -3.21 16 24 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 25 H 0.40 19.15 7.90 -92.70 -0.73 18.42 16 26 H 0.11 3.35 7.65 -2.39 -0.02 3.33 16 27 H 0.11 3.35 7.65 -2.39 -0.02 3.33 16 28 H 0.14 3.30 6.21 -2.91 -0.02 3.28 16 29 H 0.16 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 31 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.11 3.90 7.62 -2.91 -0.02 3.88 16 Total: -1.00 -73.45 301.31 4.46 -68.99 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.40 Total: 28.76 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 3.75 Total: -13.33 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -1.34 Total: -78.33 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.39 Total: -50.55 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -73.45 4.46 -68.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070266659.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.052 kcal (2) G-P(sol) polarization free energy of solvation -73.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds